BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF41c07.yg.2.1
(691 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_112317.1| Arabidopsis thaliana ATGSL04 (GLUCAN SYNTH... 74 4e-011
gb|AF162444.1|T32N4 Arabidopsis thaliana BAC T32N4 70 6e-010
emb|AX059538.1| Sequence 271 from Patent WO0055325 70 6e-010
gb|AC012392.1|AC012392 Genomic Sequence For Arabidopsis tha... 70 6e-010
emb|AJ270058.1| Arabidopsis thaliana DNA chromosome 4, shor... 70 6e-010
emb|AL161502.2|ATCHRIV14 Arabidopsis thaliana DNA chromosom... 70 6e-010
ref|NM_116736.1| Arabidopsis thaliana ATGSL1 (GLUCAN SYNTHA... 70 6e-010
ref|NM_179940.1| Arabidopsis thaliana ATGSL08 (GLUCAN SYNTH... 70 6e-010
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 70 6e-010
emb|AL094618.1|CNS00XA4 Arabidopsis thaliana genome survey ... 66 9e-009
emb|AL094620.1|CNS00XA6 Arabidopsis thaliana genome survey ... 66 9e-009
emb|AX651854.1| Sequence 720 from Patent WO03000898 66 9e-009
ref|NM_121303.3| Arabidopsis thaliana ATGSL12 (GLUCAN SYNTH... 66 9e-009
emb|CR356858.1| Arabidopsis thaliana T-DNA flanking sequenc... 62 1e-007
gb|AC006922.7| Arabidopsis thaliana chromosome 2 clone T1J8... 62 1e-007
ref|NM_111596.1| Arabidopsis thaliana ATGSL10 (GLUCAN SYNTH... 62 1e-007
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 62 1e-007
emb|BX824879.1|CNS0A7RK Arabidopsis thaliana Full-length cD... 60 5e-007
gb|BH253522.1|BH253522 SALK_015030 Arabidopsis thaliana TDN... 58 2e-006
dbj|AB023038.1| Arabidopsis thaliana genomic DNA, chromosom... 58 2e-006
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 58 2e-006
ref|NM_100528.1| Arabidopsis thaliana ATGSL07 (GLUCAN SYNTH... 58 2e-006
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 58 2e-006
emb|AL938665.1| Arabidopsis thaliana T-DNA flanking sequenc... 54 3e-005
gb|AC012395.5|ATAC012395 Arabidopsis thaliana chromosome II... 54 3e-005
gb|AU237455.1|AU237455 AU237455 RAFL16 Arabidopsis thaliana... 50 5e-004
gb|AF237733.1|AF237733 Arabidopsis thaliana callose synthas... 50 5e-004
emb|AX412747.1| Sequence 511 from Patent WO0222675 50 5e-004
emb|AX508002.1| Sequence 2697 from Patent WO0216655 50 5e-004
ref|NM_100436.2| Arabidopsis thaliana CALS1 (CALLOSE SYNTHA... 50 5e-004
gb|BZ661216.1|BZ661216 SALK_024682.27.95.x Arabidopsis thal... 48 0.002
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 48 0.002
gb|AC007592.4|AC007592 Genomic sequence for Arabidopsis tha... 48 0.002
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 48 0.002
emb|AX506240.1| Sequence 935 from Patent WO0216655 42 0.12
emb|AL161497.2|ATCHRIV9 Arabidopsis thaliana DNA chromosome... 42 0.12
gb|AC005142.2| Arabidopsis thaliana BAC T5L23 from chromoso... 42 0.12
gb|AY337762.1| Arabidopsis thaliana LAP1 (At2g13680) mRNA, ... 42 0.12
ref|NM_116593.3| Arabidopsis thaliana ATGSL05 (GLUCAN SYNTH... 42 0.12
gb|AF071527.1| Arabidopsis thaliana BAC F9H3, from chromoso... 42 0.12
gb|CL503278.1|CL503278 SAIL_721_D11.v1 SAIL Collection Arab... 40 0.49
>ref|NM_112317.1| Arabidopsis thaliana ATGSL04 (GLUCAN SYNTHASE-LIKE 4);
1,3-beta-glucan synthase/ transferase, transferring
glycosyl groups AT3G14570 (ATGSL04) mRNA, complete cds
Length = 5922
