BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBL6b07.xg.2.1
(644 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AP000417.1| Arabidopsis thaliana genomic DNA, chromosom... 54 3e-005
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 54 3e-005
ref|NM_112860.1| Arabidopsis thaliana ATP binding / protein... 54 3e-005
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 54 3e-005
gb|BH911004.1|BH911004 SALK_064489.56.00.x Arabidopsis thal... 48 0.002
emb|AJ590816.1| Arabidopsis thaliana T-DNA flanking sequenc... 48 0.002
emb|AL754868.1| Arabidopsis thaliana T-DNA flanking sequenc... 48 0.002
emb|AL754869.1| Arabidopsis thaliana T-DNA flanking sequenc... 48 0.002
emb|AL754870.1| Arabidopsis thaliana T-DNA flanking sequenc... 48 0.002
gb|BX834880.1|BX834880 BX834880 Arabidopsis thaliana Hormon... 48 0.002
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 48 0.002
gb|AC015448.4|AC015448 Arabidopsis thaliana chromosome I BA... 48 0.002
gb|AC015446.4|AC015446 Arabidopsis thaliana chromosome I BA... 48 0.002
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 48 0.002
emb|AL078470.1|ATF19B15 Arabidopsis thaliana DNA chromosome... 48 0.002
emb|AL161574.2|ATCHRIV70 Arabidopsis thaliana DNA chromosom... 48 0.002
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 48 0.002
ref|NM_104066.1| Arabidopsis thaliana kinase AT1G51860 mRNA... 48 0.002
ref|NM_104067.1| Arabidopsis thaliana ATP binding / kinase/... 48 0.002
ref|NM_103134.2| Arabidopsis thaliana ATP binding / protein... 48 0.002
ref|NM_119062.3| Arabidopsis thaliana kinase AT4G29180 mRNA... 48 0.002
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 48 0.002
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 48 0.002
gb|CW840916.1|CW840916 ET10666.Ds5.10.17.2002.jw68.406 Arab... 46 0.007
gb|AI995067.1|AI995067 701501658 A. thaliana, Ohio State cl... 46 0.007
gb|BX841390.1|BX841390 BX841390 Arabidopsis thaliana Hormon... 46 0.007
gb|AV523351.1|AV523351 AV523351 Arabidopsis thaliana aboveg... 46 0.007
emb|AL096692.1|F17A13 Arabidopsis thaliana clone F17A13, **... 46 0.007
emb|AX505353.1| Sequence 48 from Patent WO0216655 46 0.007
emb|AL022224.1|ATF1C12 Arabidopsis thaliana DNA chromosome ... 46 0.007
emb|AL161552.2|ATCHRIV52 Arabidopsis thaliana DNA chromosom... 46 0.007
emb|AL161575.2|ATCHRIV71 Arabidopsis thaliana DNA chromosom... 46 0.007
ref|NM_119090.1| Arabidopsis thaliana kinase AT4G29450 mRNA... 46 0.007
ref|NM_118146.3| Arabidopsis thaliana ATP binding / protein... 46 0.007
gb|BH171695.1|BH171695 SALK_004672 Arabidopsis thaliana TDN... 44 0.029
gb|BZ383875.1|BZ383875 SALK_134698.45.40.x Arabidopsis thal... 44 0.029
gb|CA781389.1|CA781389 016G02AF Infected Arabidopsis Leaf A... 44 0.029
gb|AV442775.1|AV442775 AV442775 Arabidopsis thaliana above-... 44 0.029
gb|AY052245.1| Arabidopsis thaliana At1g25390/F2J7_14 mRNA,... 44 0.029
emb|AJ522200.1|ATH522200 Arabidopsis thaliana T-DNA flankin... 44 0.029
gb|AC006434.5|AC006434 Genomic sequence for Arabidopsis tha... 44 0.029
gb|AC013354.6|AC013354 Genomic sequence for Arabidopsis tha... 44 0.029
gb|AC079281.4|AC079281 Arabidopsis thaliana chromosome 1 BA... 44 0.029
dbj|AB006705.2| Arabidopsis thaliana genomic DNA, chromosom... 44 0.029
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 44 0.029
ref|NM_101697.1| Arabidopsis thaliana ATP binding / kinase/... 44 0.029
