BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAF13b04.yg.2.1
(370 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_179940.1| Arabidopsis thaliana ATGSL08 (GLUCAN SYNTH... 64 2e-008
gb|CB185570.1|CB185570 EST000103 Arabidopsis Salicylic Acid... 52 7e-005
emb|BX661189.1| Arabidopsis thaliana T-DNA flanking sequenc... 48 0.001
emb|BX663297.1| Arabidopsis thaliana T-DNA flanking sequenc... 48 0.001
emb|BX662798.1| Arabidopsis thaliana T-DNA flanking sequenc... 46 0.004
gb|CB185577.1|CB185577 EST000110 Arabidopsis Salicylic Acid... 46 0.004
gb|CB185485.1|CB185485 EST00018 Arabidopsis Salicylic Acid ... 46 0.004
gb|CB185533.1|CB185533 EST00066 Arabidopsis Salicylic Acid ... 46 0.004
gb|CB185851.1|CB185851 EST01042 Arabidopsis virulent Pseudo... 46 0.004
gb|BE845139.1|BE845139 AD07D05T7 AD A. thaliana (Col-0 gl1)... 44 0.017
gb|BE662730.1|BE662730 EST00251 Arabidopsis Acute Ozone Rev... 44 0.017
gb|BE662731.1|BE662731 EST00252 Arabidopsis Acute Ozone Rev... 44 0.017
gb|CB185474.1|CB185474 EST00007 Arabidopsis Salicylic Acid ... 44 0.017
gb|CB185495.1|CB185495 EST00028 Arabidopsis Salicylic Acid ... 44 0.017
gb|CB185508.1|CB185508 EST00041 Arabidopsis Salicylic Acid ... 44 0.017
gb|CB074186.1|CB074186 EST02508 Early Ovule Development For... 44 0.017
emb|BX663278.1| Arabidopsis thaliana T-DNA flanking sequenc... 42 0.065
gb|BE845176.1|BE845176 AD08A02T7 AD A. thaliana (Col-0 gl1)... 42 0.065
gb|BE662936.1|BE662936 EST00086 Arabidopsis Acute Ozone For... 42 0.065
gb|CB185611.1|CB185611 EST00536 Arabidopsis avirulent Pseud... 42 0.065
gb|CB185622.1|CB185622 EST00547 Arabidopsis avirulent Pseud... 42 0.065
gb|CB185497.1|CB185497 EST00030 Arabidopsis Salicylic Acid ... 42 0.065
gb|CB185498.1|CB185498 EST00031 Arabidopsis Salicylic Acid ... 42 0.065
gb|CB185499.1|CB185499 EST00032 Arabidopsis Salicylic Acid ... 42 0.065
gb|CB185509.1|CB185509 EST00042 Arabidopsis Salicylic Acid ... 42 0.065
gb|CB185511.1|CB185511 EST00044 Arabidopsis Salicylic Acid ... 42 0.065
gb|CB185512.1|CB185512 EST00045 Arabidopsis Salicylic Acid ... 42 0.065
gb|CB185532.1|CB185532 EST00065 Arabidopsis Salicylic Acid ... 42 0.065
gb|CB185943.1|CB185943 EST01134 Arabidopsis virulent Pseudo... 42 0.065
gb|CB074227.1|CB074227 EST01003 Virulent Peronospora parasi... 42 0.065
gb|CB074279.1|CB074279 EST00792 Virulent Peronospora parasi... 42 0.065
gb|CB165160.1|CB165160 EST00996 Virulent Peronospora parasi... 42 0.065
emb|BX662728.1| Arabidopsis thaliana T-DNA flanking sequenc... 40 0.26
emb|BX662824.1| Arabidopsis thaliana T-DNA flanking sequenc... 40 0.26
gb|BE662737.1|BE662737 EST00258 Arabidopsis Acute Ozone Rev... 40 0.26
gb|CB185573.1|CB185573 EST000106 Arabidopsis Salicylic Acid... 40 0.26
gb|CB185798.1|CB185798 EST00725 Arabidopsis avirulent Pseud... 40 0.26
gb|CB185528.1|CB185528 EST00061 Arabidopsis Salicylic Acid ... 40 0.26
gb|CB185880.1|CB185880 EST01071 Arabidopsis virulent Pseudo... 40 0.26
gb|CB239324.1|CB239324 EST01145 Arabidopsis virulent Pseudo... 40 0.26
gb|CB074223.1|CB074223 EST01000 Virulent Peronospora parasi... 40 0.26
gb|CB074276.1|CB074276 EST00821 Virulent Peronospora parasi... 40 0.26
gb|CB074411.1|CB074411 EST00927 Virulent Peronospora parasi... 40 0.26
gb|CB074582.1|CB074582 EST0088 Virulent Peronospora parasit... 40 0.26
gb|CB074854.1|CB074854 EST03007 Arabidopsis Acute Ozone poo... 40 0.26
gb|CB074862.1|CB074862 EST03015 Arabidopsis Acute Ozone poo... 40 0.26
gb|CB074863.1|CB074863 EST03016 Arabidopsis Acute Ozone poo... 40 0.26
gb|CB097368.1|CB097368 EST00995 Virulent Peronospora parasi... 40 0.26
gb|CF772953.1|CF772953 AG_FSL_10D01 Arabidopsis ag-1 35S:AG... 40 0.26
gb|CF772955.1|CF772955 AG_FSL_10D03 Arabidopsis ag-1 35S:AG... 40 0.26
gb|CF773912.1|CF773912 AG_FSL_24D10 Arabidopsis ag-1 35S:AG... 40 0.26
