BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.006B01F020311.3.1
(609 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE521313.1|BE521313 M18H6STM Arabidopsis developing seed... 42 0.11
gb|AV827337.1|AV827337 AV827337 RAFL9 Arabidopsis thaliana ... 42 0.11
gb|BX841311.1|BX841311 BX841311 Arabidopsis thaliana Flower... 42 0.11
gb|AF372949.1|AF372949 Arabidopsis thaliana AT3g10740/T7M13... 42 0.11
gb|AY143944.1| Arabidopsis thaliana At3g10740/T7M13_18 mRNA... 42 0.11
gb|AY243509.1| Arabidopsis thaliana alpha-L-arabinofuranosi... 42 0.11
emb|BX824011.1|CNS0A4VB Arabidopsis thaliana Full-length cD... 42 0.11
dbj|AB009048.1| Arabidopsis thaliana genomic DNA, chromosom... 42 0.11
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 42 0.11
ref|NM_111911.3| Arabidopsis thaliana ASD1; hydrolase, acti... 42 0.11
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 42 0.11
gb|CW801185.1|CW801185 WiscDsLox293-296invN22 Arabidopsis t... 40 0.43
gb|AY279398.1| Arabidopsis thaliana photoperiod independent... 40 0.43
dbj|AB024033.1| Arabidopsis thaliana genomic DNA, chromosom... 40 0.43
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 40 0.43
ref|NM_112117.3| Arabidopsis thaliana PIE1 (PHOTOPERIOD-IND... 40 0.43
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 40 0.43
>gb|BE521313.1|BE521313 M18H6STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone M18H6 5', mRNA sequence
Length = 364
Score = 42.1 bits (21), Expect = 0.11
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 440 tttacaaccctggattctggggcatgaacatagaagatggaaaga 484
|||| |||||||| | |||||||||||| || ||||| |||||||
Sbjct: 90 tttataaccctggttactggggcatgaatattgaagaaggaaaga 134
>gb|AV827337.1|AV827337 AV827337 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-14-D11 5',
mRNA sequence
Length = 602
Score = 42.1 bits (21), Expect = 0.11
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 440 tttacaaccctggattctggggcatgaacatagaagatggaaaga 484
|||| |||||||| | |||||||||||| || ||||| |||||||
Sbjct: 502 tttataaccctggttactggggcatgaatattgaagaaggaaaga 546
>gb|BX841311.1|BX841311 BX841311 Arabidopsis thaliana Flowers and buds Col-0 Arabidopsis
thaliana cDNA clone GSLTFB91ZE06 5PRIM, mRNA sequence
Length = 1098
Score = 42.1 bits (21), Expect = 0.11
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 440 tttacaaccctggattctggggcatgaacatagaagatggaaaga 484
|||| |||||||| | |||||||||||| || ||||| |||||||
Sbjct: 487 tttataaccctggttactggggcatgaatattgaagaaggaaaga 531
>gb|AF372949.1|AF372949 Arabidopsis thaliana AT3g10740/T7M13_18 mRNA, complete cds
Length = 2254
Score = 42.1 bits (21), Expect = 0.11
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 440 tttacaaccctggattctggggcatgaacatagaagatggaaaga 484
|||| |||||||| | |||||||||||| || ||||| |||||||
Sbjct: 502 tttataaccctggttactggggcatgaatattgaagaaggaaaga 546
>gb|AY143944.1| Arabidopsis thaliana At3g10740/T7M13_18 mRNA, complete cds
Length = 2037
Score = 42.1 bits (21), Expect = 0.11
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 440 tttacaaccctggattctggggcatgaacatagaagatggaaaga 484
|||| |||||||| | |||||||||||| || ||||| |||||||
Sbjct: 428 tttataaccctggttactggggcatgaatattgaagaaggaaaga 472
>gb|AY243509.1| Arabidopsis thaliana alpha-L-arabinofuranosidase (ASD1) mRNA,
complete cds
Length = 2312
Score = 42.1 bits (21), Expect = 0.11
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 440 tttacaaccctggattctggggcatgaacatagaagatggaaaga 484
|||| |||||||| | |||||||||||| || ||||| |||||||
Sbjct: 636 tttataaccctggttactggggcatgaatattgaagaaggaaaga 680
>emb|BX824011.1|CNS0A4VB Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH14ZD10 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 2351
Score = 42.1 bits (21), Expect = 0.11
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 440 tttacaaccctggattctggggcatgaacatagaagatggaaaga 484
|||| |||||||| | |||||||||||| || ||||| |||||||
Sbjct: 679 tttataaccctggttactggggcatgaatattgaagaaggaaaga 723
>dbj|AB009048.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K15E6
Length = 71736
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 57 cctcatccacctcctgctcct 77
|||||||||||||||||||||
Sbjct: 24497 cctcatccacctcctgctcct 24477
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 57 cctcatccacctcctgctcct 77
|||||||||||||||||||||
Sbjct: 14318577 cctcatccacctcctgctcct 14318557
>ref|NM_111911.3| Arabidopsis thaliana ASD1; hydrolase, acting on glycosyl bonds
AT3G10740 (ASD1) mRNA, complete cds
Length = 2427
Score = 42.1 bits (21), Expect = 0.11
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 440 tttacaaccctggattctggggcatgaacatagaagatggaaaga 484
|||| |||||||| | |||||||||||| || ||||| |||||||
Sbjct: 675 tttataaccctggttactggggcatgaatattgaagaaggaaaga 719
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 57 cctcatccacctcctgctcct 77
|||||||||||||||||||||
Sbjct: 15579238 cctcatccacctcctgctcct 15579218
>gb|CW801185.1|CW801185 WiscDsLox293-296invN22 Arabidopsis thaliana T-DNA insertion
flanking sequences Arabidopsis thaliana genomic, DNA
sequence
Length = 742
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 58 ctcatccacctcctgctcct 77
||||||||||||||||||||
Sbjct: 44 ctcatccacctcctgctcct 25
>gb|AY279398.1| Arabidopsis thaliana photoperiod independent early flowering1 (PIE1)
mRNA, complete cds
Length = 6311
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 58 ctcatccacctcctgctcct 77
||||||||||||||||||||
Sbjct: 6111 ctcatccacctcctgctcct 6092
>dbj|AB024033.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MBK21
Length = 79125
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 58 ctcatccacctcctgctcct 77
||||||||||||||||||||
Sbjct: 58790 ctcatccacctcctgctcct 58771
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 58 ctcatccacctcctgctcct 77
||||||||||||||||||||
Sbjct: 4069787 ctcatccacctcctgctcct 4069768
>ref|NM_112117.3| Arabidopsis thaliana PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING
1); ATP binding / ATP-dependent helicase/ DNA binding /
helicase/ nucleic acid bi> AT3G12810 (PIE1) mRNA,
complete cds
Length = 6311
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 58 ctcatccacctcctgctcct 77
||||||||||||||||||||
Sbjct: 6111 ctcatccacctcctgctcct 6092
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 58 ctcatccacctcctgctcct 77
||||||||||||||||||||
Sbjct: 4073885 ctcatccacctcctgctcct 4073866
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 213,624
Number of Sequences: 1013581
Number of extensions: 213624
Number of successful extensions: 14679
Number of sequences better than 0.5: 17
Number of HSP's better than 0.5 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14359
Number of HSP's gapped (non-prelim): 320
length of query: 609
length of database: 908,940,872
effective HSP length: 20
effective length of query: 589
effective length of database: 888,669,252
effective search space: 523426189428
effective search space used: 523426189428
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)