ref|NM_106216.1| Arabidopsis thaliana ATP binding / kinase/... 44 0.029
ref|NM_125357.1| Arabidopsis thaliana ATP binding / kinase/... 44 0.029
ref|NM_102350.2| Arabidopsis thaliana kinase AT1G25390 mRNA... 44 0.029
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 44 0.029
gb|AQ969864.1|AQ969864 LERJQ87TF LERG Arabidopsis thaliana ... 42 0.12
gb|AQ969865.1|AQ969865 LERJQ87TR LERG Arabidopsis thaliana ... 42 0.12
gb|AV782756.1|AV782756 AV782756 RAFL5 Arabidopsis thaliana ... 42 0.12
gb|CD530762.1|CD530762 07N01 Arabidopsis Leaf Senescence Li... 42 0.12
gb|BX834140.1|BX834140 BX834140 Arabidopsis thaliana Adult ... 42 0.12
gb|BX834719.1|BX834719 BX834719 Arabidopsis thaliana Hormon... 42 0.12
gb|AF024650.1|AF024650 Arabidopsis thaliana receptor-like s... 42 0.12
gb|AY037237.1| Arabidopsis thaliana At2g48010/T9J23.16 mRNA... 42 0.12
gb|AY072106.1| Arabidopsis thaliana putative protein kinase... 42 0.12
gb|AY133861.1| Arabidopsis thaliana clone U19832 putative p... 42 0.12
gb|BT000518.1| Arabidopsis thaliana putative protein kinase... 42 0.12
gb|AF083784.1| Arabidopsis thaliana clone sps825 unknown mRNA 42 0.12
gb|AC013288.7|AC013288 Arabidopsis thaliana chromosome 1 BA... 42 0.12
gb|AC083891.4|AC083891 Arabidopsis thaliana chromosome 1 BA... 42 0.12
gb|AC006072.4| Arabidopsis thaliana chromosome 2 clone T9J2... 42 0.12
emb|BX826528.1|CNS0A451 Arabidopsis thaliana Full-length cD... 42 0.12
emb|BX820184.1|CNS0A8HL Arabidopsis thaliana Full-length cD... 42 0.12
emb|BX819913.1|CNS0AA0A Arabidopsis thaliana Full-length cD... 42 0.12
emb|BX814972.1|CNS0AAM2 Arabidopsis thaliana Full-length cD... 42 0.12
dbj|AB005247.2| Arabidopsis thaliana genomic DNA, chromosom... 42 0.12
emb|Z84202.1|ATZ84202 A.thaliana ORFb, ORFc and AtPK2324 gene 42 0.12
ref|NM_123182.3| Arabidopsis thaliana ATP binding / protein... 42 0.12
ref|NM_105359.2| Arabidopsis thaliana ATP binding / protein... 42 0.12
ref|NM_130368.3| Arabidopsis thaliana RKF3 (RECEPTOR-LIKE K... 42 0.12
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 42 0.12
gb|BP843401.1|BP843401 BP843401 RAFL21 Arabidopsis thaliana... 40 0.46
dbj|D88206.1| Arabidopsis thaliana APK2a mRNA for protein k... 40 0.46
gb|AY059894.1| Arabidopsis thaliana Strong similarity to AP... 40 0.46
emb|AX505929.1| Sequence 624 from Patent WO0216655 40 0.46
emb|AX651639.1| Sequence 457 from Patent WO03000898 40 0.46
gb|AF334731.1| Arabidopsis thaliana clone C00152 (e) putati... 40 0.46
gb|AC012188.2|F14L17 Sequence of BAC F14L17 from Arabidopsi... 40 0.46
gb|AC010675.6|AC010675 Arabidopsis thaliana chromosome 1 BA... 40 0.46
gb|AY518289.1| Arabidopsis thaliana strubbelig receptor fam... 40 0.46
emb|BX814410.1|CNS0ADXA Arabidopsis thaliana Full-length cD... 40 0.46
dbj|AB026645.1| Arabidopsis thaliana genomic DNA, chromosom... 40 0.46
emb|AL162508.1|ATT7H20 Arabidopsis thaliana DNA chromosome ... 40 0.46
ref|NM_112145.1| Arabidopsis thaliana ATP binding / kinase/... 40 0.46
ref|NM_120285.1| Arabidopsis thaliana kinase AT5G02070 mRNA... 40 0.46
ref|NM_101304.2| Arabidopsis thaliana APK2A (PROTEIN KINASE... 40 0.46
ref|NM_105659.2| Arabidopsis thaliana kinase AT1G69910 mRNA... 40 0.46
>dbj|AP000417.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MMB12
Length = 73977
Score = 54.0 bits (27), Expect = 3e-005