emb|AX507774.1| Sequence 2469 from Patent WO0216655 40 0.26
>ref|NM_179940.1| Arabidopsis thaliana ATGSL08 (GLUCAN SYNTHASE-LIKE 8);
1,3-beta-glucan synthase/ transferase, transferring
glycosyl groups AT2G36850 (ATGSL08) mRNA, complete cds
Length = 5281
Score = 63.9 bits (32), Expect = 2e-008
Identities = 104/128 (81%)
Strand = Plus / Plus
Query: 222 attacaatgcagttccaaatgtgctctgtattttttactttctcacttggaacaagaacc 281
||||||||||| ||||| |||| ||||| ||||| || || || || || ||||||||
Sbjct: 4063 attacaatgcaattccagttgtgttctgtctttttcacattttctctcgggacaagaact 4122
Query: 282 cactactttggccgtgcaatattacatggaggtgcaaagtatagagcaaccggtagaggt 341
|| |||||||| ||| | || | || || |||||||||||| ||||||| || ||||||
Sbjct: 4123 cattactttggacgtactattcttcacggtggtgcaaagtatcgagcaactggcagaggt 4182
Query: 342 tttgtggt 349
||||||||
Sbjct: 4183 tttgtggt 4190
>gb|CB185570.1|CB185570 EST000103 Arabidopsis Salicylic Acid Subtracted Library Arabidopsis
thaliana cDNA clone SA1-B11 similar to putative
UDP-glucose glucosyltransferase, mRNA sequence
Length = 548
Score = 52.0 bits (26), Expect = 7e-005
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 345 gtggtacctcggccgcgaccacgcta 370
||||||||||||||||||||||||||
Sbjct: 523 gtggtacctcggccgcgaccacgcta 548
>emb|BX661189.1| Arabidopsis thaliana T-DNA flanking sequence GK-671F07-022932,
genomic survey sequence
Length = 108
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 347 ggtacctcggccgcgaccacgcta 370
||||||||||||||||||||||||
Sbjct: 62 ggtacctcggccgcgaccacgcta 39
>emb|BX663297.1| Arabidopsis thaliana T-DNA flanking sequence GK-712B10-022963,
genomic survey sequence
Length = 498
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 347 ggtacctcggccgcgaccacgcta 370
||||||||||||||||||||||||
Sbjct: 427 ggtacctcggccgcgaccacgcta 450
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 348 gtacctcggccgcgaccacg 367
||||||||||||||||||||
Sbjct: 68 gtacctcggccgcgaccacg 49
>emb|BX662798.1| Arabidopsis thaliana T-DNA flanking sequence GK-708G03-022965,
genomic survey sequence
Length = 436
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 348 gtacctcggccgcgaccacgcta 370
|||||||||||||||||||||||
Sbjct: 61 gtacctcggccgcgaccacgcta 39
>gb|CB185577.1|CB185577 EST000110 Arabidopsis Salicylic Acid Subtracted Library Arabidopsis
thaliana cDNA clone SA4-C7 similar to putative coatomer
complex subunit, has G-protein beta with WD-40 repeats,
mRNA sequence
Length = 489
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 348 gtacctcggccgcgaccacgcta 370
|||||||||||||||||||||||
Sbjct: 465 gtacctcggccgcgaccacgcta 487
>gb|CB185485.1|CB185485 EST00018 Arabidopsis Salicylic Acid Subtracted Library Arabidopsis
thaliana cDNA clone SA1-D1 similar to glucosyl
transferase, mRNA sequence
Length = 388
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 348 gtacctcggccgcgaccacgcta 370
|||||||||||||||||||||||
Sbjct: 365 gtacctcggccgcgaccacgcta 387
>gb|CB185533.1|CB185533 EST00066 Arabidopsis Salicylic Acid Subtracted Library Arabidopsis
thaliana cDNA clone SA2-G10 similar to putative
glutathione S-transferase, mRNA sequence
Length = 735
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 348 gtacctcggccgcgaccacgcta 370
|||||||||||||||||||||||
Sbjct: 64 gtacctcggccgcgaccacgcta 42
>gb|CB185851.1|CB185851 EST01042 Arabidopsis virulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone DC3-D6 similar
to UDP-glucosyl transferase, mRNA sequence
Length = 414
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 348 gtacctcggccgcgaccacgcta 370
|||||||||||||||||||||||
Sbjct: 392 gtacctcggccgcgaccacgcta 414
>gb|BE845139.1|BE845139 AD07D05T7 AD A. thaliana (Col-0 gl1) subtracted library enriched
for salt-induced transcripts;10-14 day seedlings 4h
160mM NaCl stress Arabidopsis thaliana cDNA clone
AD07D05 similar to probable lipid transfer protein