Score = 73.8 bits (37), Expect = 4e-011
Identities = 100/121 (82%)
Strand = Plus / Minus
Query: 418 gaaattcttcaagtaaatttctcattttcattgcttcctccaagtagttatcctgattca 477
||||||||| ||| | |||||||||||| | || || |||| ||||| ||| || ||||
Sbjct: 4165 gaaattcttgaaggagatttctcattttgaaagcctcttccaggtagtgatcttggttca 4106
Query: 478 tatcgatcgtctgaactgcatctcctcgagtgaagattatggcatggttttggttctcag 537
| ||||||||||||| ||| || ||||||||||| | |||||| || ||||| |||||||
Sbjct: 4105 tgtcgatcgtctgaagtgcttcacctcgagtgaaaactatggcgtgattttgattctcag 4046
Query: 538 g 538
|
Sbjct: 4045 g 4045
>gb|AF162444.1|T32N4 Arabidopsis thaliana BAC T32N4
Length = 80196
Score = 69.9 bits (35), Expect = 6e-010
Identities = 78/93 (83%)
Strand = Plus / Minus
Query: 464 gttatcctgattcatatcgatcgtctgaactgcatctcctcgagtgaagattatggcatg 523
|||||| ||||||||||| || ||||||| ||||||||||| || ||||||| |||||
Sbjct: 11130 gttatcttgattcatatcaatggtctgaatcgcatctcctcgtgtaaagattagagcatg 11071
Query: 524 gttttggttctcaggtntgccttcaccnagctt 556
||||||||| || ||| | || ||||| |||||
Sbjct: 11070 gttttggttttctggttttccctcaccaagctt 11038
>emb|AX059538.1| Sequence 271 from Patent WO0055325
Length = 47489
Score = 69.9 bits (35), Expect = 6e-010
Identities = 78/93 (83%)
Strand = Plus / Minus
Query: 464 gttatcctgattcatatcgatcgtctgaactgcatctcctcgagtgaagattatggcatg 523
|||||| ||||||||||| || ||||||| ||||||||||| || ||||||| |||||
Sbjct: 1633 gttatcttgattcatatcaatggtctgaatcgcatctcctcgtgtaaagattagagcatg 1574
Query: 524 gttttggttctcaggtntgccttcaccnagctt 556
||||||||| || ||| | || ||||| |||||
Sbjct: 1573 gttttggttttctggttttccctcaccaagctt 1541
>gb|AC012392.1|AC012392 Genomic Sequence For Arabidopsis thaliana clone C17L7, Chromosome IV,
complete sequence
Length = 183147
Score = 69.9 bits (35), Expect = 6e-010
Identities = 78/93 (83%)
Strand = Plus / Plus
Query: 464 gttatcctgattcatatcgatcgtctgaactgcatctcctcgagtgaagattatggcatg 523
|||||| ||||||||||| || ||||||| ||||||||||| || ||||||| |||||
Sbjct: 180454 gttatcttgattcatatcaatggtctgaatcgcatctcctcgtgtaaagattagagcatg 180513
Query: 524 gttttggttctcaggtntgccttcaccnagctt 556
||||||||| || ||| | || ||||| |||||
Sbjct: 180514 gttttggttttctggttttccctcaccaagctt 180546
>emb|AJ270058.1| Arabidopsis thaliana DNA chromosome 4, short arm
Length = 3052119
Score = 69.9 bits (35), Expect = 6e-010
Identities = 78/93 (83%)
Strand = Plus / Minus
Query: 464 gttatcctgattcatatcgatcgtctgaactgcatctcctcgagtgaagattatggcatg 523
|||||| ||||||||||| || ||||||| ||||||||||| || ||||||| |||||
Sbjct: 2539458 gttatcttgattcatatcaatggtctgaatcgcatctcctcgtgtaaagattagagcatg 2539399
Query: 524 gttttggttctcaggtntgccttcaccnagctt 556
||||||||| || ||| | || ||||| |||||
Sbjct: 2539398 gttttggttttctggttttccctcaccaagctt 2539366
Score = 42.1 bits (21), Expect = 0.12
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1 acacatctcggctgagaacttgctc 25
||||||||||||||||||| |||||
Sbjct: 1576656 acacatctcggctgagaacctgctc 1576632
>emb|AL161502.2|ATCHRIV14 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 14
Length = 198563
Score = 69.9 bits (35), Expect = 6e-010
Identities = 78/93 (83%)
Strand = Plus / Minus
Query: 464 gttatcctgattcatatcgatcgtctgaactgcatctcctcgagtgaagattatggcatg 523
|||||| ||||||||||| || ||||||| ||||||||||| || ||||||| |||||
