BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF25f04.yg.3.3
(1599 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|Y18469.1|ATHY18469 Arabidopsis thaliana mRNA for Export... 151 4e-034
gb|AY056126.1| Arabidopsis thaliana putative exportin1 prot... 151 4e-034
gb|AY096633.1| Arabidopsis thaliana putative Exportin1 (XPO... 151 4e-034
ref|NM_121708.2| Arabidopsis thaliana XPO1A; protein transp... 151 4e-034
gb|AV827312.1|AV827312 AV827312 RAFL9 Arabidopsis thaliana ... 111 4e-022
gb|AF367278.1|AF367278 Arabidopsis thaliana AT3g03110/T17B2... 111 4e-022
emb|AJ277542.1|ATH277542 Arabidopsis thaliana mRNA for expo... 111 4e-022
gb|BT004508.1| Arabidopsis thaliana At3g03110/T17B22_20 gen... 111 4e-022
ref|NM_111181.2| Arabidopsis thaliana XPO1B; protein transp... 111 4e-022
emb|Y18470.1|ATHY18470 Arabidopsis thaliana xpo1 gene 68 5e-009
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 68 5e-009
emb|AL391141.1|ATF2K13 Arabidopsis thaliana DNA chromosome ... 68 5e-009
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 68 5e-009
gb|AC012328.6|ATAC012328 Arabidopsis thaliana chromosome II... 64 8e-008
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 64 8e-008
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 64 8e-008
gb|N38124.1|N38124 19351 Lambda-PRL2 Arabidopsis thaliana c... 58 5e-006
gb|AI996356.1|AI996356 701665066 A. thaliana, Columbia Col-... 48 0.005
gb|AV537981.1|AV537981 AV537981 Arabidopsis thaliana roots ... 48 0.005
emb|BX825750.1|CNS0A7HJ Arabidopsis thaliana Full-length cD... 48 0.005
>emb|Y18469.1|ATHY18469 Arabidopsis thaliana mRNA for Exportin1 (XPO1) protein
Length = 3768
Score = 151 bits (76), Expect = 4e-034
Identities = 322/404 (79%)
Strand = Plus / Plus
Query: 121 attttcttggacatgctaacagtctacagaatgtacagcgagcttgtatcaagcacgatt 180
||||||||||| ||| | | || |||||||||||||| |||||||| |||| || |||
Sbjct: 2241 attttcttggatatgttgaatgtatacagaatgtacagtgagcttgtgtcaaccaacatt 2300
Query: 181 gctgaaggaggaccctttgcctcaaggacgtcatttgtaaaactcttgagatctgtcaag 240
|||| |||||||| | ||| || | ||| || |||||||||||||| ||||| || |||
Sbjct: 2301 actgagggaggaccatatgcttccaagacatcttttgtaaaactcttaagatcggttaag 2360
Query: 241 agggaaaccctaaagttgatcgagacttttgtggacaaggcggaagatttgccacatgta 300
|||||||| || ||| |||| || || ||| | ||||| || ||||| |||||| ||
Sbjct: 2361 agggaaacacttaagctgatagaaacctttttagacaaagctgaagaccagccacacata 2420
Query: 301 ggaaagcagtttgtaccaccaatgatggatcctgttcttggtgattatgctagaaatgta 360
|| || || ||||| || ||||||||||| | || |||||||| ||||| || |||||
Sbjct: 2421 gggaaacaatttgtgccgccaatgatggaatcagtacttggtgactatgcgaggaatgtg 2480
Query: 361 cccgatgcaagggagtctgaagttctgtccttgtttgcaacaatcattaacaagtacaaa 420
|| ||||| ||||| || |||||||| || | |||||||| || || |||||||||||
Sbjct: 2481 cctgatgctagggaatccgaagttctttcactctttgcaacgattataaacaagtacaag 2540
Query: 421 ggggaaatgcttgaggatgtgcctcgtatatttgaggctgttttccagtgcacccttgag 480
| |||| | || || ||||||| |||||||| ||||| |||||||| || | |||
Sbjct: 2541 gcaacaatgttagacgacgtgcctcacatatttgaagctgtattccagtgtacattggag 2600
Query: 481 atgattactaagaactttgaagattatcctgagcaccgcctcaa 524
||||| ||||||||||||||||||||||| || |||||||||||
Sbjct: 2601 atgataactaagaactttgaagattatccagaacaccgcctcaa 2644
Score = 69.9 bits (35), Expect = 1e-009
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 583 tcaagtcagcaattgaagcttgtgatcgattcaattaattgggcgttcagacatacagag 642
||||||| |||| ||||||| ||||| |||||||||| ||||| || |||||||| |||
Sbjct: 2703 tcaagtccgcaactgaagctagtgatggattcaattatctgggcatttagacatactgag 2762
Query: 643 agaaatattgc 653
|||||||||||
Sbjct: 2763 agaaatattgc 2773
Score = 60.0 bits (30), Expect = 1e-006
Identities = 117/146 (80%)
Strand = Plus / Plus
Query: 1042 ttcctggtgcagtcgaaggagttctcagctcaggataacaaggatctatacgcggaagag 1101
||||| || ||||| |||||||| || |||||||||||||| ||||| || || || ||
Sbjct: 3168 ttccttgtacagtctaaggagttttccgctcaggataacaaagatctctatgctgaggaa 3227
Query: 1102 gctgctgcccaaagagaaagggagcgccaacgaatgcttgccattccggggctgattgcc 1161
|| ||||| || ||||| || || || ||| |||||||| | ||||| ||||| |||||
Sbjct: 3228 gcagctgcacagagagagagagaacgtcaaagaatgctttcaattcctgggcttattgct 3287
Query: 1162 cctagcgaattgcaagacgagatggt 1187
|||| || | ||||||||||||||
Sbjct: 3288 cctaatgagattcaagacgagatggt 3313
>gb|AY056126.1| Arabidopsis thaliana putative exportin1 protein XPO1 (At5g17020)
