BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCF4h05.yg.2.1
(697 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_111596.1| Arabidopsis thaliana ATGSL10 (GLUCAN SYNTH... 157 3e-036
gb|AV831087.1|AV831087 AV831087 RAFL9 Arabidopsis thaliana ... 131 2e-028
gb|AY099734.1| Arabidopsis thaliana putative glucan synthas... 131 2e-028
emb|AL094618.1|CNS00XA4 Arabidopsis thaliana genome survey ... 109 6e-022
emb|AL094620.1|CNS00XA6 Arabidopsis thaliana genome survey ... 109 6e-022
gb|AF162444.1|T32N4 Arabidopsis thaliana BAC T32N4 109 6e-022
emb|AX059538.1| Sequence 271 from Patent WO0055325 109 6e-022
gb|AC012392.1|AC012392 Genomic Sequence For Arabidopsis tha... 109 6e-022
emb|AJ270058.1| Arabidopsis thaliana DNA chromosome 4, shor... 109 6e-022
emb|AL161502.2|ATCHRIV14 Arabidopsis thaliana DNA chromosom... 109 6e-022
ref|NM_116736.1| Arabidopsis thaliana ATGSL1 (GLUCAN SYNTHA... 109 6e-022
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 109 6e-022
emb|BX824879.1|CNS0A7RK Arabidopsis thaliana Full-length cD... 94 4e-017
gb|AC006922.7| Arabidopsis thaliana chromosome 2 clone T1J8... 92 2e-016
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 92 2e-016
emb|AX506240.1| Sequence 935 from Patent WO0216655 90 6e-016
emb|AL161497.2|ATCHRIV9 Arabidopsis thaliana DNA chromosome... 90 6e-016
gb|AC005142.2| Arabidopsis thaliana BAC T5L23 from chromoso... 90 6e-016
ref|NM_116593.3| Arabidopsis thaliana ATGSL05 (GLUCAN SYNTH... 90 6e-016
gb|AF071527.1| Arabidopsis thaliana BAC F9H3, from chromoso... 90 6e-016
ref|NM_179940.1| Arabidopsis thaliana ATGSL08 (GLUCAN SYNTH... 82 1e-013
gb|AC012395.5|ATAC012395 Arabidopsis thaliana chromosome II... 72 1e-010
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 72 1e-010
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 72 1e-010
emb|CR356858.1| Arabidopsis thaliana T-DNA flanking sequenc... 66 9e-009
gb|CW845819.1|CW845819 GT12585.Ds5.10.23.2003.jx32.525 Arab... 60 5e-007
emb|AX651854.1| Sequence 720 from Patent WO03000898 60 5e-007
dbj|AB023038.1| Arabidopsis thaliana genomic DNA, chromosom... 60 5e-007
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 60 5e-007
emb|AL353013.1|ATT24H18 Arabidopsis thaliana DNA chromosome... 60 5e-007
ref|NM_112317.1| Arabidopsis thaliana ATGSL04 (GLUCAN SYNTH... 60 5e-007
ref|NM_121303.3| Arabidopsis thaliana ATGSL12 (GLUCAN SYNTH... 60 5e-007
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 60 5e-007
gb|CL509491.1|CL509491 SAIL_812_E05.v2 SAIL Collection Arab... 48 0.002
gb|CW841227.1|CW841227 ET11006.Ds3.04.02.2003.jw89.611 Arab... 48 0.002
gb|AC006436.5| Arabidopsis thaliana chromosome 2 clone F13J... 48 0.002
gb|AC007063.6| Arabidopsis thaliana chromosome 2 clone T10F... 48 0.002
dbj|AB025605.1| Arabidopsis thaliana genomic DNA, chromosom... 48 0.002
tpg|BK001470.1| TPA: Arabidopsis thaliana callose synthase ... 48 0.002
gb|AY337762.1| Arabidopsis thaliana LAP1 (At2g13680) mRNA, ... 48 0.002
ref|NM_123045.2| Arabidopsis thaliana ATGSL09 (GLUCAN SYNTH... 48 0.002
ref|NM_179622.2| Arabidopsis thaliana 1,3-beta-glucan synth... 48 0.002
gb|AF237733.1|AF237733 Arabidopsis thaliana callose synthas... 44 0.032
ref|NM_100436.2| Arabidopsis thaliana CALS1 (CALLOSE SYNTHA... 44 0.032
gb|AU238195.1|AU238195 AU238195 RAFL16 Arabidopsis thaliana... 42 0.13
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 42 0.13
emb|AX412747.1| Sequence 511 from Patent WO0222675 42 0.13
emb|AX508002.1| Sequence 2697 from Patent WO0216655 42 0.13
gb|AC007153.2| Arabidopsis thaliana chromosome I BAC F3F20 ... 42 0.13
gb|AC005106.2|AC005106 Genomic sequence for Arabidopsis tha... 42 0.13
gb|AC006223.4| Arabidopsis thaliana chromosome 2 clone F22D... 42 0.13
dbj|AK117353.1| Arabidopsis thaliana At2g31960 mRNA for put... 42 0.13
ref|NM_179847.1| Arabidopsis thaliana ATGSL03 (GLUCAN SYNTH... 42 0.13
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 42 0.13
emb|BX662798.1| Arabidopsis thaliana T-DNA flanking sequenc... 40 0.50
gb|CB185577.1|CB185577 EST000110 Arabidopsis Salicylic Acid... 40 0.50
>ref|NM_111596.1| Arabidopsis thaliana ATGSL10 (GLUCAN SYNTHASE-LIKE 10);
1,3-beta-glucan synthase AT3G07160 (ATGSL10) mRNA,
complete cds
Length = 5981
Score = 157 bits (79), Expect = 3e-036
Identities = 208/251 (82%)
Strand = Plus / Minus
Query: 101 tctcggctaagaacttgttcaccatttccaccagcaacttttccttcaaatagtgcaatc 160
||||| |||||||| ||||||||||| ||||||||||| || |||||||| || || ||
Sbjct: 4448 tctcgactaagaacctgttcaccattcccaccagcaaccttcccttcaaacagagctatt 4389
Query: 161 tgattaagtccaacatccctacctttgccaacctgaatatattcatgatgagttatgcat 220
||||| || |||||||| | |||||||| ||||||||||| ||||||||||| |
Sbjct: 4388 tgattgagcccaacatctcgccctttgcccacctgaatatactcatgatgagtaacattc 4329
Query: 221 ccttgacgcagagttgagttgaatcctgcatatatatcctcactgatattgatgctgcga 280
|||||||| ||||||| |||||| || ||| ||||||| ||||| ||||||||| |||
Sbjct: 4328 ccttgacgtagagttgtgttgaaaccagcaaatatatcttcactaatattgatgacccga 4269
Query: 281 gaggccttactaattccaccccttgttatatgaaaaattctatcaaaaacatctggatga 340
|||||||| || || ||||| | ||| |||||||| | ||| ||||| ||||||||||||
Sbjct: 4268 gaggccttgctgataccaccacgtgtaatatgaaatactctgtcaaagacatctggatga 4209
Query: 341 ccatagtgcat 351
||||| |||||
Sbjct: 4208 ccataatgcat 4198
Score = 42.1 bits (21), Expect = 0.13