Sbjct: 72655 gttatcttgattcatatcaatggtctgaatcgcatctcctcgtgtaaagattagagcatg 72596
Query: 524 gttttggttctcaggtntgccttcaccnagctt 556
||||||||| || ||| | || ||||| |||||
Sbjct: 72595 gttttggttttctggttttccctcaccaagctt 72563
>ref|NM_116736.1| Arabidopsis thaliana ATGSL1 (GLUCAN SYNTHASE LIKE-1); 1,3-beta-glucan
synthase/ transferase, transferring glycosyl groups
AT4G04970 (ATGSL1) mRNA, complete cds
Length = 5827
Score = 69.9 bits (35), Expect = 6e-010
Identities = 78/93 (83%)
Strand = Plus / Minus
Query: 464 gttatcctgattcatatcgatcgtctgaactgcatctcctcgagtgaagattatggcatg 523
|||||| ||||||||||| || ||||||| ||||||||||| || ||||||| |||||
Sbjct: 3513 gttatcttgattcatatcaatggtctgaatcgcatctcctcgtgtaaagattagagcatg 3454
Query: 524 gttttggttctcaggtntgccttcaccnagctt 556
||||||||| || ||| | || ||||| |||||
Sbjct: 3453 gttttggttttctggttttccctcaccaagctt 3421
>ref|NM_179940.1| Arabidopsis thaliana ATGSL08 (GLUCAN SYNTHASE-LIKE 8);
1,3-beta-glucan synthase/ transferase, transferring
glycosyl groups AT2G36850 (ATGSL08) mRNA, complete cds
Length = 5281
Score = 69.9 bits (35), Expect = 6e-010
Identities = 65/75 (86%)
Strand = Plus / Minus
Query: 416 atgaaattcttcaagtaaatttctcattttcattgcttcctccaagtagttatcctgatt 475
|||||| || ||||||| |||||||||||| ||||||||||||| || || ||||||||
Sbjct: 3357 atgaaactcctcaagtagatttctcattttgattgcttcctccagataattgtcctgatt 3298
Query: 476 catatcgatcgtctg 490
|||||| || |||||
Sbjct: 3297 catatctatggtctg 3283
Score = 61.9 bits (31), Expect = 1e-007
Identities = 91/111 (81%)
Strand = Plus / Minus
Query: 153 gcatatatatcttcgcttatattaatcactcgagacgccttgctaatgccacctcgggtt 212
|||||||||||||| || || ||||| || || || || ||||| || || || || |||
Sbjct: 3671 gcatatatatcttcactgatgttaataacacgggatgctttgctgattcctccgcgagtt 3612
Query: 213 atgtgaaatatccgatcaaaaacatcaggatgtccatagtgcattcgaact 263
|| |||||||| | ||| || ||||| ||||| ||||||||||||||||||
Sbjct: 3611 atatgaaatattctatcgaacacatctggatgcccatagtgcattcgaact 3561
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 69.9 bits (35), Expect = 6e-010
Identities = 78/93 (83%)
Strand = Plus / Minus
Query: 464 gttatcctgattcatatcgatcgtctgaactgcatctcctcgagtgaagattatggcatg 523
|||||| ||||||||||| || ||||||| ||||||||||| || ||||||| |||||
Sbjct: 2540638 gttatcttgattcatatcaatggtctgaatcgcatctcctcgtgtaaagattagagcatg 2540579
Query: 524 gttttggttctcaggtntgccttcaccnagctt 556
||||||||| || ||| | || ||||| |||||
Sbjct: 2540578 gttttggttttctggttttccctcaccaagctt 2540546
Score = 42.1 bits (21), Expect = 0.12
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1 acacatctcggctgagaacttgctc 25
||||||||||||||||||| |||||
Sbjct: 1577841 acacatctcggctgagaacctgctc 1577817
>emb|AL094618.1|CNS00XA4 Arabidopsis thaliana genome survey sequence T7 end of BAC T13I7 of
TAMU library from strain Columbia of Arabidopsis
thaliana, genomic survey sequence
Length = 425
Score = 65.9 bits (33), Expect = 9e-009
Identities = 60/69 (86%)
Strand = Plus / Minus
Query: 464 gttatcctgattcatatcgatcgtctgaactgcatctcctcgagtgaagattatggcatg 523
|||||| ||||||||||| || ||||||| ||||||||||| || ||||||| |||||
Sbjct: 87 gttatcttgattcatatcaatggtctgaatcgcatctcctcgtgtaaagattagagcatg 28
Query: 524 gttttggtt 532
|||||||||
Sbjct: 27 gttttggtt 19