mRNA, complete cds
Length = 3854
Score = 151 bits (76), Expect = 4e-034
Identities = 322/404 (79%)
Strand = Plus / Plus
Query: 121 attttcttggacatgctaacagtctacagaatgtacagcgagcttgtatcaagcacgatt 180
||||||||||| ||| | | || |||||||||||||| |||||||| |||| || |||
Sbjct: 2314 attttcttggatatgttgaatgtatacagaatgtacagtgagcttgtgtcaaccaacatt 2373
Query: 181 gctgaaggaggaccctttgcctcaaggacgtcatttgtaaaactcttgagatctgtcaag 240
|||| |||||||| | ||| || | ||| || |||||||||||||| ||||| || |||
Sbjct: 2374 actgagggaggaccatatgcttccaagacatcttttgtaaaactcttaagatcggttaag 2433
Query: 241 agggaaaccctaaagttgatcgagacttttgtggacaaggcggaagatttgccacatgta 300
|||||||| || ||| |||| || || ||| | ||||| || ||||| |||||| ||
Sbjct: 2434 agggaaacacttaagctgatagaaacctttttagacaaagctgaagaccagccacacata 2493
Query: 301 ggaaagcagtttgtaccaccaatgatggatcctgttcttggtgattatgctagaaatgta 360
|| || || ||||| || ||||||||||| | || |||||||| ||||| || |||||
Sbjct: 2494 gggaaacaatttgtgccgccaatgatggaatcagtacttggtgactatgcgaggaatgtg 2553
Query: 361 cccgatgcaagggagtctgaagttctgtccttgtttgcaacaatcattaacaagtacaaa 420
|| ||||| ||||| || |||||||| || | |||||||| || || |||||||||||
Sbjct: 2554 cctgatgctagggaatccgaagttctttcactctttgcaacgattataaacaagtacaag 2613
Query: 421 ggggaaatgcttgaggatgtgcctcgtatatttgaggctgttttccagtgcacccttgag 480
| |||| | || || ||||||| |||||||| ||||| |||||||| || | |||
Sbjct: 2614 gcaacaatgttagacgacgtgcctcacatatttgaagctgtattccagtgtacattggag 2673
Query: 481 atgattactaagaactttgaagattatcctgagcaccgcctcaa 524
||||| ||||||||||||||||||||||| || |||||||||||
Sbjct: 2674 atgataactaagaactttgaagattatccagaacaccgcctcaa 2717
Score = 69.9 bits (35), Expect = 1e-009
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 583 tcaagtcagcaattgaagcttgtgatcgattcaattaattgggcgttcagacatacagag 642
||||||| |||| ||||||| ||||| |||||||||| ||||| || |||||||| |||
Sbjct: 2776 tcaagtccgcaactgaagctagtgatggattcaattatctgggcatttagacatactgag 2835
Query: 643 agaaatattgc 653
|||||||||||
Sbjct: 2836 agaaatattgc 2846
Score = 60.0 bits (30), Expect = 1e-006
Identities = 117/146 (80%)
Strand = Plus / Plus
Query: 1042 ttcctggtgcagtcgaaggagttctcagctcaggataacaaggatctatacgcggaagag 1101
||||| || ||||| |||||||| || |||||||||||||| ||||| || || || ||
Sbjct: 3241 ttccttgtacagtctaaggagttttccgctcaggataacaaagatctctatgctgaggaa 3300
Query: 1102 gctgctgcccaaagagaaagggagcgccaacgaatgcttgccattccggggctgattgcc 1161
|| ||||| || ||||| || || || ||| |||||||| | ||||| ||||| |||||
Sbjct: 3301 gcagctgcacagagagagagagaacgtcaaagaatgctttcaattcctgggcttattgct 3360
Query: 1162 cctagcgaattgcaagacgagatggt 1187
|||| || | ||||||||||||||
Sbjct: 3361 cctaatgagattcaagacgagatggt 3386
>gb|AY096633.1| Arabidopsis thaliana putative Exportin1 (XPO1) protein (At5g17020)
mRNA, complete cds
Length = 3259
Score = 151 bits (76), Expect = 4e-034
Identities = 322/404 (79%)
Strand = Plus / Plus
Query: 121 attttcttggacatgctaacagtctacagaatgtacagcgagcttgtatcaagcacgatt 180
||||||||||| ||| | | || |||||||||||||| |||||||| |||| || |||
Sbjct: 2146 attttcttggatatgttgaatgtatacagaatgtacagtgagcttgtgtcaaccaacatt 2205
Query: 181 gctgaaggaggaccctttgcctcaaggacgtcatttgtaaaactcttgagatctgtcaag 240
|||| |||||||| | ||| || | ||| || |||||||||||||| ||||| || |||
Sbjct: 2206 actgagggaggaccatatgcttccaagacatcttttgtaaaactcttaagatcggttaag 2265
Query: 241 agggaaaccctaaagttgatcgagacttttgtggacaaggcggaagatttgccacatgta 300
|||||||| || ||| |||| || || ||| | ||||| || ||||| |||||| ||
Sbjct: 2266 agggaaacacttaagctgatagaaacctttttagacaaagctgaagaccagccacacata 2325
Query: 301 ggaaagcagtttgtaccaccaatgatggatcctgttcttggtgattatgctagaaatgta 360
|| || || ||||| || ||||||||||| | || |||||||| ||||| || |||||
Sbjct: 2326 gggaaacaatttgtgccgccaatgatggaatcagtacttggtgactatgcgaggaatgtg 2385
Query: 361 cccgatgcaagggagtctgaagttctgtccttgtttgcaacaatcattaacaagtacaaa 420
|| ||||| ||||| || |||||||| || | |||||||| || || |||||||||||
Sbjct: 2386 cctgatgctagggaatccgaagttctttcactctttgcaacgattataaacaagtacaag 2445
Query: 421 ggggaaatgcttgaggatgtgcctcgtatatttgaggctgttttccagtgcacccttgag 480
| |||| | || || ||||||| |||||||| ||||| |||||||| || | |||
Sbjct: 2446 gcaacaatgttagacgacgtgcctcacatatttgaagctgtattccagtgtacattggag 2505
Query: 481 atgattactaagaactttgaagattatcctgagcaccgcctcaa 524
||||| ||||||||||||||||||||||| || |||||||||||
Sbjct: 2506 atgataactaagaactttgaagattatccagaacaccgcctcaa 2549