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 556 atcctgattcatatcaatagt 576
|||||||||||||||||||||
Sbjct: 3993 atcctgattcatatcaatagt 3973
>gb|AV831087.1|AV831087 AV831087 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-84-B14 5',
mRNA sequence
Length = 547
Score = 131 bits (66), Expect = 2e-028
Identities = 192/234 (82%)
Strand = Plus / Minus
Query: 101 tctcggctaagaacttgttcaccatttccaccagcaacttttccttcaaatagtgcaatc 160
||||| |||||||| ||||||||||| ||||||||||| || |||||||| || || ||
Sbjct: 234 tctcgactaagaacctgttcaccattcccaccagcaaccttcccttcaaacagagctatt 175
Query: 161 tgattaagtccaacatccctacctttgccaacctgaatatattcatgatgagttatgcat 220
||||| || |||||||| | |||||||| ||||||||||| ||||||||||| |
Sbjct: 174 tgattgagcccaacatctcgccctttgcccacctgaatatactcatgatgagtaacattc 115
Query: 221 ccttgacgcagagttgagttgaatcctgcatatatatcctcactgatattgatgctgcga 280
|||||||| ||||||| |||||| || ||| ||||||| ||||| ||||||||| |||
Sbjct: 114 ccttgacgtagagttgtgttgaaaccagcaaatatatcttcactaatattgatgacccga 55
Query: 281 gaggccttactaattccaccccttgttatatgaaaaattctatcaaaaacatct 334
|||||||| || || ||||| | ||| |||||||| | ||| ||||| ||||||
Sbjct: 54 gaggccttgctgataccaccacgtgtaatatgaaatactctgtcaaagacatct 1
>gb|AY099734.1| Arabidopsis thaliana putative glucan synthase (At3g07160) mRNA,
complete cds
Length = 1780
Score = 131 bits (66), Expect = 2e-028
Identities = 192/234 (82%)
Strand = Plus / Minus
Query: 101 tctcggctaagaacttgttcaccatttccaccagcaacttttccttcaaatagtgcaatc 160
||||| |||||||| ||||||||||| ||||||||||| || |||||||| || || ||
Sbjct: 234 tctcgactaagaacctgttcaccattcccaccagcaaccttcccttcaaacagagctatt 175
Query: 161 tgattaagtccaacatccctacctttgccaacctgaatatattcatgatgagttatgcat 220
||||| || |||||||| | |||||||| ||||||||||| ||||||||||| |
Sbjct: 174 tgattgagcccaacatctcgccctttgcccacctgaatatactcatgatgagtaacattc 115
Query: 221 ccttgacgcagagttgagttgaatcctgcatatatatcctcactgatattgatgctgcga 280
|||||||| ||||||| |||||| || ||| ||||||| ||||| ||||||||| |||
Sbjct: 114 ccttgacgtagagttgtgttgaaaccagcaaatatatcttcactaatattgatgacccga 55
Query: 281 gaggccttactaattccaccccttgttatatgaaaaattctatcaaaaacatct 334
|||||||| || || ||||| | ||| |||||||| | ||| ||||| ||||||
Sbjct: 54 gaggccttgctgataccaccacgtgtaatatgaaatactctgtcaaagacatct 1
>emb|AL094618.1|CNS00XA4 Arabidopsis thaliana genome survey sequence T7 end of BAC T13I7 of
TAMU library from strain Columbia of Arabidopsis
thaliana, genomic survey sequence
Length = 425
Score = 109 bits (55), Expect = 6e-022
Identities = 82/91 (90%)
Strand = Plus / Minus
Query: 322 atcaaaaacatctggatgaccatagtgcattctcactttcagcgggttagcaagaacacg 381
|||||| ||||| ||||||||||| ||||| ||||||||||| ||||| |||||||||||
Sbjct: 318 atcaaatacatccggatgaccataatgcatcctcactttcagtgggttggcaagaacacg 259
Query: 382 ctgtcctaatgtcacaaaacttgtctcctga 412
||||||||| || ||||||||||| ||||||
Sbjct: 258 ctgtcctaaggttacaaaacttgtttcctga 228
Score = 42.1 bits (21), Expect = 0.13
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 239 ttgaatcctgcatatatatcctcactgat 267
|||||||| ||| ||||||||||||||||
Sbjct: 401 ttgaatccagcaaatatatcctcactgat 373
>emb|AL094620.1|CNS00XA6 Arabidopsis thaliana genome survey sequence T7 end of BAC T13I8 of
TAMU library from strain Columbia of Arabidopsis
thaliana, genomic survey sequence
Length = 660
Score = 109 bits (55), Expect = 6e-022
Identities = 82/91 (90%)
Strand = Plus / Minus
Query: 322 atcaaaaacatctggatgaccatagtgcattctcactttcagcgggttagcaagaacacg 381
|||||| ||||| ||||||||||| ||||| ||||||||||| ||||| |||||||||||
Sbjct: 318 atcaaatacatccggatgaccataatgcatcctcactttcagtgggttggcaagaacacg 259
Query: 382 ctgtcctaatgtcacaaaacttgtctcctga 412
||||||||| || ||||||||||| ||||||
Sbjct: 258 ctgtcctaaggttacaaaacttgtttcctga 228
Score = 42.1 bits (21), Expect = 0.13
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 239 ttgaatcctgcatatatatcctcactgat 267
|||||||| ||| ||||||||||||||||
Sbjct: 401 ttgaatccagcaaatatatcctcactgat 373
>gb|AF162444.1|T32N4 Arabidopsis thaliana BAC T32N4
Length = 80196
Score = 109 bits (55), Expect = 6e-022
Identities = 82/91 (90%)
Strand = Plus / Minus
Query: 322 atcaaaaacatctggatgaccatagtgcattctcactttcagcgggttagcaagaacacg 381
|||||| ||||| ||||||||||| ||||| ||||||||||| ||||| |||||||||||
Sbjct: 11361 atcaaatacatccggatgaccataatgcatcctcactttcagtgggttggcaagaacacg 11302
Query: 382 ctgtcctaatgtcacaaaacttgtctcctga 412
||||||||| || ||||||||||| ||||||
Sbjct: 11301 ctgtcctaaggttacaaaacttgtttcctga 11271
Score = 42.1 bits (21), Expect = 0.13
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 239 ttgaatcctgcatatatatcctcactgat 267
|||||||| ||| ||||||||||||||||
Sbjct: 11444 ttgaatccagcaaatatatcctcactgat 11416
>emb|AX059538.1| Sequence 271 from Patent WO0055325
Length = 47489
Score = 109 bits (55), Expect = 6e-022
Identities = 82/91 (90%)
Strand = Plus / Minus
Query: 322 atcaaaaacatctggatgaccatagtgcattctcactttcagcgggttagcaagaacacg 381
|||||| ||||| ||||||||||| ||||| ||||||||||| ||||| |||||||||||
Sbjct: 1864 atcaaatacatccggatgaccataatgcatcctcactttcagtgggttggcaagaacacg 1805
Query: 382 ctgtcctaatgtcacaaaacttgtctcctga 412
||||||||| || ||||||||||| ||||||
Sbjct: 1804 ctgtcctaaggttacaaaacttgtttcctga 1774
Score = 42.1 bits (21), Expect = 0.13
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 239 ttgaatcctgcatatatatcctcactgat 267
|||||||| ||| ||||||||||||||||
Sbjct: 1947 ttgaatccagcaaatatatcctcactgat 1919