>emb|AL094620.1|CNS00XA6 Arabidopsis thaliana genome survey sequence T7 end of BAC T13I8 of
TAMU library from strain Columbia of Arabidopsis
thaliana, genomic survey sequence
Length = 660
Score = 65.9 bits (33), Expect = 9e-009
Identities = 60/69 (86%)
Strand = Plus / Minus
Query: 464 gttatcctgattcatatcgatcgtctgaactgcatctcctcgagtgaagattatggcatg 523
|||||| ||||||||||| || ||||||| ||||||||||| || ||||||| |||||
Sbjct: 87 gttatcttgattcatatcaatggtctgaatcgcatctcctcgtgtaaagattagagcatg 28
Query: 524 gttttggtt 532
|||||||||
Sbjct: 27 gttttggtt 19
>emb|AX651854.1| Sequence 720 from Patent WO03000898
Length = 5892
Score = 65.9 bits (33), Expect = 9e-009
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 418 gaaattcttcaagtaaatttctcattttcattgcttcctccaagtagttatcctgattca 477
||||||||| ||| ||||| ||||| || | |||||||||| ||| |||||||||||||
Sbjct: 4222 gaaattcttgaagcaaattcctcatctttaacgcttcctccatgtaattatcctgattca 4163
Query: 478 tatcgatcgtctg 490
||||||| |||||
Sbjct: 4162 tatcgattgtctg 4150
>ref|NM_121303.3| Arabidopsis thaliana ATGSL12 (GLUCAN SYNTHASE-LIKE 12);
1,3-beta-glucan synthase/ transferase, transferring
glycosyl groups AT5G13000 (ATGSL12) mRNA, complete cds
Length = 6194
Score = 65.9 bits (33), Expect = 9e-009
Identities = 63/73 (86%)
Strand = Plus / Minus
Query: 418 gaaattcttcaagtaaatttctcattttcattgcttcctccaagtagttatcctgattca 477
||||||||| ||| ||||| ||||| || | |||||||||| ||| |||||||||||||
Sbjct: 4364 gaaattcttgaagcaaattcctcatctttaacgcttcctccatgtaattatcctgattca 4305
Query: 478 tatcgatcgtctg 490
||||||| |||||
Sbjct: 4304 tatcgattgtctg 4292
>emb|CR356858.1| Arabidopsis thaliana T-DNA flanking sequence GK-704H08-025185,
genomic survey sequence
Length = 275
Score = 61.9 bits (31), Expect = 1e-007
Identities = 91/111 (81%)
Strand = Plus / Plus
Query: 153 gcatatatatcttcgcttatattaatcactcgagacgccttgctaatgccacctcgggtt 212
|||||||||||||| || || ||||| || || || || ||||| || || || || |||
Sbjct: 74 gcatatatatcttcactgatgttaataacacgggatgctttgctgattcctccgcgagtt 133
Query: 213 atgtgaaatatccgatcaaaaacatcaggatgtccatagtgcattcgaact 263
|| |||||||| | ||| || ||||| ||||| ||||||||||||||||||
Sbjct: 134 atatgaaatattctatcgaacacatctggatgcccatagtgcattcgaact 184
>gb|AC006922.7| Arabidopsis thaliana chromosome 2 clone T1J8 map g6825, complete
sequence
Length = 134151
Score = 61.9 bits (31), Expect = 1e-007
Identities = 91/111 (81%)
Strand = Plus / Plus
Query: 153 gcatatatatcttcgcttatattaatcactcgagacgccttgctaatgccacctcgggtt 212
|||||||||||||| || || ||||| || || || || ||||| || || || || |||
Sbjct: 19091 gcatatatatcttcactgatgttaataacacgggatgctttgctgattcctccgcgagtt 19150
Query: 213 atgtgaaatatccgatcaaaaacatcaggatgtccatagtgcattcgaact 263
|| |||||||| | ||| || ||||| ||||| ||||||||||||||||||
Sbjct: 19151 atatgaaatattctatcgaacacatctggatgcccatagtgcattcgaact 19201
Score = 56.0 bits (28), Expect = 8e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 416 atgaaattcttcaagtaaatttctcattttcattgcttcctcca 459
|||||| || ||||||| |||||||||||| |||||||||||||
Sbjct: 19682 atgaaactcctcaagtagatttctcattttgattgcttcctcca 19725
>ref|NM_111596.1| Arabidopsis thaliana ATGSL10 (GLUCAN SYNTHASE-LIKE 10);
1,3-beta-glucan synthase AT3G07160 (ATGSL10) mRNA,
complete cds
Length = 5981