Score = 69.9 bits (35), Expect = 1e-009
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 583 tcaagtcagcaattgaagcttgtgatcgattcaattaattgggcgttcagacatacagag 642
||||||| |||| ||||||| ||||| |||||||||| ||||| || |||||||| |||
Sbjct: 2608 tcaagtccgcaactgaagctagtgatggattcaattatctgggcatttagacatactgag 2667
Query: 643 agaaatattgc 653
|||||||||||
Sbjct: 2668 agaaatattgc 2678
Score = 60.0 bits (30), Expect = 1e-006
Identities = 117/146 (80%)
Strand = Plus / Plus
Query: 1042 ttcctggtgcagtcgaaggagttctcagctcaggataacaaggatctatacgcggaagag 1101
||||| || ||||| |||||||| || |||||||||||||| ||||| || || || ||
Sbjct: 3073 ttccttgtacagtctaaggagttttccgctcaggataacaaagatctctatgctgaggaa 3132
Query: 1102 gctgctgcccaaagagaaagggagcgccaacgaatgcttgccattccggggctgattgcc 1161
|| ||||| || ||||| || || || ||| |||||||| | ||||| ||||| |||||
Sbjct: 3133 gcagctgcacagagagagagagaacgtcaaagaatgctttcaattcctgggcttattgct 3192
Query: 1162 cctagcgaattgcaagacgagatggt 1187
|||| || | ||||||||||||||
Sbjct: 3193 cctaatgagattcaagacgagatggt 3218
>ref|NM_121708.2| Arabidopsis thaliana XPO1A; protein transporter AT5G17020 (XPO1A)
mRNA, complete cds
Length = 3884
Score = 151 bits (76), Expect = 4e-034
Identities = 322/404 (79%)
Strand = Plus / Plus
Query: 121 attttcttggacatgctaacagtctacagaatgtacagcgagcttgtatcaagcacgatt 180
||||||||||| ||| | | || |||||||||||||| |||||||| |||| || |||
Sbjct: 2314 attttcttggatatgttgaatgtatacagaatgtacagtgagcttgtgtcaaccaacatt 2373
Query: 181 gctgaaggaggaccctttgcctcaaggacgtcatttgtaaaactcttgagatctgtcaag 240
|||| |||||||| | ||| || | ||| || |||||||||||||| ||||| || |||
Sbjct: 2374 actgagggaggaccatatgcttccaagacatcttttgtaaaactcttaagatcggttaag 2433
Query: 241 agggaaaccctaaagttgatcgagacttttgtggacaaggcggaagatttgccacatgta 300
|||||||| || ||| |||| || || ||| | ||||| || ||||| |||||| ||
Sbjct: 2434 agggaaacacttaagctgatagaaacctttttagacaaagctgaagaccagccacacata 2493
Query: 301 ggaaagcagtttgtaccaccaatgatggatcctgttcttggtgattatgctagaaatgta 360
|| || || ||||| || ||||||||||| | || |||||||| ||||| || |||||
Sbjct: 2494 gggaaacaatttgtgccgccaatgatggaatcagtacttggtgactatgcgaggaatgtg 2553
Query: 361 cccgatgcaagggagtctgaagttctgtccttgtttgcaacaatcattaacaagtacaaa 420
|| ||||| ||||| || |||||||| || | |||||||| || || |||||||||||
Sbjct: 2554 cctgatgctagggaatccgaagttctttcactctttgcaacgattataaacaagtacaag 2613
Query: 421 ggggaaatgcttgaggatgtgcctcgtatatttgaggctgttttccagtgcacccttgag 480
| |||| | || || ||||||| |||||||| ||||| |||||||| || | |||
Sbjct: 2614 gcaacaatgttagacgacgtgcctcacatatttgaagctgtattccagtgtacattggag 2673
Query: 481 atgattactaagaactttgaagattatcctgagcaccgcctcaa 524
||||| ||||||||||||||||||||||| || |||||||||||
Sbjct: 2674 atgataactaagaactttgaagattatccagaacaccgcctcaa 2717
Score = 69.9 bits (35), Expect = 1e-009
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 583 tcaagtcagcaattgaagcttgtgatcgattcaattaattgggcgttcagacatacagag 642
||||||| |||| ||||||| ||||| |||||||||| ||||| || |||||||| |||
Sbjct: 2776 tcaagtccgcaactgaagctagtgatggattcaattatctgggcatttagacatactgag 2835
Query: 643 agaaatattgc 653
|||||||||||
Sbjct: 2836 agaaatattgc 2846
Score = 60.0 bits (30), Expect = 1e-006
Identities = 117/146 (80%)
Strand = Plus / Plus
Query: 1042 ttcctggtgcagtcgaaggagttctcagctcaggataacaaggatctatacgcggaagag 1101
||||| || ||||| |||||||| || |||||||||||||| ||||| || || || ||
Sbjct: 3241 ttccttgtacagtctaaggagttttccgctcaggataacaaagatctctatgctgaggaa 3300
Query: 1102 gctgctgcccaaagagaaagggagcgccaacgaatgcttgccattccggggctgattgcc 1161
|| ||||| || ||||| || || || ||| |||||||| | ||||| ||||| |||||
Sbjct: 3301 gcagctgcacagagagagagagaacgtcaaagaatgctttcaattcctgggcttattgct 3360
Query: 1162 cctagcgaattgcaagacgagatggt 1187
|||| || | ||||||||||||||
Sbjct: 3361 cctaatgagattcaagacgagatggt 3386
>gb|AV827312.1|AV827312 AV827312 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-13-P04 5',
mRNA sequence
Length = 607
Score = 111 bits (56), Expect = 4e-022
Identities = 182/224 (81%)
Strand = Plus / Plus
Query: 301 ggaaagcagtttgtaccaccaatgatggatcctgttcttggtgattatgctagaaatgta 360
||||| |||||||| |||||||||||||||| || ||||| || ||||| ||||||||
Sbjct: 297 ggaaaacagtttgttccaccaatgatggatcaagtacttggcgactatgcaagaaatgtt 356
Query: 361 cccgatgcaagggagtctgaagttctgtccttgtttgcaacaatcattaacaagtacaaa 420
|| |||||||| || || ||||| |||| | ||||| ||||| || ||||| |||||