>gb|AC012392.1|AC012392 Genomic Sequence For Arabidopsis thaliana clone C17L7, Chromosome IV,
complete sequence
Length = 183147
Score = 109 bits (55), Expect = 6e-022
Identities = 82/91 (90%)
Strand = Plus / Plus
Query: 322 atcaaaaacatctggatgaccatagtgcattctcactttcagcgggttagcaagaacacg 381
|||||| ||||| ||||||||||| ||||| ||||||||||| ||||| |||||||||||
Sbjct: 180223 atcaaatacatccggatgaccataatgcatcctcactttcagtgggttggcaagaacacg 180282
Query: 382 ctgtcctaatgtcacaaaacttgtctcctga 412
||||||||| || ||||||||||| ||||||
Sbjct: 180283 ctgtcctaaggttacaaaacttgtttcctga 180313
Score = 42.1 bits (21), Expect = 0.13
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 239 ttgaatcctgcatatatatcctcactgat 267
|||||||| ||| ||||||||||||||||
Sbjct: 180140 ttgaatccagcaaatatatcctcactgat 180168
>emb|AJ270058.1| Arabidopsis thaliana DNA chromosome 4, short arm
Length = 3052119
Score = 109 bits (55), Expect = 6e-022
Identities = 82/91 (90%)
Strand = Plus / Minus
Query: 322 atcaaaaacatctggatgaccatagtgcattctcactttcagcgggttagcaagaacacg 381
|||||| ||||| ||||||||||| ||||| ||||||||||| ||||| |||||||||||
Sbjct: 2539689 atcaaatacatccggatgaccataatgcatcctcactttcagtgggttggcaagaacacg 2539630
Query: 382 ctgtcctaatgtcacaaaacttgtctcctga 412
||||||||| || ||||||||||| ||||||
Sbjct: 2539629 ctgtcctaaggttacaaaacttgtttcctga 2539599
Score = 89.7 bits (45), Expect = 6e-016
Identities = 129/157 (82%)
Strand = Plus / Minus
Query: 323 tcaaaaacatctggatgaccatagtgcattctcactttcagcgggttagcaagaacacgc 382
||||| ||||| || || ||||| |||||||| || ||||| ||||| ||||||||||||
Sbjct: 1576249 tcaaatacatcagggtggccataatgcattctgaccttcagtgggtttgcaagaacacgc 1576190
Query: 383 tgtcctaatgtcacaaaacttgtctcctgattagacataaatgaggccagggaggaaaca 442
|| || | || |||||||||||||||||| |||||| || | ||||| || || ||
Sbjct: 1576189 tgaccaagagtgacaaaacttgtctcctgagcagacatgaaccacgccagtgacgagact 1576130
Query: 443 cttcccgtgaagacatgctccctaacaccaagaatag 479
||||||||||| ||||||||| |||||||||||||
Sbjct: 1576129 gatcccgtgaagatatgctccctgacaccaagaatag 1576093
Score = 42.1 bits (21), Expect = 0.13
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 239 ttgaatcctgcatatatatcctcactgat 267
|||||||| ||| ||||||||||||||||
Sbjct: 2539772 ttgaatccagcaaatatatcctcactgat 2539744
>emb|AL161502.2|ATCHRIV14 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 14
Length = 198563
Score = 109 bits (55), Expect = 6e-022
Identities = 82/91 (90%)
Strand = Plus / Minus
Query: 322 atcaaaaacatctggatgaccatagtgcattctcactttcagcgggttagcaagaacacg 381
|||||| ||||| ||||||||||| ||||| ||||||||||| ||||| |||||||||||
Sbjct: 72886 atcaaatacatccggatgaccataatgcatcctcactttcagtgggttggcaagaacacg 72827
Query: 382 ctgtcctaatgtcacaaaacttgtctcctga 412
||||||||| || ||||||||||| ||||||
Sbjct: 72826 ctgtcctaaggttacaaaacttgtttcctga 72796
Score = 42.1 bits (21), Expect = 0.13
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 239 ttgaatcctgcatatatatcctcactgat 267
|||||||| ||| ||||||||||||||||
Sbjct: 72969 ttgaatccagcaaatatatcctcactgat 72941
>ref|NM_116736.1| Arabidopsis thaliana ATGSL1 (GLUCAN SYNTHASE LIKE-1); 1,3-beta-glucan
synthase/ transferase, transferring glycosyl groups
AT4G04970 (ATGSL1) mRNA, complete cds
Length = 5827
Score = 109 bits (55), Expect = 6e-022
Identities = 82/91 (90%)
Strand = Plus / Minus
Query: 322 atcaaaaacatctggatgaccatagtgcattctcactttcagcgggttagcaagaacacg 381
|||||| ||||| ||||||||||| ||||| ||||||||||| ||||| |||||||||||
Sbjct: 3744 atcaaatacatccggatgaccataatgcatcctcactttcagtgggttggcaagaacacg 3685
Query: 382 ctgtcctaatgtcacaaaacttgtctcctga 412
||||||||| || ||||||||||| ||||||
Sbjct: 3684 ctgtcctaaggttacaaaacttgtttcctga 3654
Score = 42.1 bits (21), Expect = 0.13
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 239 ttgaatcctgcatatatatcctcactgat 267
|||||||| ||| ||||||||||||||||
Sbjct: 3827 ttgaatccagcaaatatatcctcactgat 3799
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 109 bits (55), Expect = 6e-022
Identities = 82/91 (90%)
Strand = Plus / Minus
Query: 322 atcaaaaacatctggatgaccatagtgcattctcactttcagcgggttagcaagaacacg 381
|||||| ||||| ||||||||||| ||||| ||||||||||| ||||| |||||||||||
Sbjct: 2540869 atcaaatacatccggatgaccataatgcatcctcactttcagtgggttggcaagaacacg 2540810
Query: 382 ctgtcctaatgtcacaaaacttgtctcctga 412
||||||||| || ||||||||||| ||||||
Sbjct: 2540809 ctgtcctaaggttacaaaacttgtttcctga 2540779
Score = 89.7 bits (45), Expect = 6e-016
Identities = 129/157 (82%)
Strand = Plus / Minus
Query: 323 tcaaaaacatctggatgaccatagtgcattctcactttcagcgggttagcaagaacacgc 382
||||| ||||| || || ||||| |||||||| || ||||| ||||| ||||||||||||
Sbjct: 1577434 tcaaatacatcagggtggccataatgcattctgaccttcagtgggtttgcaagaacacgc 1577375
Query: 383 tgtcctaatgtcacaaaacttgtctcctgattagacataaatgaggccagggaggaaaca 442
|| || | || |||||||||||||||||| |||||| || | ||||| || || ||
Sbjct: 1577374 tgaccaagagtgacaaaacttgtctcctgagcagacatgaaccacgccagtgacgagact 1577315
Query: 443 cttcccgtgaagacatgctccctaacaccaagaatag 479
||||||||||| ||||||||| |||||||||||||
Sbjct: 1577314 gatcccgtgaagatatgctccctgacaccaagaatag 1577278
Score = 42.1 bits (21), Expect = 0.13
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 239 ttgaatcctgcatatatatcctcactgat 267
|||||||| ||| ||||||||||||||||
Sbjct: 2540952 ttgaatccagcaaatatatcctcactgat 2540924
>emb|BX824879.1|CNS0A7RK Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH7ZB11 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1717
