BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAZ3f05.yg.3.1
(1626 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV553274.1|AV553274 AV553274 Arabidopsis thaliana roots ... 54 8e-005
gb|AY099704.1| Arabidopsis thaliana alpha-mannosidase (At5g... 54 8e-005
gb|BT000301.1| Arabidopsis thaliana alpha-mannosidase (At5g... 54 8e-005
ref|NM_121401.4| Arabidopsis thaliana alpha-mannosidase AT5... 54 8e-005
ref|NM_001036801.1| Arabidopsis thaliana alpha-mannosidase ... 54 8e-005
ref|NM_180706.2| Arabidopsis thaliana alpha-mannosidase AT5... 54 8e-005
gb|AQ955552.1|AQ955552 LERAE66TF LERA Arabidopsis thaliana ... 50 0.001
gb|AQ955553.1|AQ955553 LERAE66TR LERA Arabidopsis thaliana ... 50 0.001
gb|BZ764419.1|BZ764419 SALK_124637.47.20.x Arabidopsis thal... 50 0.001
dbj|AB005230.2| Arabidopsis thaliana genomic DNA, chromosom... 50 0.001
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 50 0.001
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 50 0.001
>gb|AV553274.1|AV553274 AV553274 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ58g08R 5', mRNA sequence
Length = 564
Score = 54.0 bits (27), Expect = 8e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 492 aaaacattctacactgattccagtggacgtgatttcatcaaaaggat 538
||||| |||||||| ||||| ||||||||||||| |||||||||||
Sbjct: 235 aaaactttctacacggattcaagtggacgtgattatatcaaaaggat 281
>gb|AY099704.1| Arabidopsis thaliana alpha-mannosidase (At5g13980) mRNA, complete cds
Length = 3290
Score = 54.0 bits (27), Expect = 8e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 492 aaaacattctacactgattccagtggacgtgatttcatcaaaaggat 538
||||| |||||||| ||||| ||||||||||||| |||||||||||
Sbjct: 2330 aaaactttctacacggattcaagtggacgtgattatatcaaaaggat 2376
>gb|BT000301.1| Arabidopsis thaliana alpha-mannosidase (At5g13980) mRNA, complete cds
Length = 3127
Score = 54.0 bits (27), Expect = 8e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 492 aaaacattctacactgattccagtggacgtgatttcatcaaaaggat 538
||||| |||||||| ||||| ||||||||||||| |||||||||||
Sbjct: 2200 aaaactttctacacggattcaagtggacgtgattatatcaaaaggat 2246
>ref|NM_121401.4| Arabidopsis thaliana alpha-mannosidase AT5G13980 transcript variant
AT5G13980.2 mRNA, complete cds
Length = 3309
Score = 54.0 bits (27), Expect = 8e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 492 aaaacattctacactgattccagtggacgtgatttcatcaaaaggat 538
||||| |||||||| ||||| ||||||||||||| |||||||||||
Sbjct: 2330 aaaactttctacacggattcaagtggacgtgattatatcaaaaggat 2376
>ref|NM_001036801.1| Arabidopsis thaliana alpha-mannosidase AT5G13980 transcript variant
AT5G13980.3 mRNA, complete cds
Length = 3327
Score = 54.0 bits (27), Expect = 8e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 492 aaaacattctacactgattccagtggacgtgatttcatcaaaaggat 538
||||| |||||||| ||||| ||||||||||||| |||||||||||
Sbjct: 2330 aaaactttctacacggattcaagtggacgtgattatatcaaaaggat 2376
>ref|NM_180706.2| Arabidopsis thaliana alpha-mannosidase AT5G13980 transcript variant
AT5G13980.1 mRNA, complete cds
Length = 3296
Score = 54.0 bits (27), Expect = 8e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 492 aaaacattctacactgattccagtggacgtgatttcatcaaaaggat 538
||||| |||||||| ||||| ||||||||||||| |||||||||||
Sbjct: 2330 aaaactttctacacggattcaagtggacgtgattatatcaaaaggat 2376
>gb|AQ955552.1|AQ955552 LERAE66TF LERA Arabidopsis thaliana genomic clone LERAE66, DNA
sequence
Length = 766
Score = 50.1 bits (25), Expect = 0.001
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 492 aaaacattctacactgattccagtggacgtgatttcatcaaaagg 536
||||| |||||||| ||||| ||||||||||||| |||||||||
Sbjct: 347 aaaactttctacacggattcaagtggacgtgattatatcaaaagg 391
>gb|AQ955553.1|AQ955553 LERAE66TR LERA Arabidopsis thaliana genomic clone LERAE66, DNA
sequence
Length = 720
Score = 50.1 bits (25), Expect = 0.001
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 492 aaaacattctacactgattccagtggacgtgatttcatcaaaagg 536
||||| |||||||| ||||| ||||||||||||| |||||||||
Sbjct: 590 aaaactttctacacggattcaagtggacgtgattatatcaaaagg 546
>gb|BZ764419.1|BZ764419 SALK_124637.47.20.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_124637.47.20.x,
DNA sequence
Length = 405
Score = 50.1 bits (25), Expect = 0.001
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 492 aaaacattctacactgattccagtggacgtgatttcatcaaaagg 536
||||| |||||||| ||||| ||||||||||||| |||||||||
Sbjct: 174 aaaactttctacacggattcaagtggacgtgattatatcaaaagg 218
>dbj|AB005230.2| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAC12
Length = 74613
Score = 50.1 bits (25), Expect = 0.001
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 492 aaaacattctacactgattccagtggacgtgatttcatcaaaagg 536
||||| |||||||| ||||| ||||||||||||| |||||||||
Sbjct: 63218 aaaactttctacacggattcaagtggacgtgattatatcaaaagg 63262
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 50.1 bits (25), Expect = 0.001
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 492 aaaacattctacactgattccagtggacgtgatttcatcaaaagg 536
||||| |||||||| ||||| ||||||||||||| |||||||||
Sbjct: 4305721 aaaactttctacacggattcaagtggacgtgattatatcaaaagg 4305765
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 50.1 bits (25), Expect = 0.001
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 492 aaaacattctacactgattccagtggacgtgatttcatcaaaagg 536
||||| |||||||| ||||| ||||||||||||| |||||||||
Sbjct: 4512748 aaaactttctacacggattcaagtggacgtgattatatcaaaagg 4512792
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 928,537
Number of Sequences: 1013581
Number of extensions: 928537
Number of successful extensions: 75104
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74205
Number of HSP's gapped (non-prelim): 899
length of query: 1626
length of database: 908,940,872
effective HSP length: 21
effective length of query: 1605
effective length of database: 887,655,671
effective search space: 1424687351955
effective search space used: 1424687351955
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)