Sbjct: 357 cctgatgcaagagaatcagaagtcttgtcactctttgcgacaataatcaacaaatacaag 416
Query: 421 ggggaaatgcttgaggatgtgcctcgtatatttgaggctgttttccagtgcacccttgag 480
| | ||||| || || || || | |||||||| ||||||||||||||||| | |||
Sbjct: 417 gttgtaatgcgagatgaagttcccctcatatttgaagctgttttccagtgcacattggag 476
Query: 481 atgattactaagaactttgaagattatcctgagcaccgcctcaa 524
|||||||||||||| ||||||||||| || |||||||| |||||
Sbjct: 477 atgattactaagaattttgaagattacccagagcaccgtctcaa 520
>gb|AF367278.1|AF367278 Arabidopsis thaliana AT3g03110/T17B22_20 mRNA, complete cds
Length = 1415
Score = 111 bits (56), Expect = 4e-022
Identities = 182/224 (81%)
Strand = Plus / Plus
Query: 301 ggaaagcagtttgtaccaccaatgatggatcctgttcttggtgattatgctagaaatgta 360
||||| |||||||| |||||||||||||||| || ||||| || ||||| ||||||||
Sbjct: 299 ggaaaacagtttgttccaccaatgatggatcaagtacttggcgactatgcaagaaatgtt 358
Query: 361 cccgatgcaagggagtctgaagttctgtccttgtttgcaacaatcattaacaagtacaaa 420
|| |||||||| || || ||||| |||| | ||||| ||||| || ||||| |||||
Sbjct: 359 cctgatgcaagagaatcagaagtcttgtcactctttgcgacaataatcaacaaatacaag 418
Query: 421 ggggaaatgcttgaggatgtgcctcgtatatttgaggctgttttccagtgcacccttgag 480
| | ||||| || || || || | |||||||| ||||||||||||||||| | |||
Sbjct: 419 gttgtaatgcgagatgaagttcccctcatatttgaagctgttttccagtgcacattggag 478
Query: 481 atgattactaagaactttgaagattatcctgagcaccgcctcaa 524
|||||||||||||| ||||||||||| || |||||||| |||||
Sbjct: 479 atgattactaagaattttgaagattacccagagcaccgtctcaa 522
Score = 48.1 bits (24), Expect = 0.005
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 1051 cagtcgaaggagttctcagctcaggataacaaggatctatacgcggaagaggctgctgcc 1110
||||| ||||| || || |||||||||||||| ||| |||| || || || |||||||||
Sbjct: 1055 cagtccaaggaattttctgctcaggataacaaagatttatatgctgaggaagctgctgcc 1114
Query: 1111 caaa 1114
||||
Sbjct: 1115 caaa 1118
>emb|AJ277542.1|ATH277542 Arabidopsis thaliana mRNA for exportin 1b (xpo1b gene)
Length = 3261
Score = 111 bits (56), Expect = 4e-022
Identities = 182/224 (81%)
Strand = Plus / Plus
Query: 301 ggaaagcagtttgtaccaccaatgatggatcctgttcttggtgattatgctagaaatgta 360
||||| |||||||| |||||||||||||||| || ||||| || ||||| ||||||||
Sbjct: 2359 ggaaaacagtttgttccaccaatgatggatcaagtacttggcgactatgcaagaaatgtt 2418
Query: 361 cccgatgcaagggagtctgaagttctgtccttgtttgcaacaatcattaacaagtacaaa 420
|| |||||||| || || ||||| |||| | ||||| ||||| || ||||| |||||
Sbjct: 2419 cctgatgcaagagaatcagaagtcttgtcactctttgcgacaataatcaacaaatacaag 2478
Query: 421 ggggaaatgcttgaggatgtgcctcgtatatttgaggctgttttccagtgcacccttgag 480
| | ||||| || || || || | |||||||| ||||||||||||||||| | |||
Sbjct: 2479 gttgtaatgcgagatgaagttcccctcatatttgaagctgttttccagtgcacattggag 2538
Query: 481 atgattactaagaactttgaagattatcctgagcaccgcctcaa 524
|||||||||||||| ||||||||||| || |||||||| |||||
Sbjct: 2539 atgattactaagaattttgaagattacccagagcaccgtctcaa 2582
Score = 48.1 bits (24), Expect = 0.005
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 1051 cagtcgaaggagttctcagctcaggataacaaggatctatacgcggaagaggctgctgcc 1110
||||| ||||| || || |||||||||||||| ||| |||| || || || |||||||||
Sbjct: 3115 cagtccaaggaattttctgctcaggataacaaagatttatatgctgaggaagctgctgcc 3174
Query: 1111 caaa 1114
||||
Sbjct: 3175 caaa 3178
>gb|BT004508.1| Arabidopsis thaliana At3g03110/T17B22_20 gene, complete cds
Length = 1071
Score = 111 bits (56), Expect = 4e-022
Identities = 182/224 (81%)
Strand = Plus / Plus
Query: 301 ggaaagcagtttgtaccaccaatgatggatcctgttcttggtgattatgctagaaatgta 360
||||| |||||||| |||||||||||||||| || ||||| || ||||| ||||||||
Sbjct: 169 ggaaaacagtttgttccaccaatgatggatcaagtacttggcgactatgcaagaaatgtt 228
Query: 361 cccgatgcaagggagtctgaagttctgtccttgtttgcaacaatcattaacaagtacaaa 420
|| |||||||| || || ||||| |||| | ||||| ||||| || ||||| |||||
Sbjct: 229 cctgatgcaagagaatcagaagtcttgtcactctttgcgacaataatcaacaaatacaag 288
Query: 421 ggggaaatgcttgaggatgtgcctcgtatatttgaggctgttttccagtgcacccttgag 480
| | ||||| || || || || | |||||||| ||||||||||||||||| | |||
Sbjct: 289 gttgtaatgcgagatgaagttcccctcatatttgaagctgttttccagtgcacattggag 348
Query: 481 atgattactaagaactttgaagattatcctgagcaccgcctcaa 524
|||||||||||||| ||||||||||| || |||||||| |||||
Sbjct: 349 atgattactaagaattttgaagattacccagagcaccgtctcaa 392
Score = 48.1 bits (24), Expect = 0.005
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 1051 cagtcgaaggagttctcagctcaggataacaaggatctatacgcggaagaggctgctgcc 1110