Score = 93.7 bits (47), Expect = 4e-017
Identities = 92/107 (85%)
Strand = Plus / Minus
Query: 107 ctaagaacttgttcaccatttccaccagcaacttttccttcaaatagtgcaatctgatta 166
||||||||||||| || ||| |||||||||||||| |||||||||| || || |||||
Sbjct: 251 ctaagaacttgtttactattcccaccagcaactttctcttcaaatagagctatttgattg 192
Query: 167 agtccaacatccctacctttgccaacctgaatatattcatgatgagt 213
|| |||||||| | |||||||| ||||||||||| |||||||||||
Sbjct: 191 agcccaacatctcgccctttgcccacctgaatatactcatgatgagt 145
>gb|AC006922.7| Arabidopsis thaliana chromosome 2 clone T1J8 map g6825, complete
sequence
Length = 134151
Score = 91.7 bits (46), Expect = 2e-016
Identities = 136/166 (81%)
Strand = Plus / Plus
Query: 29 tagaatccaacagttgtcacgtagaaggataacatcctgaaaaagtcaaaaagttgtccg 88
||||||||||| ||||| | |||||| || | ||| || ||||||||||| || || ||
Sbjct: 18615 tagaatccaactgttgtgaagtagaatgacatcattctaaaaaagtcaaacagctgccca 18674
Query: 89 agtctatatatgtctcggctaagaacttgttcaccatttccaccagcaacttttccttca 148
| ||| || | || | ||||||||||||||| ||||||||||| || || || ||||||
Sbjct: 18675 attctgtagacatccctgctaagaacttgttctccatttccacctgctaccttcccttca 18734
Query: 149 aatagtgcaatctgattaagtccaacatccctacctttgccaacct 194
||||| |||||||| |||||||| ||||| || ||||| |||||||
Sbjct: 18735 aatagggcaatctggttaagtcctacatctcttcctttaccaacct 18780
Score = 65.9 bits (33), Expect = 9e-009
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 305 gttatatgaaaaattctatcaaaaacatctggatgaccatagtgcattc 353
||||||||||| |||||||| || ||||||||||| |||||||||||||
Sbjct: 19148 gttatatgaaatattctatcgaacacatctggatgcccatagtgcattc 19196
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 91.7 bits (46), Expect = 2e-016
Identities = 136/166 (81%)
Strand = Plus / Plus
Query: 29 tagaatccaacagttgtcacgtagaaggataacatcctgaaaaagtcaaaaagttgtccg 88
||||||||||| ||||| | |||||| || | ||| || ||||||||||| || || ||
Sbjct: 15464515 tagaatccaactgttgtgaagtagaatgacatcattctaaaaaagtcaaacagctgccca 15464574
Query: 89 agtctatatatgtctcggctaagaacttgttcaccatttccaccagcaacttttccttca 148
| ||| || | || | ||||||||||||||| ||||||||||| || || || ||||||
Sbjct: 15464575 attctgtagacatccctgctaagaacttgttctccatttccacctgctaccttcccttca 15464634
Query: 149 aatagtgcaatctgattaagtccaacatccctacctttgccaacct 194
||||| |||||||| |||||||| ||||| || ||||| |||||||
Sbjct: 15464635 aatagggcaatctggttaagtcctacatctcttcctttaccaacct 15464680
Score = 65.9 bits (33), Expect = 9e-009
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 305 gttatatgaaaaattctatcaaaaacatctggatgaccatagtgcattc 353
||||||||||| |||||||| || ||||||||||| |||||||||||||
Sbjct: 15465048 gttatatgaaatattctatcgaacacatctggatgcccatagtgcattc 15465096
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 392 gtcacaaaacttgtctcctgattagacataaa 423
|||||||||||||| |||||||| ||||||||
Sbjct: 5711244 gtcacaaaacttgtttcctgatttgacataaa 5711213
Score = 42.1 bits (21), Expect = 0.13
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 157 aatctgattaagtccaacatccctacctttgccaacctgaatatattcatgatgagt 213
|||||| || ||||| ||||| || ||||| ||||| || || ||||||||||||||
Sbjct: 13605296 aatctggttgagtcctacatctctccctttaccaacttgtatgtattcatgatgagt 13605240
Score = 42.1 bits (21), Expect = 0.13
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 322 atcaaaaacatctggatgacc 342
|||||||||||||||||||||
Sbjct: 13605038 atcaaaaacatctggatgacc 13605018
>emb|AX506240.1| Sequence 935 from Patent WO0216655
Length = 5273
Score = 89.7 bits (45), Expect = 6e-016
Identities = 129/157 (82%)
Strand = Plus / Minus
Query: 323 tcaaaaacatctggatgaccatagtgcattctcactttcagcgggttagcaagaacacgc 382
||||| ||||| || || ||||| |||||||| || ||||| ||||| ||||||||||||
Sbjct: 3694 tcaaatacatcagggtggccataatgcattctgaccttcagtgggtttgcaagaacacgc 3635
Query: 383 tgtcctaatgtcacaaaacttgtctcctgattagacataaatgaggccagggaggaaaca 442
|| || | || |||||||||||||||||| |||||| || | ||||| || || ||
Sbjct: 3634 tgaccaagagtgacaaaacttgtctcctgagcagacatgaaccacgccagtgacgagact 3575
Query: 443 cttcccgtgaagacatgctccctaacaccaagaatag 479
||||||||||| ||||||||| |||||||||||||
Sbjct: 3574 gatcccgtgaagatatgctccctgacaccaagaatag 3538
>emb|AL161497.2|ATCHRIV9 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 9
Length = 159629
Score = 89.7 bits (45), Expect = 6e-016
Identities = 129/157 (82%)
Strand = Plus / Minus
Query: 323 tcaaaaacatctggatgaccatagtgcattctcactttcagcgggttagcaagaacacgc 382
||||| ||||| || || ||||| |||||||| || ||||| ||||| ||||||||||||
Sbjct: 38153 tcaaatacatcagggtggccataatgcattctgaccttcagtgggtttgcaagaacacgc 38094
Query: 383 tgtcctaatgtcacaaaacttgtctcctgattagacataaatgaggccagggaggaaaca 442
|| || | || |||||||||||||||||| |||||| || | ||||| || || ||
Sbjct: 38093 tgaccaagagtgacaaaacttgtctcctgagcagacatgaaccacgccagtgacgagact 38034
Query: 443 cttcccgtgaagacatgctccctaacaccaagaatag 479
||||||||||| ||||||||| |||||||||||||
Sbjct: 38033 gatcccgtgaagatatgctccctgacaccaagaatag 37997
>gb|AC005142.2| Arabidopsis thaliana BAC T5L23 from chromosome IV, near 19 cM, complete
sequence
Length = 116448
Score = 89.7 bits (45), Expect = 6e-016
Identities = 129/157 (82%)
Strand = Plus / Minus
Query: 323 tcaaaaacatctggatgaccatagtgcattctcactttcagcgggttagcaagaacacgc 382
||||| ||||| || || ||||| |||||||| || ||||| ||||| ||||||||||||
Sbjct: 16876 tcaaatacatcagggtggccataatgcattctgaccttcagtgggtttgcaagaacacgc 16817
Query: 383 tgtcctaatgtcacaaaacttgtctcctgattagacataaatgaggccagggaggaaaca 442
