BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QAF1g01.yg.2.1
         (335 letters)

Database: At_nucl_with_EST.fasta 
           1,013,581 sequences; 908,940,872 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|BX824879.1|CNS0A7RK  Arabidopsis thaliana Full-length cD...    60   3e-007
emb|AX506240.1|  Sequence 935 from Patent WO0216655                42   0.059
emb|AJ270058.1|  Arabidopsis thaliana DNA chromosome 4, shor...    42   0.059
emb|AL161497.2|ATCHRIV9  Arabidopsis thaliana DNA chromosome...    42   0.059
gb|AC005142.2|  Arabidopsis thaliana BAC T5L23 from chromoso...    42   0.059
ref|NM_116593.3|  Arabidopsis thaliana ATGSL05 (GLUCAN SYNTH...    42   0.059
gb|AF071527.1|  Arabidopsis thaliana BAC F9H3, from chromoso...    42   0.059
ref|NC_003075.3|  Arabidopsis thaliana chromosome 4, complet...    42   0.059

>emb|BX824879.1|CNS0A7RK Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH7ZB11 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1717

 Score = 60.0 bits (30), Expect = 3e-007
 Identities = 81/98 (82%)
 Strand = Plus / Minus

                                                                       
Query: 15  agaacttgctcaccattgcctccagcaactttcccctcaaatagtgcaatttggttcaag 74
           |||||||| | || ||| || |||||||||||| | |||||||| || ||||| || |  
Sbjct: 248 agaacttgtttactattcccaccagcaactttctcttcaaatagagctatttgattgagc 189

                                                 
Query: 75  ccaacatcacgccctttccccacctggatatattcatg 112
           |||||||| |||||||| |||||||| ||||| |||||
Sbjct: 188 ccaacatctcgccctttgcccacctgaatatactcatg 151



>emb|AX506240.1| Sequence 935 from Patent WO0216655
          Length = 5273

 Score = 42.1 bits (21), Expect = 0.059
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 1    acacatctcggctgagaacttgctc 25
            ||||||||||||||||||| |||||
Sbjct: 3921 acacatctcggctgagaacctgctc 3897



>emb|AJ270058.1| Arabidopsis thaliana DNA chromosome 4, short arm
          Length = 3052119

 Score = 42.1 bits (21), Expect = 0.059
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 1       acacatctcggctgagaacttgctc 25
               ||||||||||||||||||| |||||
Sbjct: 1576656 acacatctcggctgagaacctgctc 1576632



>emb|AL161497.2|ATCHRIV9 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 9
          Length = 159629

 Score = 42.1 bits (21), Expect = 0.059
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 1     acacatctcggctgagaacttgctc 25
             ||||||||||||||||||| |||||
Sbjct: 38560 acacatctcggctgagaacctgctc 38536



>gb|AC005142.2| Arabidopsis thaliana BAC T5L23 from chromosome IV, near 19 cM, complete
             sequence
          Length = 116448

 Score = 42.1 bits (21), Expect = 0.059
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 1     acacatctcggctgagaacttgctc 25
             ||||||||||||||||||| |||||
Sbjct: 17283 acacatctcggctgagaacctgctc 17259



>ref|NM_116593.3| Arabidopsis thaliana ATGSL05 (GLUCAN SYNTHASE-LIKE 5);
            1,3-beta-glucan synthase/ transferase, transferring
            glycosyl groups AT4G03550 (ATGSL05) mRNA, complete cds
          Length = 5835

 Score = 42.1 bits (21), Expect = 0.059
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 1    acacatctcggctgagaacttgctc 25
            ||||||||||||||||||| |||||
Sbjct: 4156 acacatctcggctgagaacctgctc 4132



>gb|AF071527.1| Arabidopsis thaliana BAC F9H3, from chromosome IV near 18.8 cM,
             complete sequence
          Length = 95519

 Score = 42.1 bits (21), Expect = 0.059
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 1     acacatctcggctgagaacttgctc 25
             ||||||||||||||||||| |||||
Sbjct: 14501 acacatctcggctgagaacctgctc 14525



>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
          Length = 18585042

 Score = 42.1 bits (21), Expect = 0.059
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 1       acacatctcggctgagaacttgctc 25
               ||||||||||||||||||| |||||
Sbjct: 1577841 acacatctcggctgagaacctgctc 1577817



  Database: At_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:09 PM
  Number of letters in database: 908,940,872
  Number of sequences in database:  1,013,581
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 95,068
Number of Sequences: 1013581
Number of extensions: 95068
Number of successful extensions: 5791
Number of sequences better than  0.5: 8
Number of HSP's better than  0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5726
Number of HSP's gapped (non-prelim): 65
length of query: 335
length of database: 908,940,872
effective HSP length: 19
effective length of query: 316
effective length of database: 889,682,833
effective search space: 281139775228
effective search space used: 281139775228
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)