Score = 61.9 bits (31), Expect = 1e-007
Identities = 101/125 (80%)
Strand = Plus / Minus
Query: 465 ttatcctgattcatatcgatcgtctgaactgcatctcctcgagtgaagattatggcatgg 524
||||||||||||||||| || || || | |||| ||| ||||| || | ||||| |||
Sbjct: 3995 ttatcctgattcatatcaatagtttggatagcatttccgcgagtaaacacaatggcgtgg 3936
Query: 525 ttttggttctcaggtntgccttcaccnagcttggggttcccaggcaatttaatgcagtat 584
||||| ||||||||| ||||||| || || || |||| ||||||||| || ||| ||||
Sbjct: 3935 ttttgattctcaggtttgccttcgccaagtttcgggtccccaggcaactttatggagtaa 3876
Query: 585 atttc 589
|||||
Sbjct: 3875 atttc 3871
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 61.9 bits (31), Expect = 1e-007
Identities = 91/111 (81%)
Strand = Plus / Plus
Query: 153 gcatatatatcttcgcttatattaatcactcgagacgccttgctaatgccacctcgggtt 212
|||||||||||||| || || ||||| || || || || ||||| || || || || |||
Sbjct: 15464991 gcatatatatcttcactgatgttaataacacgggatgctttgctgattcctccgcgagtt 15465050
Query: 213 atgtgaaatatccgatcaaaaacatcaggatgtccatagtgcattcgaact 263
|| |||||||| | ||| || ||||| ||||| ||||||||||||||||||
Sbjct: 15465051 atatgaaatattctatcgaacacatctggatgcccatagtgcattcgaact 15465101
Score = 56.0 bits (28), Expect = 8e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 416 atgaaattcttcaagtaaatttctcattttcattgcttcctcca 459
|||||| || ||||||| |||||||||||| |||||||||||||
Sbjct: 15465582 atgaaactcctcaagtagatttctcattttgattgcttcctcca 15465625
>emb|BX824879.1|CNS0A7RK Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH7ZB11 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1717
Score = 60.0 bits (30), Expect = 5e-007
Identities = 81/98 (82%)
Strand = Plus / Minus
Query: 15 agaacttgctcaccattgcctccagcaactttcccctcaaatagtgcaatttggttcaag 74
|||||||| | || ||| || |||||||||||| | |||||||| || ||||| || |
Sbjct: 248 agaacttgtttactattcccaccagcaactttctcttcaaatagagctatttgattgagc 189
Query: 75 ccaacatcacgccctttccccacctggatatattcatg 112
|||||||| |||||||| |||||||| ||||| |||||
Sbjct: 188 ccaacatctcgccctttgcccacctgaatatactcatg 151
>gb|BH253522.1|BH253522 SALK_015030 Arabidopsis thaliana TDNA insertion lines Arabidopsis
thaliana genomic clone SALK_015030, DNA sequence
Length = 467
Score = 58.0 bits (29), Expect = 2e-006
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 474 ttcatatcgatcgtctgaactgcatctcctcgagtgaagattatggcatggttttggttc 533
||||| ||||||||||||| ||| || ||||||||||| | |||||| || ||||| |||
Sbjct: 147 ttcatgtcgatcgtctgaagtgcttcacctcgagtgaaaactatggcgtgattttgattc 206
Query: 534 tcagg 538
|||||
Sbjct: 207 tcagg 211
>dbj|AB023038.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MIE1
Length = 84462
Score = 58.0 bits (29), Expect = 2e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 474 ttcatatcgatcgtctgaactgcatctcctcgagtgaagattatggcatggttttggttc 533
||||| ||||||||||||| ||| || ||||||||||| | |||||| || ||||| |||
Sbjct: 28160 ttcatgtcgatcgtctgaagtgcttcacctcgagtgaaaactatggcgtgattttgattc 28101
Query: 534 tcagg 538
|||||
Sbjct: 28100 tcagg 28096
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 58.0 bits (29), Expect = 2e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 474 ttcatatcgatcgtctgaactgcatctcctcgagtgaagattatggcatggttttggttc 533
||||| ||||||||||||| ||| || ||||||||||| | |||||| || ||||| |||