T8F5.2, mRNA sequence
Length = 462
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 349 tacctcggccgcgaccacgcta 370
||||||||||||||||||||||
Sbjct: 417 tacctcggccgcgaccacgcta 438
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 349 tacctcggccgcgaccacgcta 370
||||||||||||||||||||||
Sbjct: 378 tacctcggccgcgaccacgcta 399
>gb|BE662730.1|BE662730 EST00251 Arabidopsis Acute Ozone Reverse-Subtracted Library
Arabidopsis thaliana cDNA clone AtAOzHA7 similar to
small nuclear ribosomal protein E, mRNA sequence
Length = 263
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtacat 22
||||||||||||||||||||||
Sbjct: 258 gcggccgcccgggcaggtacat 237
>gb|BE662731.1|BE662731 EST00252 Arabidopsis Acute Ozone Reverse-Subtracted Library
Arabidopsis thaliana cDNA clone AtAOzHA9, mRNA sequence
Length = 328
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtacat 22
||||||||||||||||||||||
Sbjct: 323 gcggccgcccgggcaggtacat 302
>gb|CB185474.1|CB185474 EST00007 Arabidopsis Salicylic Acid Subtracted Library Arabidopsis
thaliana cDNA clone SA1-A9 similar to transcription
factor ZAP1, mRNA sequence
Length = 460
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 349 tacctcggccgcgaccacgcta 370
||||||||||||||||||||||
Sbjct: 439 tacctcggccgcgaccacgcta 460
>gb|CB185495.1|CB185495 EST00028 Arabidopsis Salicylic Acid Subtracted Library Arabidopsis
thaliana cDNA clone SA1-E10 similar to NADH
dehygrogenase-like protein, mRNA sequence
Length = 979
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 349 tacctcggccgcgaccacgcta 370
||||||||||||||||||||||
Sbjct: 514 tacctcggccgcgaccacgcta 535
>gb|CB185508.1|CB185508 EST00041 Arabidopsis Salicylic Acid Subtracted Library Arabidopsis
thaliana cDNA clone SA1-G7 similar to putative Tub
family protein, mRNA sequence
Length = 378
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 349 tacctcggccgcgaccacgcta 370
||||||||||||||||||||||
Sbjct: 357 tacctcggccgcgaccacgcta 378
>gb|CB074186.1|CB074186 EST02508 Early Ovule Development Forward Subtracted Library
Arabidopsis thaliana cDNA clone 1D17G5 similar to blue
copper protein, mRNA sequence
Length = 149
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtacat 22
||||||||||||||||||||||
Sbjct: 14 gcggccgcccgggcaggtacat 35
>emb|BX663278.1| Arabidopsis thaliana T-DNA flanking sequence GK-712A09-022963,
genomic survey sequence
Length = 278
Score = 42.1 bits (21), Expect = 0.065
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtaca 21
|||||||||||||||||||||
Sbjct: 218 gcggccgcccgggcaggtaca 198
>gb|BE845176.1|BE845176 AD08A02T7 AD A. thaliana (Col-0 gl1) subtracted library enriched
for salt-induced transcripts;10-14 day seedlings 4h
160mM NaCl stress Arabidopsis thaliana cDNA clone
AD08A02 similar to peroxidase precursor, mRNA sequence
Length = 163
Score = 42.1 bits (21), Expect = 0.065
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 350 acctcggccgcgaccacgcta 370
|||||||||||||||||||||
Sbjct: 139 acctcggccgcgaccacgcta 159
>gb|BE662936.1|BE662936 EST00086 Arabidopsis Acute Ozone Forward-Subtracted Library
Arabidopsis thaliana cDNA clone AtAOzD61, mRNA sequence
Length = 255
Score = 42.1 bits (21), Expect = 0.065
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtaca 21
|||||||||||||||||||||
Sbjct: 189 gcggccgcccgggcaggtaca 169
>gb|CB185611.1|CB185611 EST00536 Arabidopsis avirulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone RPM3-A5 similar
to nuclear matrix constituent protein 1, mRNA sequence
Length = 431
Score = 42.1 bits (21), Expect = 0.065
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 350 acctcggccgcgaccacgcta 370
|||||||||||||||||||||
Sbjct: 410 acctcggccgcgaccacgcta 430
>gb|CB185622.1|CB185622 EST00547 Arabidopsis avirulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone RPM3-C10 similar
to PR1 like protein, mRNA sequence