||||| ||||| || || |||||||||||||| ||| |||| || || || |||||||||
Sbjct: 925 cagtccaaggaattttctgctcaggataacaaagatttatatgctgaggaagctgctgcc 984
Query: 1111 caaa 1114
||||
Sbjct: 985 caaa 988
>ref|NM_111181.2| Arabidopsis thaliana XPO1B; protein transporter AT3G03110 (XPO1B)
mRNA, complete cds
Length = 3475
Score = 111 bits (56), Expect = 4e-022
Identities = 182/224 (81%)
Strand = Plus / Plus
Query: 301 ggaaagcagtttgtaccaccaatgatggatcctgttcttggtgattatgctagaaatgta 360
||||| |||||||| |||||||||||||||| || ||||| || ||||| ||||||||
Sbjct: 2359 ggaaaacagtttgttccaccaatgatggatcaagtacttggcgactatgcaagaaatgtt 2418
Query: 361 cccgatgcaagggagtctgaagttctgtccttgtttgcaacaatcattaacaagtacaaa 420
|| |||||||| || || ||||| |||| | ||||| ||||| || ||||| |||||
Sbjct: 2419 cctgatgcaagagaatcagaagtcttgtcactctttgcgacaataatcaacaaatacaag 2478
Query: 421 ggggaaatgcttgaggatgtgcctcgtatatttgaggctgttttccagtgcacccttgag 480
| | ||||| || || || || | |||||||| ||||||||||||||||| | |||
Sbjct: 2479 gttgtaatgcgagatgaagttcccctcatatttgaagctgttttccagtgcacattggag 2538
Query: 481 atgattactaagaactttgaagattatcctgagcaccgcctcaa 524
|||||||||||||| ||||||||||| || |||||||| |||||
Sbjct: 2539 atgattactaagaattttgaagattacccagagcaccgtctcaa 2582
Score = 48.1 bits (24), Expect = 0.005
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 1051 cagtcgaaggagttctcagctcaggataacaaggatctatacgcggaagaggctgctgcc 1110
||||| ||||| || || |||||||||||||| ||| |||| || || || |||||||||
Sbjct: 3115 cagtccaaggaattttctgctcaggataacaaagatttatatgctgaggaagctgctgcc 3174
Query: 1111 caaa 1114
||||
Sbjct: 3175 caaa 3178
>emb|Y18470.1|ATHY18470 Arabidopsis thaliana xpo1 gene
Length = 8144
Score = 67.9 bits (34), Expect = 5e-009
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 479 agatgattactaagaactttgaagattatcctgagcaccgcctcaa 524
||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct: 6888 agatgataactaagaactttgaagattatccagaacaccgcctcaa 6933
Score = 65.9 bits (33), Expect = 2e-008
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 589 cagcaattgaagcttgtgatcgattcaattaattgggcgttcagacatacagagagaaat 648
|||||| ||||||| ||||| |||||||||| ||||| || |||||||| |||||||||
Sbjct: 7120 cagcaactgaagctagtgatggattcaattatctgggcatttagacatactgagagaaat 7179
Query: 649 attgc 653
|||||
Sbjct: 7180 attgc 7184
Score = 50.1 bits (25), Expect = 0.001
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 147 cagaatgtacagcgagcttgtatcaagcacgattgctgaaggaggaccctttgcctcaag 206
|||||||||||| |||||||| |||| || ||| |||| |||||||| | ||| || |
Sbjct: 6238 cagaatgtacagtgagcttgtgtcaaccaacattactgagggaggaccatatgcttccaa 6297
Query: 207 gacgtcatttgtaaaactctt 227
||| || ||||||||||||||
Sbjct: 6298 gacatcttttgtaaaactctt 6318
Score = 48.1 bits (24), Expect = 0.005
Identities = 147/188 (78%)
Strand = Plus / Plus
Query: 229 agatctgtcaagagggaaaccctaaagttgatcgagacttttgtggacaaggcggaagat 288
||||| || ||||||||||| || ||| |||| || || ||| | ||||| || |||||
Sbjct: 6412 agatcggttaagagggaaacacttaagctgatagaaacctttttagacaaagctgaagac 6471
Query: 289 ttgccacatgtaggaaagcagtttgtaccaccaatgatggatcctgttcttggtgattat 348
|||||| |||| || || ||||| || ||||||||||| | || |||||||| |||
Sbjct: 6472 cagccacacatagggaaacaatttgtgccgccaatgatggaatcagtacttggtgactat 6531
Query: 349 gctagaaatgtacccgatgcaagggagtctgaagttctgtccttgtttgcaacaatcatt 408
|| || ||||| || ||||| ||||| || |||||||| || | |||||||| || ||
Sbjct: 6532 gcgaggaatgtgcctgatgctagggaatccgaagttctttcactctttgcaacgattata 6591
Query: 409 aacaagta 416
||||||||
Sbjct: 6592 aacaagta 6599
Score = 42.1 bits (21), Expect = 0.29
Identities = 93/117 (79%)
Strand = Plus / Plus
Query: 1071 tcaggataacaaggatctatacgcggaagaggctgctgcccaaagagaaagggagcgcca 1130
|||||||||||| ||||| || || || || || ||||| || ||||| || || || ||
Sbjct: 7989 tcaggataacaaagatctctatgctgaggaagcagctgcacagagagagagagaacgtca 8048
Query: 1131 acgaatgcttgccattccggggctgattgcccctagcgaattgcaagacgagatggt 1187
| |||||||| | ||||| ||||| ||||| |||| || | ||||||||||||||
Sbjct: 8049 aagaatgctttcaattcctgggcttattgctcctaatgagattcaagacgagatggt 8105
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 67.9 bits (34), Expect = 5e-009
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 479 agatgattactaagaactttgaagattatcctgagcaccgcctcaa 524
||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct: 5364215 agatgataactaagaactttgaagattatccagaacaccgcctcaa 5364260