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 265 cgagaagagcgacgtgtacagcttcgg 291
|||||||||||||||||||||||||||
Sbjct: 53180 cgagaagagcgacgtgtacagcttcgg 53206
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 54.0 bits (27), Expect = 3e-005
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 265 cgagaagagcgacgtgtacagcttcgg 291
|||||||||||||||||||||||||||
Sbjct: 6813386 cgagaagagcgacgtgtacagcttcgg 6813412
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 269 aagagcgacgtgtacagctt 288
||||||||||||||||||||
Sbjct: 4185597 aagagcgacgtgtacagctt 4185616
>ref|NM_112860.1| Arabidopsis thaliana ATP binding / protein kinase/ protein
serine/threonine kinase/ protein-tyrosine kinase
AT3G19700 mRNA, complete cds
Length = 3460
Score = 54.0 bits (27), Expect = 3e-005
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 265 cgagaagagcgacgtgtacagcttcgg 291
|||||||||||||||||||||||||||
Sbjct: 2613 cgagaagagcgacgtgtacagcttcgg 2639
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 54.0 bits (27), Expect = 3e-005
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 265 cgagaagagcgacgtgtacagcttcgg 291
|||||||||||||||||||||||||||
Sbjct: 6846434 cgagaagagcgacgtgtacagcttcgg 6846460
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 269 aagagcgacgtgtacagctt 288
||||||||||||||||||||
Sbjct: 4190395 aagagcgacgtgtacagctt 4190414
>gb|BH911004.1|BH911004 SALK_064489.56.00.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_064489.56.00.x,
DNA sequence
Length = 159
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 265 cgagaagagcgacgtgtacagcttcggcgtcgtgct 300
||||||||| ||||||||||||||||| || |||||
Sbjct: 62 cgagaagagtgacgtgtacagcttcggtgtagtgct 27
>emb|AJ590816.1| Arabidopsis thaliana T-DNA flanking sequence, left border, clone
575D05, genomic survey sequence
Length = 382
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 266 gagaagagcgacgtgtacagcttcggcgtcgt 297
|||||||| ||||||||||||| |||||||||
Sbjct: 192 gagaagagtgacgtgtacagctacggcgtcgt 161
>emb|AL754868.1| Arabidopsis thaliana T-DNA flanking sequence GK-055G11-012356,
genomic survey sequence
Length = 359
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 265 cgagaagagcgacgtgtacagctt 288
||||||||||||||||||||||||
Sbjct: 136 cgagaagagcgacgtgtacagctt 159
>emb|AL754869.1| Arabidopsis thaliana T-DNA flanking sequence GK-055G11-012426,
genomic survey sequence
Length = 398
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 265 cgagaagagcgacgtgtacagctt 288
||||||||||||||||||||||||
Sbjct: 175 cgagaagagcgacgtgtacagctt 198
>emb|AL754870.1| Arabidopsis thaliana T-DNA flanking sequence GK-055G11-012470,
genomic survey sequence
Length = 629
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 265 cgagaagagcgacgtgtacagctt 288
||||||||||||||||||||||||
Sbjct: 331 cgagaagagcgacgtgtacagctt 354
>gb|BX834880.1|BX834880 BX834880 Arabidopsis thaliana Hormone Treated Callus Col-0
Arabidopsis thaliana cDNA clone GSLTPGH38ZD07 3PRIM,
mRNA sequence
Length = 1035
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 265 cgagaagagcgacgtgtacagctt 288
||||||||||||||||||||||||
Sbjct: 554 cgagaagagcgacgtgtacagctt 531
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 266 gagaagagcgacgtgtacagcttcggcgtcgt 297
|||||||| ||||||||||||| |||||||||
Sbjct: 12426456 gagaagagtgacgtgtacagctacggcgtcgt 12426425
Score = 44.1 bits (22), Expect = 0.029
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 36 tgagcatcgccatagaaacagc 57