|| || | || |||||||||||||||||| |||||| || | ||||| || || ||
Sbjct: 16816 tgaccaagagtgacaaaacttgtctcctgagcagacatgaaccacgccagtgacgagact 16757
Query: 443 cttcccgtgaagacatgctccctaacaccaagaatag 479
||||||||||| ||||||||| |||||||||||||
Sbjct: 16756 gatcccgtgaagatatgctccctgacaccaagaatag 16720
>ref|NM_116593.3| Arabidopsis thaliana ATGSL05 (GLUCAN SYNTHASE-LIKE 5);
1,3-beta-glucan synthase/ transferase, transferring
glycosyl groups AT4G03550 (ATGSL05) mRNA, complete cds
Length = 5835
Score = 89.7 bits (45), Expect = 6e-016
Identities = 129/157 (82%)
Strand = Plus / Minus
Query: 323 tcaaaaacatctggatgaccatagtgcattctcactttcagcgggttagcaagaacacgc 382
||||| ||||| || || ||||| |||||||| || ||||| ||||| ||||||||||||
Sbjct: 3929 tcaaatacatcagggtggccataatgcattctgaccttcagtgggtttgcaagaacacgc 3870
Query: 383 tgtcctaatgtcacaaaacttgtctcctgattagacataaatgaggccagggaggaaaca 442
|| || | || |||||||||||||||||| |||||| || | ||||| || || ||
Sbjct: 3869 tgaccaagagtgacaaaacttgtctcctgagcagacatgaaccacgccagtgacgagact 3810
Query: 443 cttcccgtgaagacatgctccctaacaccaagaatag 479
||||||||||| ||||||||| |||||||||||||
Sbjct: 3809 gatcccgtgaagatatgctccctgacaccaagaatag 3773
>gb|AF071527.1| Arabidopsis thaliana BAC F9H3, from chromosome IV near 18.8 cM,
complete sequence
Length = 95519
Score = 89.7 bits (45), Expect = 6e-016
Identities = 129/157 (82%)
Strand = Plus / Plus
Query: 323 tcaaaaacatctggatgaccatagtgcattctcactttcagcgggttagcaagaacacgc 382
||||| ||||| || || ||||| |||||||| || ||||| ||||| ||||||||||||
Sbjct: 14908 tcaaatacatcagggtggccataatgcattctgaccttcagtgggtttgcaagaacacgc 14967
Query: 383 tgtcctaatgtcacaaaacttgtctcctgattagacataaatgaggccagggaggaaaca 442
|| || | || |||||||||||||||||| |||||| || | ||||| || || ||
Sbjct: 14968 tgaccaagagtgacaaaacttgtctcctgagcagacatgaaccacgccagtgacgagact 15027
Query: 443 cttcccgtgaagacatgctccctaacaccaagaatag 479
||||||||||| ||||||||| |||||||||||||
Sbjct: 15028 gatcccgtgaagatatgctccctgacaccaagaatag 15064
>ref|NM_179940.1| Arabidopsis thaliana ATGSL08 (GLUCAN SYNTHASE-LIKE 8);
1,3-beta-glucan synthase/ transferase, transferring
glycosyl groups AT2G36850 (ATGSL08) mRNA, complete cds
Length = 5281
Score = 81.8 bits (41), Expect = 1e-013
Identities = 122/149 (81%)
Strand = Plus / Minus
Query: 29 tagaatccaacagttgtcacgtagaaggataacatcctgaaaaagtcaaaaagttgtccg 88
||||||||||| ||||| | |||||| || | ||| || ||||||||||| || || ||
Sbjct: 3827 tagaatccaactgttgtgaagtagaatgacatcattctaaaaaagtcaaacagctgccca 3768
Query: 89 agtctatatatgtctcggctaagaacttgttcaccatttccaccagcaacttttccttca 148
| ||| || | || | ||||||||||||||| ||||||||||| || || || ||||||
Sbjct: 3767 attctgtagacatccctgctaagaacttgttctccatttccacctgctaccttcccttca 3708
Query: 149 aatagtgcaatctgattaagtccaacatc 177
||||| |||||||| |||||||| |||||
Sbjct: 3707 aatagggcaatctggttaagtcctacatc 3679
Score = 65.9 bits (33), Expect = 9e-009
Identities = 45/49 (91%)
Strand = Plus / Minus
Query: 305 gttatatgaaaaattctatcaaaaacatctggatgaccatagtgcattc 353
||||||||||| |||||||| || ||||||||||| |||||||||||||
Sbjct: 3614 gttatatgaaatattctatcgaacacatctggatgcccatagtgcattc 3566
Score = 60.0 bits (30), Expect = 5e-007
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 395 acaaaacttgtctcctgattagacataaatgaggccagggaggaaacacttcccgtgaag 454
|||||||| ||||| ||||| ||||| || | ||||| || |||||||||||||||||
Sbjct: 3467 acaaaactggtctcttgattcgacatgaaccacgccagtgatgaaacacttcccgtgaaa 3408
Query: 455 acatgctccctaac 468
|||||||| |||||
Sbjct: 3407 acatgctctctaac 3394
>gb|AC012395.5|ATAC012395 Arabidopsis thaliana chromosome III BAC T1B9 genomic sequence, complete
sequence
Length = 99128
Score = 71.9 bits (36), Expect = 1e-010
Identities = 84/100 (84%)
Strand = Plus / Minus
Query: 252 atatatcctcactgatattgatgctgcgagaggccttactaattccaccccttgttatat 311
||||||| ||||| ||||||||| ||||||||||| || || ||||| | ||| ||||
Sbjct: 66434 atatatcttcactaatattgatgacccgagaggccttgctgataccaccacgtgtaatat 66375
Query: 312 gaaaaattctatcaaaaacatctggatgaccatagtgcat 351
|||| | ||| ||||| ||||||||||||||||| |||||
Sbjct: 66374 gaaatactctgtcaaagacatctggatgaccataatgcat 66335
Score = 69.9 bits (35), Expect = 6e-010
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 101 tctcggctaagaacttgttcaccatttccaccagcaacttttccttcaaatagtgcaatc 160
||||| |||||||| ||||||||||| ||||||||||| || |||||||| || || ||
Sbjct: 66813 tctcgactaagaacctgttcaccattcccaccagcaaccttcccttcaaacagagctatt 66754
Query: 161 tgattaagtccaacatccctacctttgccaacctg 195
||||| || |||||||| | |||||||| |||||
Sbjct: 66753 tgattgagcccaacatctcgccctttgcccacctg 66719
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 71.9 bits (36), Expect = 1e-010
Identities = 84/100 (84%)
Strand = Plus / Minus
Query: 252 atatatcctcactgatattgatgctgcgagaggccttactaattccaccccttgttatat 311
||||||| ||||| ||||||||| ||||||||||| || || ||||| | ||| ||||
Sbjct: 2298069 atatatcttcactaatattgatgacccgagaggccttgctgataccaccacgtgtaatat 2298010
Query: 312 gaaaaattctatcaaaaacatctggatgaccatagtgcat 351
|||| | ||| ||||| ||||||||||||||||| |||||
Sbjct: 2298009 gaaatactctgtcaaagacatctggatgaccataatgcat 2297970
Score = 69.9 bits (35), Expect = 6e-010
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 101 tctcggctaagaacttgttcaccatttccaccagcaacttttccttcaaatagtgcaatc 160
||||| |||||||| ||||||||||| ||||||||||| || |||||||| || || ||
Sbjct: 2298448 tctcgactaagaacctgttcaccattcccaccagcaaccttcccttcaaacagagctatt 2298389
Query: 161 tgattaagtccaacatccctacctttgccaacctg 195