Sbjct: 4890103 ttcatgtcgatcgtctgaagtgcttcacctcgagtgaaaactatggcgtgattttgattc 4890044
Query: 534 tcagg 538
|||||
Sbjct: 4890043 tcagg 4890039
Score = 54.0 bits (27), Expect = 3e-005
Identities = 97/121 (80%)
Strand = Plus / Minus
Query: 469 cctgattcatatcgatcgtctgaactgcatctcctcgagtgaagattatggcatggtttt 528
||||||||||||| || || || | |||| ||| ||||| || | ||||| |||||||
Sbjct: 2296839 cctgattcatatcaatagtttggatagcatttccgcgagtaaacacaatggcgtggtttt 2296780
Query: 529 ggttctcaggtntgccttcaccnagcttggggttcccaggcaatttaatgcagtatattt 588
| ||||||||| ||||||| || || || |||| ||||||||| || ||| |||| ||||
Sbjct: 2296779 gattctcaggtttgccttcgccaagtttcgggtccccaggcaactttatggagtaaattt 2296720
Query: 589 c 589
|
Sbjct: 2296719 c 2296719
>ref|NM_100528.1| Arabidopsis thaliana ATGSL07 (GLUCAN SYNTHASE-LIKE 7);
1,3-beta-glucan synthase/ transferase, transferring
glycosyl groups AT1G06490 (ATGSL07) mRNA, complete cds
Length = 5802
Score = 58.0 bits (29), Expect = 2e-006
Identities = 76/92 (82%)
Strand = Plus / Minus
Query: 459 aagtagttatcctgattcatatcgatcgtctgaactgcatctcctcgagtgaagattatg 518
|||||||| ||||| ||||| || || ||||| | ||| || || |||||||| || |||
Sbjct: 3986 aagtagttgtcctggttcatgtctatggtctggagtgcttcaccgcgagtgaaaatgatg 3927
Query: 519 gcatggttttggttctcaggtntgccttcacc 550
||||||||||| ||||| ||| | ||||||||
Sbjct: 3926 gcatggttttgattctcgggttttccttcacc 3895
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 58.0 bits (29), Expect = 2e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 474 ttcatatcgatcgtctgaactgcatctcctcgagtgaagattatggcatggttttggttc 533
||||| ||||||||||||| ||| || ||||||||||| | |||||| || ||||| |||
Sbjct: 4900207 ttcatgtcgatcgtctgaagtgcttcacctcgagtgaaaactatggcgtgattttgattc 4900148
Query: 534 tcagg 538
|||||
Sbjct: 4900147 tcagg 4900143
Score = 54.0 bits (27), Expect = 3e-005
Identities = 97/121 (80%)
Strand = Plus / Plus
Query: 469 cctgattcatatcgatcgtctgaactgcatctcctcgagtgaagattatggcatggtttt 528
||||||||||||| || || || | |||| ||| ||||| || | ||||| |||||||
Sbjct: 2269585 cctgattcatatcaatagtttggatagcatttccgcgagtaaacacaatggcgtggtttt 2269644
Query: 529 ggttctcaggtntgccttcaccnagcttggggttcccaggcaatttaatgcagtatattt 588
| ||||||||| ||||||| || || || |||| ||||||||| || ||| |||| ||||
Sbjct: 2269645 gattctcaggtttgccttcgccaagtttcgggtccccaggcaactttatggagtaaattt 2269704
Query: 589 c 589
|
Sbjct: 2269705 c 2269705
>emb|AL938665.1| Arabidopsis thaliana T-DNA flanking sequence GK-236G11-014339,
genomic survey sequence
Length = 395
Score = 54.0 bits (27), Expect = 3e-005
Identities = 77/93 (82%), Gaps = 1/93 (1%)
Strand = Plus / Plus
Query: 464 gttatcctgattcatatcgatcgtctgaactgcatctcctcgagtgaagattatggcatg 523
|||||| |||||||||| || ||||||| ||||||||||| || ||||||| |||||
Sbjct: 23 gttatcttgattcatata-atggtctgaatcgcatctcctcgtgtaaagattagagcatg 81
Query: 524 gttttggttctcaggtntgccttcaccnagctt 556
||||||||| || ||| | || ||||| |||||
Sbjct: 82 gttttggttttctggttttccctcaccaagctt 114
>gb|AC012395.5|ATAC012395 Arabidopsis thaliana chromosome III BAC T1B9 genomic sequence, complete
sequence
Length = 99128
Score = 54.0 bits (27), Expect = 3e-005
Identities = 97/121 (80%)
Strand = Plus / Minus
Query: 469 cctgattcatatcgatcgtctgaactgcatctcctcgagtgaagattatggcatggtttt 528