||||||||||||||||||||||
Sbjct: 8916005 tgagcatcgccatagaaacagc 8915984
Score = 44.1 bits (22), Expect = 0.029
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 470 gtcgctgagctggcgttccggtgcttgcag 499
||||||||||||||||||| |||||||||
Sbjct: 6329558 gtcgctgagctggcgttccaatgcttgcag 6329587
Score = 40.1 bits (20), Expect = 0.46
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 269 aagagcgacgtgtacagcttcggcgtcgtgct 300
||||| || |||||||||||||| ||||||||
Sbjct: 4917323 aagagtgatgtgtacagcttcggggtcgtgct 4917354
>gb|AC015448.4|AC015448 Arabidopsis thaliana chromosome I BAC T14L22 genomic sequence, complete
sequence
Length = 95581
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 265 cgagaagagcgacgtgtacagcttcggcgtcgtgct 300
||||||||| ||||||||||||||||| || |||||
Sbjct: 40942 cgagaagagtgacgtgtacagcttcggtgtagtgct 40907
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 265 cgagaagagcgacgtgtacagcttcggcgtcgtgct 300
||||||||| ||||||||||||||||| || |||||
Sbjct: 35697 cgagaagagtgacgtgtacagcttcggtgtagtgct 35662
>gb|AC015446.4|AC015446 Arabidopsis thaliana chromosome I BAC F12G12 genomic sequence, complete
sequence
Length = 125632
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 266 gagaagagcgacgtgtacagcttcggcgtcgt 297
|||||||| ||||||||||||| |||||||||
Sbjct: 39694 gagaagagtgacgtgtacagctacggcgtcgt 39725
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 265 cgagaagagcgacgtgtacagctt 288
||||||||||||||||||||||||
Sbjct: 10301835 cgagaagagcgacgtgtacagctt 10301858
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 259 gctgaccgagaagagcgacgtgtacag 285
||||| |||||||||||||||||||||
Sbjct: 10391940 gctgaacgagaagagcgacgtgtacag 10391914
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 265 cgagaagagcgacgtgtacagcttcgg 291
|||||||||||| ||||||||||||||
Sbjct: 6865380 cgagaagagcgatgtgtacagcttcgg 6865406
>emb|AL078470.1|ATF19B15 Arabidopsis thaliana DNA chromosome 4, BAC clone F19B15 (ESSA project)
Length = 101679
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 265 cgagaagagcgacgtgtacagctt 288
||||||||||||||||||||||||
Sbjct: 100666 cgagaagagcgacgtgtacagctt 100689
>emb|AL161574.2|ATCHRIV70 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 70
Length = 198429
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 265 cgagaagagcgacgtgtacagctt 288
||||||||||||||||||||||||
Sbjct: 117139 cgagaagagcgacgtgtacagctt 117162
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 265 cgagaagagcgacgtgtacagcttcggcgtcgtgct 300
||||||||| ||||||||||||||||| || |||||
Sbjct: 3622527 cgagaagagtgacgtgtacagcttcggtgtagtgct 3622492
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 265 cgagaagagcgacgtgtacagcttcggcgtcgtgct 300
||||||||| ||||||||||||||||| || |||||
Sbjct: 3617282 cgagaagagtgacgtgtacagcttcggtgtagtgct 3617247
Score = 44.1 bits (22), Expect = 0.029
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 270 agagcgacgtgtacagcttcgg 291
||||||||||||||||||||||
Sbjct: 12645274 agagcgacgtgtacagcttcgg 12645253
Score = 42.1 bits (21), Expect = 0.12
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 265 cgagaagagcgacgtgtacagcttcggcgtcgt 297
|||||||||||| || ||||||||||| |||||
Sbjct: 9196296 cgagaagagcgatgtctacagcttcggagtcgt 9196328
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 473 gctgagctggcgttccggtg 492
||||||||||||||||||||
Sbjct: 10573263 gctgagctggcgttccggtg 10573282