||||| || |||||||| | |||||||| |||||
Sbjct: 2298388 tgattgagcccaacatctcgccctttgcccacctg 2298354
Score = 60.0 bits (30), Expect = 5e-007
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 287 ttactaattccaccccttgttatatgaaaaattctatcaaaaacatctggatgaccatag 346
||||| || |||||||||||||| ||||| ||||| || || ||||||||||| ||||||
Sbjct: 4890656 ttactgatgccaccccttgttatgtgaaatattctgtcgaagacatctggatgcccatag 4890597
Query: 347 tg 348
||
Sbjct: 4890596 tg 4890595
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 71.9 bits (36), Expect = 1e-010
Identities = 84/100 (84%)
Strand = Plus / Plus
Query: 252 atatatcctcactgatattgatgctgcgagaggccttactaattccaccccttgttatat 311
||||||| ||||| ||||||||| ||||||||||| || || ||||| | ||| ||||
Sbjct: 2268355 atatatcttcactaatattgatgacccgagaggccttgctgataccaccacgtgtaatat 2268414
Query: 312 gaaaaattctatcaaaaacatctggatgaccatagtgcat 351
|||| | ||| ||||| ||||||||||||||||| |||||
Sbjct: 2268415 gaaatactctgtcaaagacatctggatgaccataatgcat 2268454
Score = 69.9 bits (35), Expect = 6e-010
Identities = 80/95 (84%)
Strand = Plus / Plus
Query: 101 tctcggctaagaacttgttcaccatttccaccagcaacttttccttcaaatagtgcaatc 160
||||| |||||||| ||||||||||| ||||||||||| || |||||||| || || ||
Sbjct: 2267976 tctcgactaagaacctgttcaccattcccaccagcaaccttcccttcaaacagagctatt 2268035
Query: 161 tgattaagtccaacatccctacctttgccaacctg 195
||||| || |||||||| | |||||||| |||||
Sbjct: 2268036 tgattgagcccaacatctcgccctttgcccacctg 2268070
Score = 60.0 bits (30), Expect = 5e-007
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 287 ttactaattccaccccttgttatatgaaaaattctatcaaaaacatctggatgaccatag 346
||||| || |||||||||||||| ||||| ||||| || || ||||||||||| ||||||
Sbjct: 4900760 ttactgatgccaccccttgttatgtgaaatattctgtcgaagacatctggatgcccatag 4900701
Query: 347 tg 348
||
Sbjct: 4900700 tg 4900699
>emb|CR356858.1| Arabidopsis thaliana T-DNA flanking sequence GK-704H08-025185,
genomic survey sequence
Length = 275
Score = 65.9 bits (33), Expect = 9e-009
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 305 gttatatgaaaaattctatcaaaaacatctggatgaccatagtgcattc 353
||||||||||| |||||||| || ||||||||||| |||||||||||||
Sbjct: 131 gttatatgaaatattctatcgaacacatctggatgcccatagtgcattc 179
>gb|CW845819.1|CW845819 GT12585.Ds5.10.23.2003.jx32.525 Arabidopsis thaliana Landsberg Ds
insertion lines Arabidopsis thaliana genomic clone
GT12585, DNA sequence
Length = 525
Score = 60.0 bits (30), Expect = 5e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 296 ccaccccttgttatatgaaaaattctatcaaaaacatctggatgaccata 345
||||| ||||||| |||||| | ||||||||||||||||||||| |||||
Sbjct: 270 ccacctcttgttagatgaaacagtctatcaaaaacatctggatggccata 319
Score = 42.1 bits (21), Expect = 0.13
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 158 atctgattaagtccaacatccctacctttgccaacctgaatatattcatgatg 210
|||||||| || |||||||| || ||||| ||||| || || |||||||||||
Sbjct: 39 atctgatttagaccaacatctcttcctttaccaacttgtatgtattcatgatg 91
>emb|AX651854.1| Sequence 720 from Patent WO03000898
Length = 5892
Score = 60.0 bits (30), Expect = 5e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 296 ccaccccttgttatatgaaaaattctatcaaaaacatctggatgaccata 345
||||| ||||||| |||||| | ||||||||||||||||||||| |||||
Sbjct: 4436 ccacctcttgttagatgaaacagtctatcaaaaacatctggatggccata 4387
Score = 50.1 bits (25), Expect = 5e-004
Identities = 88/109 (80%)
Strand = Plus / Minus
Query: 158 atctgattaagtccaacatccctacctttgccaacctgaatatattcatgatgagttatg 217
|||||||| || |||||||| || ||||| ||||| || || ||||||||||| || |
Sbjct: 4574 atctgatttagaccaacatctcttcctttaccaacttgtatgtattcatgatgggtaaca 4515
Query: 218 catccttgacgcagagttgagttgaatcctgcatatatatcctcactga 266
||||| ||| || || || |||||||||||| ||||||| |||||||
Sbjct: 4514 tttccttcacgaagtgtagaattgaatcctgcaaatatatcttcactga 4466
>dbj|AB023038.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MIE1
Length = 84462
Score = 60.0 bits (30), Expect = 5e-007
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 287 ttactaattccaccccttgttatatgaaaaattctatcaaaaacatctggatgaccatag 346
||||| || |||||||||||||| ||||| ||||| || || ||||||||||| ||||||
Sbjct: 28713 ttactgatgccaccccttgttatgtgaaatattctgtcgaagacatctggatgcccatag 28654
Query: 347 tg 348
||
Sbjct: 28653 tg 28652
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 60.0 bits (30), Expect = 5e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 296 ccaccccttgttatatgaaaaattctatcaaaaacatctggatgaccata 345
||||| ||||||| |||||| | ||||||||||||||||||||| |||||
Sbjct: 3925427 ccacctcttgttagatgaaacagtctatcaaaaacatctggatggccata 3925476
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 319 tctatcaaaaacatctggatgacc 342
||||||||||||||||||||||||
Sbjct: 13465157 tctatcaaaaacatctggatgacc 13465134
Score = 42.1 bits (21), Expect = 0.13
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 158 atctgattaagtccaacatccctacctttgccaacctgaatatattcatgatg 210
|||||||| || |||||||| || ||||| ||||| || || |||||||||||
Sbjct: 3925196 atctgatttagaccaacatctcttcctttaccaacttgtatgtattcatgatg 3925248
>emb|AL353013.1|ATT24H18 Arabidopsis thaliana DNA chromosome 5, BAC clone T24H18 (ESSA project)
Length = 90020
Score = 60.0 bits (30), Expect = 5e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 296 ccaccccttgttatatgaaaaattctatcaaaaacatctggatgaccata 345
||||| ||||||| |||||| | ||||||||||||||||||||| |||||
Sbjct: 64268 ccacctcttgttagatgaaacagtctatcaaaaacatctggatggccata 64317