Score = 65.9 bits (33), Expect = 2e-008
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 589 cagcaattgaagcttgtgatcgattcaattaattgggcgttcagacatacagagagaaat 648
|||||| ||||||| ||||| |||||||||| ||||| || |||||||| |||||||||
Sbjct: 5364447 cagcaactgaagctagtgatggattcaattatctgggcatttagacatactgagagaaat 5364506
Query: 649 attgc 653
|||||
Sbjct: 5364507 attgc 5364511
Score = 50.1 bits (25), Expect = 0.001
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 147 cagaatgtacagcgagcttgtatcaagcacgattgctgaaggaggaccctttgcctcaag 206
|||||||||||| |||||||| |||| || ||| |||| |||||||| | ||| || |
Sbjct: 5363565 cagaatgtacagtgagcttgtgtcaaccaacattactgagggaggaccatatgcttccaa 5363624
Query: 207 gacgtcatttgtaaaactctt 227
||| || ||||||||||||||
Sbjct: 5363625 gacatcttttgtaaaactctt 5363645
Score = 48.1 bits (24), Expect = 0.005
Identities = 147/188 (78%)
Strand = Plus / Plus
Query: 229 agatctgtcaagagggaaaccctaaagttgatcgagacttttgtggacaaggcggaagat 288
||||| || ||||||||||| || ||| |||| || || ||| | ||||| || |||||
Sbjct: 5363739 agatcggttaagagggaaacacttaagctgatagaaacctttttagacaaagctgaagac 5363798
Query: 289 ttgccacatgtaggaaagcagtttgtaccaccaatgatggatcctgttcttggtgattat 348
|||||| |||| || || ||||| || ||||||||||| | || |||||||| |||
Sbjct: 5363799 cagccacacatagggaaacaatttgtgccgccaatgatggaatcagtacttggtgactat 5363858
Query: 349 gctagaaatgtacccgatgcaagggagtctgaagttctgtccttgtttgcaacaatcatt 408
|| || ||||| || ||||| ||||| || |||||||| || | |||||||| || ||
Sbjct: 5363859 gcgaggaatgtgcctgatgctagggaatccgaagttctttcactctttgcaacgattata 5363918
Query: 409 aacaagta 416
||||||||
Sbjct: 5363919 aacaagta 5363926
Score = 42.1 bits (21), Expect = 0.29
Identities = 93/117 (79%)
Strand = Plus / Plus
Query: 1071 tcaggataacaaggatctatacgcggaagaggctgctgcccaaagagaaagggagcgcca 1130
|||||||||||| ||||| || || || || || ||||| || ||||| || || || ||
Sbjct: 5365317 tcaggataacaaagatctctatgctgaggaagcagctgcacagagagagagagaacgtca 5365376
Query: 1131 acgaatgcttgccattccggggctgattgcccctagcgaattgcaagacgagatggt 1187
| |||||||| | ||||| ||||| ||||| |||| || | ||||||||||||||
Sbjct: 5365377 aagaatgctttcaattcctgggcttattgctcctaatgagattcaagacgagatggt 5365433
>emb|AL391141.1|ATF2K13 Arabidopsis thaliana DNA chromosome 5, BAC clone F2K13 (ESSA project)
Length = 98101
Score = 67.9 bits (34), Expect = 5e-009
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 479 agatgattactaagaactttgaagattatcctgagcaccgcctcaa 524
||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct: 58333 agatgataactaagaactttgaagattatccagaacaccgcctcaa 58378
Score = 65.9 bits (33), Expect = 2e-008
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 589 cagcaattgaagcttgtgatcgattcaattaattgggcgttcagacatacagagagaaat 648
|||||| ||||||| ||||| |||||||||| ||||| || |||||||| |||||||||
Sbjct: 58565 cagcaactgaagctagtgatggattcaattatctgggcatttagacatactgagagaaat 58624
Query: 649 attgc 653
|||||
Sbjct: 58625 attgc 58629
Score = 50.1 bits (25), Expect = 0.001
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 147 cagaatgtacagcgagcttgtatcaagcacgattgctgaaggaggaccctttgcctcaag 206
|||||||||||| |||||||| |||| || ||| |||| |||||||| | ||| || |
Sbjct: 57683 cagaatgtacagtgagcttgtgtcaaccaacattactgagggaggaccatatgcttccaa 57742
Query: 207 gacgtcatttgtaaaactctt 227
||| || ||||||||||||||
Sbjct: 57743 gacatcttttgtaaaactctt 57763
Score = 48.1 bits (24), Expect = 0.005
Identities = 147/188 (78%)
Strand = Plus / Plus
Query: 229 agatctgtcaagagggaaaccctaaagttgatcgagacttttgtggacaaggcggaagat 288
||||| || ||||||||||| || ||| |||| || || ||| | ||||| || |||||
Sbjct: 57857 agatcggttaagagggaaacacttaagctgatagaaacctttttagacaaagctgaagac 57916
Query: 289 ttgccacatgtaggaaagcagtttgtaccaccaatgatggatcctgttcttggtgattat 348
|||||| |||| || || ||||| || ||||||||||| | || |||||||| |||
Sbjct: 57917 cagccacacatagggaaacaatttgtgccgccaatgatggaatcagtacttggtgactat 57976
Query: 349 gctagaaatgtacccgatgcaagggagtctgaagttctgtccttgtttgcaacaatcatt 408
|| || ||||| || ||||| ||||| || |||||||| || | |||||||| || ||
Sbjct: 57977 gcgaggaatgtgcctgatgctagggaatccgaagttctttcactctttgcaacgattata 58036
Query: 409 aacaagta 416
||||||||
Sbjct: 58037 aacaagta 58044
Score = 42.1 bits (21), Expect = 0.29
Identities = 93/117 (79%)
Strand = Plus / Plus
Query: 1071 tcaggataacaaggatctatacgcggaagaggctgctgcccaaagagaaagggagcgcca 1130