||||||||||||| || || || | |||| ||| ||||| || | ||||| |||||||
Sbjct: 65204 cctgattcatatcaatagtttggatagcatttccgcgagtaaacacaatggcgtggtttt 65145
Query: 529 ggttctcaggtntgccttcaccnagcttggggttcccaggcaatttaatgcagtatattt 588
| ||||||||| ||||||| || || || |||| ||||||||| || ||| |||| ||||
Sbjct: 65144 gattctcaggtttgccttcgccaagtttcgggtccccaggcaactttatggagtaaattt 65085
Query: 589 c 589
|
Sbjct: 65084 c 65084
>gb|AU237455.1|AU237455 AU237455 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-26-N18 5',
mRNA sequence
Length = 661
Score = 50.1 bits (25), Expect = 5e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 450 gcttcctccaagtagttatcctgattcatatcgatcgtctg 490
|||||||||| |||||| ||||||||||| || ||||||||
Sbjct: 438 gcttcctccatgtagttgtcctgattcatgtctatcgtctg 398
>gb|AF237733.1|AF237733 Arabidopsis thaliana callose synthase 1 catalytic subunit (CalS1)
mRNA, complete cds
Length = 6007
Score = 50.1 bits (25), Expect = 5e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 450 gcttcctccaagtagttatcctgattcatatcgatcgtctg 490
|||||||||| |||||| ||||||||||| || ||||||||
Sbjct: 4049 gcttcctccatgtagttgtcctgattcatgtctatcgtctg 4009
>emb|AX412747.1| Sequence 511 from Patent WO0222675
Length = 5577
Score = 50.1 bits (25), Expect = 5e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 450 gcttcctccaagtagttatcctgattcatatcgatcgtctg 490
|||||||||| |||||| ||||||||||| || ||||||||
Sbjct: 3902 gcttcctccatgtagttgtcctgattcatgtctatcgtctg 3862
>emb|AX508002.1| Sequence 2697 from Patent WO0216655
Length = 5577
Score = 50.1 bits (25), Expect = 5e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 450 gcttcctccaagtagttatcctgattcatatcgatcgtctg 490
|||||||||| |||||| ||||||||||| || ||||||||
Sbjct: 3902 gcttcctccatgtagttgtcctgattcatgtctatcgtctg 3862
>ref|NM_100436.2| Arabidopsis thaliana CALS1 (CALLOSE SYNTHASE 1); transferase,
transferring glycosyl groups AT1G05570 (CALS1) mRNA,
complete cds
Length = 6022
Score = 50.1 bits (25), Expect = 5e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 450 gcttcctccaagtagttatcctgattcatatcgatcgtctg 490
|||||||||| |||||| ||||||||||| || ||||||||
Sbjct: 4049 gcttcctccatgtagttgtcctgattcatgtctatcgtctg 4009
>gb|BZ661216.1|BZ661216 SALK_024682.27.95.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_024682.27.95.x,
DNA sequence
Length = 357
Score = 48.1 bits (24), Expect = 0.002
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 416 atgaaattcttcaagtaaatttctcattttcattgcttcctcca 459
|||||| || || |||| |||||||||||| |||||||||||||
Sbjct: 342 atgaaactcctcgagtagatttctcattttgattgcttcctcca 299
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 48.1 bits (24), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 504 cgagtgaagattatggcatggttttggttctcaggtntgccttcacc 550
|||||||| || |||||||||||||| ||||| ||| | ||||||||
Sbjct: 1986165 cgagtgaaaatgatggcatggttttgattctcgggttttccttcacc 1986119
>gb|AC007592.4|AC007592 Genomic sequence for Arabidopsis thaliana BAC F12K11 from chromosome I,
complete sequence
Length = 93724
Score = 48.1 bits (24), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 504 cgagtgaagattatggcatggttttggttctcaggtntgccttcacc 550
|||||||| || |||||||||||||| ||||| ||| | ||||||||
Sbjct: 67691 cgagtgaaaatgatggcatggttttgattctcgggttttccttcacc 67737