>ref|NM_104066.1| Arabidopsis thaliana kinase AT1G51860 mRNA, complete cds
Length = 2673
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 265 cgagaagagcgacgtgtacagcttcggcgtcgtgct 300
||||||||| ||||||||||||||||| || |||||
Sbjct: 2289 cgagaagagtgacgtgtacagcttcggtgtagtgct 2324
>ref|NM_104067.1| Arabidopsis thaliana ATP binding / kinase/ protein kinase/ protein
serine/threonine kinase/ protein-tyrosine kinase
AT1G51870 mRNA, complete cds
Length = 2514
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 265 cgagaagagcgacgtgtacagcttcggcgtcgtgct 300
||||||||| ||||||||||||||||| || |||||
Sbjct: 2130 cgagaagagtgacgtgtacagcttcggtgtagtgct 2165
>ref|NM_103134.2| Arabidopsis thaliana ATP binding / protein kinase/ protein
serine/threonine kinase/ protein-tyrosine kinase
AT1G34110 mRNA, complete cds
Length = 3293
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 266 gagaagagcgacgtgtacagcttcggcgtcgt 297
|||||||| ||||||||||||| |||||||||
Sbjct: 2788 gagaagagtgacgtgtacagctacggcgtcgt 2819
>ref|NM_119062.3| Arabidopsis thaliana kinase AT4G29180 mRNA, complete cds
Length = 2939
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 265 cgagaagagcgacgtgtacagctt 288
||||||||||||||||||||||||
Sbjct: 2309 cgagaagagcgacgtgtacagctt 2332
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 48.1 bits (24), Expect = 0.002
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 265 cgagaagagcgacgtgtacagctt 288
||||||||||||||||||||||||
Sbjct: 14389065 cgagaagagcgacgtgtacagctt 14389088
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 259 gctgaccgagaagagcgacgtgtacag 285
||||| |||||||||||||||||||||
Sbjct: 14479170 gctgaacgagaagagcgacgtgtacag 14479144
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 265 cgagaagagcgacgtgtacagcttcgg 291
|||||||||||| ||||||||||||||
Sbjct: 10952631 cgagaagagcgatgtgtacagcttcgg 10952657
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 265 cgagaagagcgacgtgtacagcttcggcgtcgtgct 300
||||||||| ||||||||||||||||| || |||||
Sbjct: 19266932 cgagaagagtgacgtgtacagcttcggtgtagtgct 19266897
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 265 cgagaagagcgacgtgtacagcttcggcgtcgtgct 300
||||||||| ||||||||||||||||| || |||||
Sbjct: 19261687 cgagaagagtgacgtgtacagcttcggtgtagtgct 19261652
Score = 48.1 bits (24), Expect = 0.002
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 266 gagaagagcgacgtgtacagcttcggcgtcgt 297
|||||||| ||||||||||||| |||||||||
Sbjct: 12417659 gagaagagtgacgtgtacagctacggcgtcgt 12417628
Score = 44.1 bits (22), Expect = 0.029
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 270 agagcgacgtgtacagcttcgg 291
||||||||||||||||||||||
Sbjct: 28407616 agagcgacgtgtacagcttcgg 28407595
Score = 44.1 bits (22), Expect = 0.029
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 36 tgagcatcgccatagaaacagc 57
||||||||||||||||||||||
Sbjct: 8907336 tgagcatcgccatagaaacagc 8907315
Score = 44.1 bits (22), Expect = 0.029
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 470 gtcgctgagctggcgttccggtgcttgcag 499
||||||||||||||||||| |||||||||
Sbjct: 6329734 gtcgctgagctggcgttccaatgcttgcag 6329763
Score = 42.1 bits (21), Expect = 0.12
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 265 cgagaagagcgacgtgtacagcttcggcgtcgt 297
|||||||||||| || ||||||||||| |||||
Sbjct: 24958645 cgagaagagcgatgtctacagcttcggagtcgt 24958677
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 473 gctgagctggcgttccggtg 492