|||||||||||| ||||| || || || || || ||||| || ||||| || || || ||
Sbjct: 59435 tcaggataacaaagatctctatgctgaggaagcagctgcacagagagagagagaacgtca 59494
Query: 1131 acgaatgcttgccattccggggctgattgcccctagcgaattgcaagacgagatggt 1187
| |||||||| | ||||| ||||| ||||| |||| || | ||||||||||||||
Sbjct: 59495 aagaatgctttcaattcctgggcttattgctcctaatgagattcaagacgagatggt 59551
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 67.9 bits (34), Expect = 5e-009
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 479 agatgattactaagaactttgaagattatcctgagcaccgcctcaa 524
||||||| ||||||||||||||||||||||| || |||||||||||
Sbjct: 5601242 agatgataactaagaactttgaagattatccagaacaccgcctcaa 5601287
Score = 65.9 bits (33), Expect = 2e-008
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 589 cagcaattgaagcttgtgatcgattcaattaattgggcgttcagacatacagagagaaat 648
|||||| ||||||| ||||| |||||||||| ||||| || |||||||| |||||||||
Sbjct: 5601474 cagcaactgaagctagtgatggattcaattatctgggcatttagacatactgagagaaat 5601533
Query: 649 attgc 653
|||||
Sbjct: 5601534 attgc 5601538
Score = 50.1 bits (25), Expect = 0.001
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 147 cagaatgtacagcgagcttgtatcaagcacgattgctgaaggaggaccctttgcctcaag 206
|||||||||||| |||||||| |||| || ||| |||| |||||||| | ||| || |
Sbjct: 5600592 cagaatgtacagtgagcttgtgtcaaccaacattactgagggaggaccatatgcttccaa 5600651
Query: 207 gacgtcatttgtaaaactctt 227
||| || ||||||||||||||
Sbjct: 5600652 gacatcttttgtaaaactctt 5600672
Score = 48.1 bits (24), Expect = 0.005
Identities = 147/188 (78%)
Strand = Plus / Plus
Query: 229 agatctgtcaagagggaaaccctaaagttgatcgagacttttgtggacaaggcggaagat 288
||||| || ||||||||||| || ||| |||| || || ||| | ||||| || |||||
Sbjct: 5600766 agatcggttaagagggaaacacttaagctgatagaaacctttttagacaaagctgaagac 5600825
Query: 289 ttgccacatgtaggaaagcagtttgtaccaccaatgatggatcctgttcttggtgattat 348
|||||| |||| || || ||||| || ||||||||||| | || |||||||| |||
Sbjct: 5600826 cagccacacatagggaaacaatttgtgccgccaatgatggaatcagtacttggtgactat 5600885
Query: 349 gctagaaatgtacccgatgcaagggagtctgaagttctgtccttgtttgcaacaatcatt 408
|| || ||||| || ||||| ||||| || |||||||| || | |||||||| || ||
Sbjct: 5600886 gcgaggaatgtgcctgatgctagggaatccgaagttctttcactctttgcaacgattata 5600945
Query: 409 aacaagta 416
||||||||
Sbjct: 5600946 aacaagta 5600953
Score = 42.1 bits (21), Expect = 0.29
Identities = 93/117 (79%)
Strand = Plus / Plus
Query: 1071 tcaggataacaaggatctatacgcggaagaggctgctgcccaaagagaaagggagcgcca 1130
|||||||||||| ||||| || || || || || ||||| || ||||| || || || ||
Sbjct: 5602344 tcaggataacaaagatctctatgctgaggaagcagctgcacagagagagagagaacgtca 5602403
Query: 1131 acgaatgcttgccattccggggctgattgcccctagcgaattgcaagacgagatggt 1187
| |||||||| | ||||| ||||| ||||| |||| || | ||||||||||||||
Sbjct: 5602404 aagaatgctttcaattcctgggcttattgctcctaatgagattcaagacgagatggt 5602460
>gb|AC012328.6|ATAC012328 Arabidopsis thaliana chromosome III BAC T17B22 genomic sequence,
complete sequence
Length = 96540
Score = 63.9 bits (32), Expect = 8e-008
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 301 ggaaagcagtttgtaccaccaatgatggatcctgttcttggtgattatgctagaaatgta 360
||||| |||||||| |||||||||||||||| || ||||| || ||||| ||||||||
Sbjct: 65623 ggaaaacagtttgttccaccaatgatggatcaagtacttggcgactatgcaagaaatgtt 65564
Query: 361 cccgatgcaagggagtctgaagttctgtccttgtttgcaacaatcattaacaagta 416
|| |||||||| || || ||||| |||| | ||||| ||||| || ||||||||
Sbjct: 65563 cctgatgcaagagaatcagaagtcttgtcactctttgcgacaataatcaacaagta 65508
Score = 60.0 bits (30), Expect = 1e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 479 agatgattactaagaactttgaagattatcctgagcaccgcctcaa 524
|||||||||||||||| ||||||||||| || |||||||| |||||
Sbjct: 65072 agatgattactaagaattttgaagattacccagagcaccgtctcaa 65027
Score = 44.1 bits (22), Expect = 0.074
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 448 atatttgaggctgttttccagtgcac 473
|||||||| |||||||||||||||||
Sbjct: 65266 atatttgaagctgttttccagtgcac 65241
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 63.9 bits (32), Expect = 8e-008
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 301 ggaaagcagtttgtaccaccaatgatggatcctgttcttggtgattatgctagaaatgta 360
||||| |||||||| |||||||||||||||| || ||||| || ||||| ||||||||
Sbjct: 749848 ggaaaacagtttgttccaccaatgatggatcaagtacttggcgactatgcaagaaatgtt 749789
Query: 361 cccgatgcaagggagtctgaagttctgtccttgtttgcaacaatcattaacaagta 416
