BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAI15h08.yg.2.1
(557 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AB049934.1| Arabidopsis thaliana mRNA for cytokinin rec... 56 7e-006
dbj|AB049935.1| Arabidopsis thaliana mRNA for cytokinin rec... 56 7e-006
dbj|AB046871.1| Arabidopsis thaliana AHK4 mRNA for histidin... 56 7e-006
emb|AX537479.1| Sequence 5 from Patent EP1241182 56 7e-006
emb|AJ278528.1|ATH278528 Arabidopsis thaliana mRNA for puta... 56 7e-006
emb|AJ278529.1|ATH278529 Arabidopsis thaliana mRNA for puta... 56 7e-006
emb|AJ278530.1|ATH278530 Arabidopsis thaliana mRNA for puta... 56 7e-006
emb|CS063639.1| Sequence 1 from Patent EP1522586 56 7e-006
ref|NM_126244.2| Arabidopsis thaliana WOL (CYTOKININ RESPON... 56 7e-006
ref|NM_179594.1| Arabidopsis thaliana WOL (CYTOKININ RESPON... 56 7e-006
ref|NM_201667.1| Arabidopsis thaliana WOL (CYTOKININ RESPON... 56 7e-006
dbj|DD159606.1| Transformed Cell co-expressing both of cyto... 56 7e-006
>dbj|AB049934.1| Arabidopsis thaliana mRNA for cytokinin receptor CRE1a, complete
cds
Length = 3649
Score = 56.0 bits (28), Expect = 7e-006
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 446 caaaatattctcacggtcctcctcgccnnacatcatgtcgag 487
||||||||||||||| ||||||||||| ||||||| |||||
Sbjct: 901 caaaatattctcacgatcctcctcgcctgacatcatatcgag 860
>dbj|AB049935.1| Arabidopsis thaliana mRNA for cytokinin receptor CRE1b, complete
cds
Length = 3694
Score = 56.0 bits (28), Expect = 7e-006
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 446 caaaatattctcacggtcctcctcgccnnacatcatgtcgag 487
||||||||||||||| ||||||||||| ||||||| |||||
Sbjct: 938 caaaatattctcacgatcctcctcgcctgacatcatatcgag 897
>dbj|AB046871.1| Arabidopsis thaliana AHK4 mRNA for histidine kinase, complete cds
Length = 3243
Score = 56.0 bits (28), Expect = 7e-006
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 446 caaaatattctcacggtcctcctcgccnnacatcatgtcgag 487
||||||||||||||| ||||||||||| ||||||| |||||
Sbjct: 870 caaaatattctcacgatcctcctcgcctgacatcatatcgag 829
>emb|AX537479.1| Sequence 5 from Patent EP1241182
Length = 3174
Score = 56.0 bits (28), Expect = 7e-006
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 446 caaaatattctcacggtcctcctcgccnnacatcatgtcgag 487
||||||||||||||| ||||||||||| ||||||| |||||
Sbjct: 801 caaaatattctcacgatcctcctcgcctgacatcatatcgag 760
>emb|AJ278528.1|ATH278528 Arabidopsis thaliana mRNA for putative histidine kinase receptor
(wol gene), splice variant 1
Length = 3620
Score = 56.0 bits (28), Expect = 7e-006
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 446 caaaatattctcacggtcctcctcgccnnacatcatgtcgag 487
||||||||||||||| ||||||||||| ||||||| |||||
Sbjct: 940 caaaatattctcacgatcctcctcgcctgacatcatatcgag 899
>emb|AJ278529.1|ATH278529 Arabidopsis thaliana mRNA for putative histidine kinase receptor
(wol gene), splice variant 2
Length = 3503
Score = 56.0 bits (28), Expect = 7e-006
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 446 caaaatattctcacggtcctcctcgccnnacatcatgtcgag 487
||||||||||||||| ||||||||||| ||||||| |||||
Sbjct: 823 caaaatattctcacgatcctcctcgcctgacatcatatcgag 782
>emb|AJ278530.1|ATH278530 Arabidopsis thaliana mRNA for putative histidine kinase receptor
(wol gene), splice variant 3
Length = 3612
Score = 56.0 bits (28), Expect = 7e-006
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 446 caaaatattctcacggtcctcctcgccnnacatcatgtcgag 487
||||||||||||||| ||||||||||| ||||||| |||||
Sbjct: 932 caaaatattctcacgatcctcctcgcctgacatcatatcgag 891
>emb|CS063639.1| Sequence 1 from Patent EP1522586
Length = 3174
Score = 56.0 bits (28), Expect = 7e-006
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 446 caaaatattctcacggtcctcctcgccnnacatcatgtcgag 487
||||||||||||||| ||||||||||| ||||||| |||||
Sbjct: 801 caaaatattctcacgatcctcctcgcctgacatcatatcgag 760
>ref|NM_126244.2| Arabidopsis thaliana WOL (CYTOKININ RESPONSE 1) AT2G01830 (WOL)
transcript variant AT2G01830.1 mRNA, complete cds
Length = 3637
Score = 56.0 bits (28), Expect = 7e-006
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 446 caaaatattctcacggtcctcctcgccnnacatcatgtcgag 487
||||||||||||||| ||||||||||| ||||||| |||||
Sbjct: 935 caaaatattctcacgatcctcctcgcctgacatcatatcgag 894
>ref|NM_179594.1| Arabidopsis thaliana WOL (CYTOKININ RESPONSE 1) AT2G01830 (WOL)
transcript variant AT2G01830.2 mRNA, complete cds
Length = 3658
Score = 56.0 bits (28), Expect = 7e-006
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 446 caaaatattctcacggtcctcctcgccnnacatcatgtcgag 487
||||||||||||||| ||||||||||| ||||||| |||||
Sbjct: 936 caaaatattctcacgatcctcctcgcctgacatcatatcgag 895
>ref|NM_201667.1| Arabidopsis thaliana WOL (CYTOKININ RESPONSE 1) AT2G01830 (WOL)
transcript variant AT2G01830.3 mRNA, complete cds
Length = 3654
Score = 56.0 bits (28), Expect = 7e-006
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 446 caaaatattctcacggtcctcctcgccnnacatcatgtcgag 487
||||||||||||||| ||||||||||| ||||||| |||||
Sbjct: 932 caaaatattctcacgatcctcctcgcctgacatcatatcgag 891
>dbj|DD159606.1| Transformed Cell co-expressing both of cytokinin receptor and
cytokinin biosynthesizing enzyme
Length = 3174
Score = 56.0 bits (28), Expect = 7e-006
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 446 caaaatattctcacggtcctcctcgccnnacatcatgtcgag 487
||||||||||||||| ||||||||||| ||||||| |||||
Sbjct: 801 caaaatattctcacgatcctcctcgcctgacatcatatcgag 760
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 245,264
Number of Sequences: 1013581
Number of extensions: 245264
Number of successful extensions: 18434
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18398
Number of HSP's gapped (non-prelim): 36
length of query: 557
length of database: 908,940,872
effective HSP length: 20
effective length of query: 537
effective length of database: 888,669,252
effective search space: 477215388324
effective search space used: 477215388324
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)