Score = 42.1 bits (21), Expect = 0.13
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 158 atctgattaagtccaacatccctacctttgccaacctgaatatattcatgatg 210
|||||||| || |||||||| || ||||| ||||| || || |||||||||||
Sbjct: 64037 atctgatttagaccaacatctcttcctttaccaacttgtatgtattcatgatg 64089
>ref|NM_112317.1| Arabidopsis thaliana ATGSL04 (GLUCAN SYNTHASE-LIKE 4);
1,3-beta-glucan synthase/ transferase, transferring
glycosyl groups AT3G14570 (ATGSL04) mRNA, complete cds
Length = 5922
Score = 60.0 bits (30), Expect = 5e-007
Identities = 54/62 (87%)
Strand = Plus / Minus
Query: 287 ttactaattccaccccttgttatatgaaaaattctatcaaaaacatctggatgaccatag 346
||||| || |||||||||||||| ||||| ||||| || || ||||||||||| ||||||
Sbjct: 4385 ttactgatgccaccccttgttatgtgaaatattctgtcgaagacatctggatgcccatag 4326
Query: 347 tg 348
||
Sbjct: 4325 tg 4324
>ref|NM_121303.3| Arabidopsis thaliana ATGSL12 (GLUCAN SYNTHASE-LIKE 12);
1,3-beta-glucan synthase/ transferase, transferring
glycosyl groups AT5G13000 (ATGSL12) mRNA, complete cds
Length = 6194
Score = 60.0 bits (30), Expect = 5e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 296 ccaccccttgttatatgaaaaattctatcaaaaacatctggatgaccata 345
||||| ||||||| |||||| | ||||||||||||||||||||| |||||
Sbjct: 4578 ccacctcttgttagatgaaacagtctatcaaaaacatctggatggccata 4529
Score = 50.1 bits (25), Expect = 5e-004
Identities = 88/109 (80%)
Strand = Plus / Minus
Query: 158 atctgattaagtccaacatccctacctttgccaacctgaatatattcatgatgagttatg 217
|||||||| || |||||||| || ||||| ||||| || || ||||||||||| || |
Sbjct: 4716 atctgatttagaccaacatctcttcctttaccaacttgtatgtattcatgatgggtaaca 4657
Query: 218 catccttgacgcagagttgagttgaatcctgcatatatatcctcactga 266
||||| ||| || || || |||||||||||| ||||||| |||||||
Sbjct: 4656 tttccttcacgaagtgtagaattgaatcctgcaaatatatcttcactga 4608
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 60.0 bits (30), Expect = 5e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 296 ccaccccttgttatatgaaaaattctatcaaaaacatctggatgaccata 345
||||| ||||||| |||||| | ||||||||||||||||||||| |||||
Sbjct: 4112454 ccacctcttgttagatgaaacagtctatcaaaaacatctggatggccata 4112503
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 319 tctatcaaaaacatctggatgacc 342
||||||||||||||||||||||||
Sbjct: 14549012 tctatcaaaaacatctggatgacc 14548989
Score = 42.1 bits (21), Expect = 0.13
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 158 atctgattaagtccaacatccctacctttgccaacctgaatatattcatgatg 210
|||||||| || |||||||| || ||||| ||||| || || |||||||||||
Sbjct: 4112223 atctgatttagaccaacatctcttcctttaccaacttgtatgtattcatgatg 4112275
>gb|CL509491.1|CL509491 SAIL_812_E05.v2 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_812_E05.v2, DNA sequence
Length = 886
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 319 tctatcaaaaacatctggatgacc 342
||||||||||||||||||||||||
Sbjct: 412 tctatcaaaaacatctggatgacc 435
Score = 42.1 bits (21), Expect = 0.13
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 157 aatctgattaagtccaacatccctacctttgccaacctgaatatattcatgatgagt 213
|||||| || ||||| ||||| || ||||| ||||| || || ||||||||||||||
Sbjct: 157 aatctggttgagtcctacatctctccctttaccaacttgtatgtattcatgatgagt 213
>gb|CW841227.1|CW841227 ET11006.Ds3.04.02.2003.jw89.611 Arabidopsis thaliana Landsberg Ds
insertion lines Arabidopsis thaliana genomic clone
ET11006, DNA sequence
Length = 608
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 392 gtcacaaaacttgtctcctgattagacataaa 423
|||||||||||||| |||||||| ||||||||
Sbjct: 570 gtcacaaaacttgtttcctgatttgacataaa 539
Score = 42.1 bits (21), Expect = 0.13
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 508 gaactcctcaagcaggtttctcattttaagtgc 540
|||||| || ||||| |||||||||||||||||
Sbjct: 354 gaactcttccagcagatttctcattttaagtgc 322
>gb|AC006436.5| Arabidopsis thaliana chromosome 2 clone F13J11 map mi398, complete
sequence
Length = 104009
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 392 gtcacaaaacttgtctcctgattagacataaa 423
|||||||||||||| |||||||| ||||||||
Sbjct: 12387 gtcacaaaacttgtttcctgatttgacataaa 12356
>gb|AC007063.6| Arabidopsis thaliana chromosome 2 clone T10F5 map PR1, complete
sequence
Length = 102585
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 392 gtcacaaaacttgtctcctgattagacataaa 423
|||||||||||||| |||||||| ||||||||
Sbjct: 94589 gtcacaaaacttgtttcctgatttgacataaa 94558
>dbj|AB025605.1| Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F5H8
Length = 70098
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 319 tctatcaaaaacatctggatgacc 342
||||||||||||||||||||||||
Sbjct: 61598 tctatcaaaaacatctggatgacc 61575
>tpg|BK001470.1| TPA: Arabidopsis thaliana callose synthase (LAP1) mRNA, complete cds
Length = 5772
Score = 48.1 bits (24), Expect = 0.002
Identities = 72/88 (81%)
Strand = Plus / Minus
Query: 392 gtcacaaaacttgtctcctgattagacataaatgaggccagggaggaaacacttcccgtg 451
|||||||||||||| |||||||| |||||||| |||| | || |||||||| || ||
Sbjct: 4115 gtcacaaaacttgtttcctgatttgacataaaccaggctaaagaagaaacactgccagta 4056
Query: 452 aagacatgctccctaacaccaagaatag 479
|| | |||||| || | |||||||||||
Sbjct: 4055 aaaatatgctctctgaaaccaagaatag 4028
>gb|AY337762.1| Arabidopsis thaliana LAP1 (At2g13680) mRNA, complete cds
Length = 5950
Score = 48.1 bits (24), Expect = 0.002
Identities = 72/88 (81%)
Strand = Plus / Minus
Query: 392 gtcacaaaacttgtctcctgattagacataaatgaggccagggaggaaacacttcccgtg 451