|| |||||||| || || ||||| |||| | ||||| ||||| || ||||||||
Sbjct: 749788 cctgatgcaagagaatcagaagtcttgtcactctttgcgacaataatcaacaagta 749733
Score = 60.0 bits (30), Expect = 1e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 479 agatgattactaagaactttgaagattatcctgagcaccgcctcaa 524
|||||||||||||||| ||||||||||| || |||||||| |||||
Sbjct: 749297 agatgattactaagaattttgaagattacccagagcaccgtctcaa 749252
Score = 44.1 bits (22), Expect = 0.074
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 448 atatttgaggctgttttccagtgcac 473
|||||||| |||||||||||||||||
Sbjct: 749491 atatttgaagctgttttccagtgcac 749466
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 63.9 bits (32), Expect = 8e-008
Identities = 95/116 (81%)
Strand = Plus / Plus
Query: 301 ggaaagcagtttgtaccaccaatgatggatcctgttcttggtgattatgctagaaatgta 360
||||| |||||||| |||||||||||||||| || ||||| || ||||| ||||||||
Sbjct: 715140 ggaaaacagtttgttccaccaatgatggatcaagtacttggcgactatgcaagaaatgtt 715199
Query: 361 cccgatgcaagggagtctgaagttctgtccttgtttgcaacaatcattaacaagta 416
|| |||||||| || || ||||| |||| | ||||| ||||| || ||||||||
Sbjct: 715200 cctgatgcaagagaatcagaagtcttgtcactctttgcgacaataatcaacaagta 715255
Score = 60.0 bits (30), Expect = 1e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 479 agatgattactaagaactttgaagattatcctgagcaccgcctcaa 524
|||||||||||||||| ||||||||||| || |||||||| |||||
Sbjct: 715691 agatgattactaagaattttgaagattacccagagcaccgtctcaa 715736
Score = 44.1 bits (22), Expect = 0.074
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 448 atatttgaggctgttttccagtgcac 473
|||||||| |||||||||||||||||
Sbjct: 715497 atatttgaagctgttttccagtgcac 715522
>gb|N38124.1|N38124 19351 Lambda-PRL2 Arabidopsis thaliana cDNA clone 219H5T7, mRNA
sequence
Length = 403
Score = 58.0 bits (29), Expect = 5e-006
Identities = 74/89 (83%)
Strand = Plus / Plus
Query: 145 tacagaatgtacagcgagcttgtatcaagcacgattgctgaaggaggaccctttgcctca 204
|||||||||||||| |||||||| |||| || ||| |||| |||||||| | ||| ||
Sbjct: 127 tacagaatgtacagtgagcttgtgtcaaccaacattactgagggaggaccatatgcttcc 186
Query: 205 aggacgtcatttgtaaaactcttgagatc 233
| ||| || |||||||||||||| |||||
Sbjct: 187 aagacatcttttgtaaaactcttaagatc 215
>gb|AI996356.1|AI996356 701665066 A. thaliana, Columbia Col-0, root-1 Arabidopsis thaliana
cDNA clone 701665066, mRNA sequence
Length = 599
Score = 48.1 bits (24), Expect = 0.005
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 1051 cagtcgaaggagttctcagctcaggataacaaggatctatacgcggaagaggctgctgcc 1110
||||| ||||| || || |||||||||||||| ||| |||| || || || |||||||||
Sbjct: 304 cagtccaaggaattttctgctcaggataacaaagatttatatgctgaggaagctgctgcc 245
Query: 1111 caaa 1114
||||
Sbjct: 244 caaa 241
>gb|AV537981.1|AV537981 AV537981 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ108e09F 3', mRNA sequence
Length = 449
Score = 48.1 bits (24), Expect = 0.005
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 1051 cagtcgaaggagttctcagctcaggataacaaggatctatacgcggaagaggctgctgcc 1110
||||| ||||| || || |||||||||||||| ||| |||| || || || |||||||||
Sbjct: 280 cagtccaaggaattttctgctcaggataacaaagatttatatgctgaggaagctgctgcc 221
Query: 1111 caaa 1114
||||
Sbjct: 220 caaa 217
>emb|BX825750.1|CNS0A7HJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL5ZG06 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 620
Score = 48.1 bits (24), Expect = 0.005
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 1051 cagtcgaaggagttctcagctcaggataacaaggatctatacgcggaagaggctgctgcc 1110
||||| ||||| || || |||||||||||||| ||| |||| || || || |||||||||
Sbjct: 301 cagtccaaggaattttctgctcaggataacaaagatttatatgctgaggaagctgctgcc 360
Query: 1111 caaa 1114
||||
Sbjct: 361 caaa 364
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 856,620
Number of Sequences: 1013581
Number of extensions: 856620
Number of successful extensions: 64164
Number of sequences better than 0.5: 20
Number of HSP's better than 0.5 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62582
Number of HSP's gapped (non-prelim): 1574
length of query: 1599
length of database: 908,940,872
effective HSP length: 21
effective length of query: 1578
effective length of database: 887,655,671
effective search space: 1400720648838
effective search space used: 1400720648838
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)