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 48.1 bits (24), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 504 cgagtgaagattatggcatggttttggttctcaggtntgccttcacc 550
|||||||| || |||||||||||||| ||||| ||| | ||||||||
Sbjct: 1986318 cgagtgaaaatgatggcatggttttgattctcgggttttccttcacc 1986272
>emb|AX506240.1| Sequence 935 from Patent WO0216655
Length = 5273
Score = 42.1 bits (21), Expect = 0.12
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1 acacatctcggctgagaacttgctc 25
||||||||||||||||||| |||||
Sbjct: 3921 acacatctcggctgagaacctgctc 3897
>emb|AL161497.2|ATCHRIV9 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 9
Length = 159629
Score = 42.1 bits (21), Expect = 0.12
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1 acacatctcggctgagaacttgctc 25
||||||||||||||||||| |||||
Sbjct: 38560 acacatctcggctgagaacctgctc 38536
>gb|AC005142.2| Arabidopsis thaliana BAC T5L23 from chromosome IV, near 19 cM, complete
sequence
Length = 116448
Score = 42.1 bits (21), Expect = 0.12
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1 acacatctcggctgagaacttgctc 25
||||||||||||||||||| |||||
Sbjct: 17283 acacatctcggctgagaacctgctc 17259
>gb|AY337762.1| Arabidopsis thaliana LAP1 (At2g13680) mRNA, complete cds
Length = 5950
Score = 42.1 bits (21), Expect = 0.12
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 434 atttctcattttcattgcttcctccaagtagttatcctgattcat 478
|||||||||||| | |||||| |||||||| | |||||||||||
Sbjct: 4137 atttctcattttaagtgcttcttccaagtaatggtcctgattcat 4093
>ref|NM_116593.3| Arabidopsis thaliana ATGSL05 (GLUCAN SYNTHASE-LIKE 5);
1,3-beta-glucan synthase/ transferase, transferring
glycosyl groups AT4G03550 (ATGSL05) mRNA, complete cds
Length = 5835
Score = 42.1 bits (21), Expect = 0.12
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1 acacatctcggctgagaacttgctc 25
||||||||||||||||||| |||||
Sbjct: 4156 acacatctcggctgagaacctgctc 4132
>gb|AF071527.1| Arabidopsis thaliana BAC F9H3, from chromosome IV near 18.8 cM,
complete sequence
Length = 95519
Score = 42.1 bits (21), Expect = 0.12
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 acacatctcggctgagaacttgctc 25
||||||||||||||||||| |||||
Sbjct: 14501 acacatctcggctgagaacctgctc 14525
>gb|CL503278.1|CL503278 SAIL_721_D11.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_721_D11.v1, DNA sequence
Length = 989
Score = 40.1 bits (20), Expect = 0.49
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 582 tatatttcttggtctttgccatga 605
||||||||||| ||||||||||||
Sbjct: 558 tatatttcttgctctttgccatga 581
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 297,878
Number of Sequences: 1013581
Number of extensions: 297878
Number of successful extensions: 20358
Number of sequences better than 0.5: 41
Number of HSP's better than 0.5 without gapping: 39
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 19418
Number of HSP's gapped (non-prelim): 944
length of query: 691
length of database: 908,940,872
effective HSP length: 20
effective length of query: 671
effective length of database: 888,669,252
effective search space: 596297068092
effective search space used: 596297068092
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)