||||||||||||||||||||
Sbjct: 26335611 gctgagctggcgttccggtg 26335630
Score = 40.1 bits (20), Expect = 0.46
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 269 aagagcgacgtgtacagcttcggcgtcgtgct 300
||||| || |||||||||||||| ||||||||
Sbjct: 4917499 aagagtgatgtgtacagcttcggggtcgtgct 4917530
>gb|CW840916.1|CW840916 ET10666.Ds5.10.17.2002.jw68.406 Arabidopsis thaliana Landsberg Ds
insertion lines Arabidopsis thaliana genomic clone
ET10666, DNA sequence
Length = 406
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 259 gctgaccgagaagagcgacgtgtacag 285
||||| |||||||||||||||||||||
Sbjct: 227 gctgaacgagaagagcgacgtgtacag 253
>gb|AI995067.1|AI995067 701501658 A. thaliana, Ohio State clone set Arabidopsis thaliana
cDNA clone 701501658, mRNA sequence
Length = 522
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 265 cgagaagagcgacgtgtacagcttcgg 291
|||||||||||| ||||||||||||||
Sbjct: 478 cgagaagagcgatgtgtacagcttcgg 504
>gb|BX841390.1|BX841390 BX841390 Arabidopsis thaliana Hormone Treated Callus Col-0
Arabidopsis thaliana cDNA clone GSLTPGH25ZC06 3PRIM,
mRNA sequence
Length = 1089
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 265 cgagaagagcgacgtgtacagcttcgg 291
|||||||||||| ||||||||||||||
Sbjct: 699 cgagaagagcgatgtgtacagcttcgg 725
>gb|AV523351.1|AV523351 AV523351 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL25d02F 3', mRNA
sequence
Length = 585
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 265 cgagaagagcgacgtgtacagcttcgg 291
|||||||||||| ||||||||||||||
Sbjct: 386 cgagaagagcgatgtgtacagcttcgg 360
>emb|AL096692.1|F17A13 Arabidopsis thaliana clone F17A13, *** SEQUENCING IN PROGRESS ***
Length = 100310
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 259 gctgaccgagaagagcgacgtgtacag 285
||||| |||||||||||||||||||||
Sbjct: 89205 gctgaacgagaagagcgacgtgtacag 89179
>emb|AX505353.1| Sequence 48 from Patent WO0216655
Length = 2979
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 265 cgagaagagcgacgtgtacagcttcgg 291
|||||||||||| ||||||||||||||
Sbjct: 2676 cgagaagagcgatgtgtacagcttcgg 2702
>emb|AL022224.1|ATF1C12 Arabidopsis thaliana DNA chromosome 4, BAC clone F1C12 (ESSA project)
Length = 111945
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 265 cgagaagagcgacgtgtacagcttcgg 291
|||||||||||| ||||||||||||||
Sbjct: 82769 cgagaagagcgatgtgtacagcttcgg 82795
>emb|AL161552.2|ATCHRIV52 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 52
Length = 198427
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 265 cgagaagagcgacgtgtacagcttcgg 291
|||||||||||| ||||||||||||||
Sbjct: 150192 cgagaagagcgatgtgtacagcttcgg 150218
>emb|AL161575.2|ATCHRIV71 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 71
Length = 200001
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 259 gctgaccgagaagagcgacgtgtacag 285
||||| |||||||||||||||||||||
Sbjct: 13815 gctgaacgagaagagcgacgtgtacag 13789
>ref|NM_119090.1| Arabidopsis thaliana kinase AT4G29450 mRNA, complete cds
Length = 2592
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 259 gctgaccgagaagagcgacgtgtacag 285
||||| |||||||||||||||||||||
Sbjct: 2265 gctgaacgagaagagcgacgtgtacag 2291
>ref|NM_118146.3| Arabidopsis thaliana ATP binding / protein kinase/ protein
serine/threonine kinase/ protein-tyrosine kinase
AT4G20270 mRNA, complete cds
Length = 3295
Score = 46.1 bits (23), Expect = 0.007
