BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAM14e11.yg.2.1
(197 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 88 6e-016
gb|AY078949.1| Arabidopsis thaliana At1g04920/F13M7_7 mRNA,... 88 6e-016
gb|BT002210.1| Arabidopsis thaliana At1g04920/F13M7_7 mRNA,... 88 6e-016
gb|AC004809.1|F13M7 Arabidopsis thaliana chromosome 1 BAC F... 88 6e-016
ref|NM_100370.2| Arabidopsis thaliana transferase, transfer... 88 6e-016
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 88 6e-016
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 87.7 bits (44), Expect = 6e-016
Identities = 101/120 (84%)
Strand = Plus / Plus
Query: 5 tccccactgttcatcaatctcctgccttgtgctggtgatgacaagctctgacgcatccag 64
||||||||||||||||||||||||||| ||||| || || |||||||||| ||||||||
Sbjct: 1394402 tccccactgttcatcaatctcctgcctcgtgcttgttataacaagctctgcagcatccag 1394461
Query: 65 ggccagctcctcaccctcgatacgcctcatgatcttgtatgttgaatcgatctcctcctt 124
| |||||||| ||||||| | |||| ||||||| ||||| |||| || ||||||||
Sbjct: 1394462 agatagctcctcggcctcgatcctcctcttgatcttatatgtggaatttatatcctcctt 1394521
>gb|AY078949.1| Arabidopsis thaliana At1g04920/F13M7_7 mRNA, complete cds
Length = 3471
Score = 87.7 bits (44), Expect = 6e-016
Identities = 101/120 (84%)
Strand = Plus / Minus
Query: 5 tccccactgttcatcaatctcctgccttgtgctggtgatgacaagctctgacgcatccag 64
||||||||||||||||||||||||||| ||||| || || |||||||||| ||||||||
Sbjct: 1299 tccccactgttcatcaatctcctgcctcgtgcttgttataacaagctctgcagcatccag 1240
Query: 65 ggccagctcctcaccctcgatacgcctcatgatcttgtatgttgaatcgatctcctcctt 124
| |||||||| ||||||| | |||| ||||||| ||||| |||| || ||||||||
Sbjct: 1239 agatagctcctcggcctcgatcctcctcttgatcttatatgtggaatttatatcctcctt 1180
>gb|BT002210.1| Arabidopsis thaliana At1g04920/F13M7_7 mRNA, complete cds
Length = 3189
Score = 87.7 bits (44), Expect = 6e-016
Identities = 101/120 (84%)
Strand = Plus / Minus
Query: 5 tccccactgttcatcaatctcctgccttgtgctggtgatgacaagctctgacgcatccag 64
||||||||||||||||||||||||||| ||||| || || |||||||||| ||||||||
Sbjct: 1191 tccccactgttcatcaatctcctgcctcgtgcttgttataacaagctctgcagcatccag 1132
Query: 65 ggccagctcctcaccctcgatacgcctcatgatcttgtatgttgaatcgatctcctcctt 124
| |||||||| ||||||| | |||| ||||||| ||||| |||| || ||||||||
Sbjct: 1131 agatagctcctcggcctcgatcctcctcttgatcttatatgtggaatttatatcctcctt 1072
>gb|AC004809.1|F13M7 Arabidopsis thaliana chromosome 1 BAC F13M7 sequence, complete sequence
Length = 89713
Score = 87.7 bits (44), Expect = 6e-016
Identities = 101/120 (84%)
Strand = Plus / Minus
Query: 5 tccccactgttcatcaatctcctgccttgtgctggtgatgacaagctctgacgcatccag 64
||||||||||||||||||||||||||| ||||| || || |||||||||| ||||||||
Sbjct: 28268 tccccactgttcatcaatctcctgcctcgtgcttgttataacaagctctgcagcatccag 28209
Query: 65 ggccagctcctcaccctcgatacgcctcatgatcttgtatgttgaatcgatctcctcctt 124
| |||||||| ||||||| | |||| ||||||| ||||| |||| || ||||||||
Sbjct: 28208 agatagctcctcggcctcgatcctcctcttgatcttatatgtggaatttatatcctcctt 28149
>ref|NM_100370.2| Arabidopsis thaliana transferase, transferring glycosyl groups
AT1G04920 mRNA, complete cds
Length = 3469
Score = 87.7 bits (44), Expect = 6e-016
Identities = 101/120 (84%)
Strand = Plus / Minus
Query: 5 tccccactgttcatcaatctcctgccttgtgctggtgatgacaagctctgacgcatccag 64
||||||||||||||||||||||||||| ||||| || || |||||||||| ||||||||
Sbjct: 1299 tccccactgttcatcaatctcctgcctcgtgcttgttataacaagctctgcagcatccag 1240
Query: 65 ggccagctcctcaccctcgatacgcctcatgatcttgtatgttgaatcgatctcctcctt 124
| |||||||| ||||||| | |||| ||||||| ||||| |||| || ||||||||
Sbjct: 1239 agatagctcctcggcctcgatcctcctcttgatcttatatgtggaatttatatcctcctt 1180
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 87.7 bits (44), Expect = 6e-016
Identities = 101/120 (84%)
Strand = Plus / Plus
Query: 5 tccccactgttcatcaatctcctgccttgtgctggtgatgacaagctctgacgcatccag 64
||||||||||||||||||||||||||| ||||| || || |||||||||| ||||||||
Sbjct: 1394326 tccccactgttcatcaatctcctgcctcgtgcttgttataacaagctctgcagcatccag 1394385
Query: 65 ggccagctcctcaccctcgatacgcctcatgatcttgtatgttgaatcgatctcctcctt 124
| |||||||| ||||||| | |||| ||||||| ||||| |||| || ||||||||
Sbjct: 1394386 agatagctcctcggcctcgatcctcctcttgatcttatatgtggaatttatatcctcctt 1394445
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 82,518
Number of Sequences: 1013581
Number of extensions: 82518
Number of successful extensions: 22768
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22563
Number of HSP's gapped (non-prelim): 205
length of query: 197
length of database: 908,940,872
effective HSP length: 19
effective length of query: 178
effective length of database: 889,682,833
effective search space: 158363544274
effective search space used: 158363544274
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)