|||||||||||||| |||||||| |||||||| |||| | || |||||||| || ||
Sbjct: 4268 gtcacaaaacttgtttcctgatttgacataaaccaggctaaagaagaaacactgccagta 4209
Query: 452 aagacatgctccctaacaccaagaatag 479
|| | |||||| || | |||||||||||
Sbjct: 4208 aaaatatgctctctgaaaccaagaatag 4181
Score = 42.1 bits (21), Expect = 0.13
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 508 gaactcctcaagcaggtttctcattttaagtgc 540
|||||| || ||||| |||||||||||||||||
Sbjct: 4152 gaactcttccagcagatttctcattttaagtgc 4120
>ref|NM_123045.2| Arabidopsis thaliana ATGSL09 (GLUCAN SYNTHASE-LIKE 9);
1,3-beta-glucan synthase AT5G36870 (ATGSL09) mRNA,
complete cds
Length = 5589
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 319 tctatcaaaaacatctggatgacc 342
||||||||||||||||||||||||
Sbjct: 4026 tctatcaaaaacatctggatgacc 4003
>ref|NM_179622.2| Arabidopsis thaliana 1,3-beta-glucan synthase AT2G13680 mRNA,
complete cds
Length = 5772
Score = 48.1 bits (24), Expect = 0.002
Identities = 72/88 (81%)
Strand = Plus / Minus
Query: 392 gtcacaaaacttgtctcctgattagacataaatgaggccagggaggaaacacttcccgtg 451
|||||||||||||| |||||||| |||||||| |||| | || |||||||| || ||
Sbjct: 4115 gtcacaaaacttgtttcctgatttgacataaaccaggctaaagaagaaacactgccagta 4056
Query: 452 aagacatgctccctaacaccaagaatag 479
|| | |||||| || | |||||||||||
Sbjct: 4055 aaaatatgctctctgaaaccaagaatag 4028
>gb|AF237733.1|AF237733 Arabidopsis thaliana callose synthase 1 catalytic subunit (CalS1)
mRNA, complete cds
Length = 6007
Score = 44.1 bits (22), Expect = 0.032
Identities = 82/102 (80%)
Strand = Plus / Minus
Query: 173 acatccctacctttgccaacctgaatatattcatgatgagttatgcatccttgacgcaga 232
||||| || ||||| ||||| || ||||||||||||||||| | ||||| |||||||
Sbjct: 4418 acatctctccctttaccaacttgtatatattcatgatgagtcacatttccttcacgcaga 4359
Query: 233 gttgagttgaatcctgcatatatatcctcactgatattgatg 274
|| || || || |||||| |||| || ||||| | |||||||
Sbjct: 4358 gtagaattaaaacctgcaaatatgtcttcactaagattgatg 4317
>ref|NM_100436.2| Arabidopsis thaliana CALS1 (CALLOSE SYNTHASE 1); transferase,
transferring glycosyl groups AT1G05570 (CALS1) mRNA,
complete cds
Length = 6022
Score = 44.1 bits (22), Expect = 0.032
Identities = 82/102 (80%)
Strand = Plus / Minus
Query: 173 acatccctacctttgccaacctgaatatattcatgatgagttatgcatccttgacgcaga 232
||||| || ||||| ||||| || ||||||||||||||||| | ||||| |||||||
Sbjct: 4418 acatctctccctttaccaacttgtatatattcatgatgagtcacatttccttcacgcaga 4359
Query: 233 gttgagttgaatcctgcatatatatcctcactgatattgatg 274
|| || || || |||||| |||| || ||||| | |||||||
Sbjct: 4358 gtagaattaaaacctgcaaatatgtcttcactaagattgatg 4317
>gb|AU238195.1|AU238195 AU238195 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-92-B13 5',
mRNA sequence
Length = 645
Score = 42.1 bits (21), Expect = 0.13
Identities = 51/61 (83%)
Strand = Plus / Minus
Query: 407 tcctgattagacataaatgaggccagggaggaaacacttcccgtgaagacatgctcccta 466
|||||||| |||||||| | || || || ||||||||||||||||| | |||||| |||
Sbjct: 595 tcctgattcgacataaaccatgcaagagaagaaacacttcccgtgaaaatatgctctcta 536
Query: 467 a 467
|
Sbjct: 535 a 535
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 42.1 bits (21), Expect = 0.13
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 173 acatccctacctttgccaacctgaatatattcatgatgagt 213
||||| || ||||| ||||| || |||||||||||||||||
Sbjct: 1649564 acatctctccctttaccaacttgtatatattcatgatgagt 1649604
>emb|AX412747.1| Sequence 511 from Patent WO0222675
Length = 5577
Score = 42.1 bits (21), Expect = 0.13
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 173 acatccctacctttgccaacctgaatatattcatgatgagt 213
||||| || ||||| ||||| || |||||||||||||||||
Sbjct: 4133 acatctctccctttaccaacttgtatatattcatgatgagt 4093
>emb|AX508002.1| Sequence 2697 from Patent WO0216655
Length = 5577
Score = 42.1 bits (21), Expect = 0.13
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 173 acatccctacctttgccaacctgaatatattcatgatgagt 213
||||| || ||||| ||||| || |||||||||||||||||
Sbjct: 4133 acatctctccctttaccaacttgtatatattcatgatgagt 4093
>gb|AC007153.2| Arabidopsis thaliana chromosome I BAC F3F20 genomic sequence, complete
sequence
Length = 103223
Score = 42.1 bits (21), Expect = 0.13
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 173 acatccctacctttgccaacctgaatatattcatgatgagt 213
||||| || ||||| ||||| || |||||||||||||||||
Sbjct: 31212 acatctctccctttaccaacttgtatatattcatgatgagt 31252
>gb|AC005106.2|AC005106 Genomic sequence for Arabidopsis thaliana BAC T25N20 from chromosome I,
complete sequence
Length = 84203
Score = 42.1 bits (21), Expect = 0.13
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 173 acatccctacctttgccaacctgaatatattcatgatgagt 213
||||| || ||||| ||||| || |||||||||||||||||
Sbjct: 81761 acatctctccctttaccaacttgtatatattcatgatgagt 81801
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 301,324
Number of Sequences: 1013581
Number of extensions: 301324
Number of successful extensions: 22346
Number of sequences better than 0.5: 57
Number of HSP's better than 0.5 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20295
Number of HSP's gapped (non-prelim): 2051
length of query: 697
length of database: 908,940,872
effective HSP length: 20
effective length of query: 677
effective length of database: 888,669,252
effective search space: 601629083604
effective search space used: 601629083604
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)