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 265 cgagaagagcgacgtgtacagcttcgg 291
|||||||||||| ||||||||||||||
Sbjct: 2837 cgagaagagcgatgtgtacagcttcgg 2863
>gb|BH171695.1|BH171695 SALK_004672 Arabidopsis thaliana TDNA insertion lines Arabidopsis
thaliana genomic clone SALK_004672, DNA sequence
Length = 455
Score = 44.1 bits (22), Expect = 0.029
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 36 tgagcatcgccatagaaacagc 57
||||||||||||||||||||||
Sbjct: 139 tgagcatcgccatagaaacagc 160
>gb|BZ383875.1|BZ383875 SALK_134698.45.40.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_134698.45.40.x,
DNA sequence
Length = 294
Score = 44.1 bits (22), Expect = 0.029
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 270 agagcgacgtgtacagcttcgg 291
||||||||||||||||||||||
Sbjct: 171 agagcgacgtgtacagcttcgg 150
>gb|CA781389.1|CA781389 016G02AF Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA
sequence
Length = 531
Score = 44.1 bits (22), Expect = 0.029
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 36 tgagcatcgccatagaaacagc 57
||||||||||||||||||||||
Sbjct: 193 tgagcatcgccatagaaacagc 214
>gb|AV442775.1|AV442775 AV442775 Arabidopsis thaliana above-ground organ two to six-week
old Arabidopsis thaliana cDNA clone APZ08d08_r 5', mRNA
sequence
Length = 562
Score = 44.1 bits (22), Expect = 0.029
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 36 tgagcatcgccatagaaacagc 57
||||||||||||||||||||||
Sbjct: 293 tgagcatcgccatagaaacagc 314
>gb|AY052245.1| Arabidopsis thaliana At1g25390/F2J7_14 mRNA, complete cds
Length = 2153
Score = 44.1 bits (22), Expect = 0.029
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 36 tgagcatcgccatagaaacagc 57
||||||||||||||||||||||
Sbjct: 1236 tgagcatcgccatagaaacagc 1257
>emb|AJ522200.1|ATH522200 Arabidopsis thaliana T-DNA flanking sequence, left border, clone
287B08
Length = 357
Score = 44.1 bits (22), Expect = 0.029
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 470 gtcgctgagctggcgttccggtgcttgcag 499
||||||||||||||||||| |||||||||
Sbjct: 113 gtcgctgagctggcgttccaatgcttgcag 142
>gb|AC006434.5|AC006434 Genomic sequence for Arabidopsis thaliana BAC F10A5, complete sequence
Length = 129547
Score = 44.1 bits (22), Expect = 0.029
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 270 agagcgacgtgtacagcttcgg 291
||||||||||||||||||||||
Sbjct: 55360 agagcgacgtgtacagcttcgg 55381
>gb|AC013354.6|AC013354 Genomic sequence for Arabidopsis thaliana BAC F15H18 from chromosome I,
complete sequence
Length = 95327
Score = 44.1 bits (22), Expect = 0.029
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 470 gtcgctgagctggcgttccggtgcttgcag 499
||||||||||||||||||| |||||||||
Sbjct: 46883 gtcgctgagctggcgttccaatgcttgcag 46854
>gb|AC079281.4|AC079281 Arabidopsis thaliana chromosome 1 BAC F2J7 genomic sequence, complete
sequence
Length = 102540
Score = 44.1 bits (22), Expect = 0.029
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 36 tgagcatcgccatagaaacagc 57
||||||||||||||||||||||
Sbjct: 93905 tgagcatcgccatagaaacagc 93926
>dbj|AB006705.2| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MTH12
Length = 74877
Score = 44.1 bits (22), Expect = 0.029
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 266 gagaagagcgacgtgtacagcttcgg 291
||||||||||| ||||||||||||||
Sbjct: 23067 gagaagagcgatgtgtacagcttcgg 23092
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 44.1 bits (22), Expect = 0.029
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 266 gagaagagcgacgtgtacagcttcgg 291
||||||||||| ||||||||||||||
Sbjct: 21370036 gagaagagcgatgtgtacagcttcgg 21370061
Score = 42.1 bits (21), Expect = 0.12
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 265 cgagaagagcgacgtgtacagcttcggcgtcgt 297
||||||||| ||||| ||||||||||| |||||
Sbjct: 14071492 cgagaagagtgacgtttacagcttcggagtcgt 14071524
Score = 40.1 bits (20), Expect = 0.46
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 269 aagagcgacgtgtacagcttcggcgtcgtgct 300
|||||||| |||||||||||||| || |||||
Sbjct: 405772 aagagcgatgtgtacagcttcggggttgtgct 405741
>ref|NM_101697.1| Arabidopsis thaliana ATP binding / kinase/ protein kinase/ protein
serine/threonine kinase/ protein-tyrosine kinase
AT1G18390 mRNA, complete cds
Length = 1818
Score = 44.1 bits (22), Expect = 0.029
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 470 gtcgctgagctggcgttccggtgcttgcag 499
||||||||||||||||||| |||||||||
Sbjct: 1624 gtcgctgagctggcgttccaatgcttgcag 1653
>ref|NM_106216.1| Arabidopsis thaliana ATP binding / kinase/ protein serine/threonine
kinase AT1G75640 mRNA, complete cds
Length = 3423
Score = 44.1 bits (22), Expect = 0.029
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 270 agagcgacgtgtacagcttcgg 291
||||||||||||||||||||||
Sbjct: 3068 agagcgacgtgtacagcttcgg 3089
>ref|NM_125357.1| Arabidopsis thaliana ATP binding / kinase/ protein kinase/ protein
serine/threonine kinase/ protein-tyrosine kinase
AT5G59650 mRNA, complete cds
Length = 2679
Score = 44.1 bits (22), Expect = 0.029
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 266 gagaagagcgacgtgtacagcttcgg 291
||||||||||| ||||||||||||||
Sbjct: 2302 gagaagagcgatgtgtacagcttcgg 2327
>ref|NM_102350.2| Arabidopsis thaliana kinase AT1G25390 mRNA, complete cds
Length = 2132
Score = 44.1 bits (22), Expect = 0.029
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 36 tgagcatcgccatagaaacagc 57
||||||||||||||||||||||
Sbjct: 1235 tgagcatcgccatagaaacagc 1256
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 44.1 bits (22), Expect = 0.029
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 266 gagaagagcgacgtgtacagcttcgg 291
||||||||||| ||||||||||||||
Sbjct: 24051949 gagaagagcgatgtgtacagcttcgg 24051974
Score = 42.1 bits (21), Expect = 0.12
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 265 cgagaagagcgacgtgtacagcttcggcgtcgt 297
||||||||| ||||| ||||||||||| |||||
Sbjct: 15282153 cgagaagagtgacgtttacagcttcggagtcgt 15282185
Score = 40.1 bits (20), Expect = 0.46
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 269 aagagcgacgtgtacagcttcggcgtcgtgct 300
|||||||| |||||||||||||| || |||||
Sbjct: 406215 aagagcgatgtgtacagcttcggggttgtgct 406184
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 150,505
Number of Sequences: 1013581
Number of extensions: 150505
Number of successful extensions: 10290
Number of sequences better than 0.5: 91
Number of HSP's better than 0.5 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8957
Number of HSP's gapped (non-prelim): 1333
length of query: 644
length of database: 908,940,872
effective HSP length: 20
effective length of query: 624
effective length of database: 888,669,252
effective search space: 554529613248
effective search space used: 554529613248
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)