Length = 317
Score = 42.1 bits (21), Expect = 0.065
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 350 acctcggccgcgaccacgcta 370
|||||||||||||||||||||
Sbjct: 295 acctcggccgcgaccacgcta 315
>gb|CB185497.1|CB185497 EST00030 Arabidopsis Salicylic Acid Subtracted Library Arabidopsis
thaliana cDNA clone SA1-F1 similar to putative
indole-3-acetate beta-glucosyltransferase, mRNA sequence
Length = 239
Score = 42.1 bits (21), Expect = 0.065
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 350 acctcggccgcgaccacgcta 370
|||||||||||||||||||||
Sbjct: 219 acctcggccgcgaccacgcta 239
>gb|CB185498.1|CB185498 EST00031 Arabidopsis Salicylic Acid Subtracted Library Arabidopsis
thaliana cDNA clone SA1-F11 similar to glutathione
S-transferase, mRNA sequence
Length = 265
Score = 42.1 bits (21), Expect = 0.065
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 350 acctcggccgcgaccacgcta 370
|||||||||||||||||||||
Sbjct: 245 acctcggccgcgaccacgcta 265
>gb|CB185499.1|CB185499 EST00032 Arabidopsis Salicylic Acid Subtracted Library Arabidopsis
thaliana cDNA clone SA1-F3 similar to glucosyl
transferase, mRNA sequence
Length = 366
Score = 42.1 bits (21), Expect = 0.065
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 350 acctcggccgcgaccacgcta 370
|||||||||||||||||||||
Sbjct: 345 acctcggccgcgaccacgcta 365
>gb|CB185509.1|CB185509 EST00042 Arabidopsis Salicylic Acid Subtracted Library Arabidopsis
thaliana cDNA clone SA1-H4 similar to putative protein,
mRNA sequence
Length = 289
Score = 42.1 bits (21), Expect = 0.065
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 350 acctcggccgcgaccacgcta 370
|||||||||||||||||||||
Sbjct: 269 acctcggccgcgaccacgcta 289
>gb|CB185511.1|CB185511 EST00044 Arabidopsis Salicylic Acid Subtracted Library Arabidopsis
thaliana cDNA clone SA2-A11 similar to putative protein,
mRNA sequence
Length = 283
Score = 42.1 bits (21), Expect = 0.065
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 350 acctcggccgcgaccacgcta 370
|||||||||||||||||||||
Sbjct: 262 acctcggccgcgaccacgcta 282
>gb|CB185512.1|CB185512 EST00045 Arabidopsis Salicylic Acid Subtracted Library Arabidopsis
thaliana cDNA clone SA2-A2 similar to putative protein,
mRNA sequence
Length = 283
Score = 42.1 bits (21), Expect = 0.065
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 350 acctcggccgcgaccacgcta 370
|||||||||||||||||||||
Sbjct: 262 acctcggccgcgaccacgcta 282
>gb|CB185532.1|CB185532 EST00065 Arabidopsis Salicylic Acid Subtracted Library Arabidopsis
thaliana cDNA clone SA2-G1 similar to
acyltransferase-like protein, mRNA sequence
Length = 264
Score = 42.1 bits (21), Expect = 0.065
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 350 acctcggccgcgaccacgcta 370
|||||||||||||||||||||
Sbjct: 244 acctcggccgcgaccacgcta 264
>gb|CB185943.1|CB185943 EST01134 Arabidopsis virulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone DC8-H5 similar
to WD repeat domain containing protein, mRNA sequence
Length = 473
Score = 42.1 bits (21), Expect = 0.065
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 350 acctcggccgcgaccacgcta 370
|||||||||||||||||||||
Sbjct: 89 acctcggccgcgaccacgcta 69
>gb|CB074227.1|CB074227 EST01003 Virulent Peronospora parasitica Infected Arabidopsis
reverse-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-RBC07 similar to PSI subunit, mRNA sequence
Length = 249
Score = 42.1 bits (21), Expect = 0.065
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtaca 21
|||||||||||||||||||||
Sbjct: 243 gcggccgcccgggcaggtaca 223
>gb|CB074279.1|CB074279 EST00792 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-BB7 similar to PUTATIVE PROTEIN, mRNA sequence
Length = 320
Score = 42.1 bits (21), Expect = 0.065
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtaca 21
|||||||||||||||||||||
Sbjct: 232 gcggccgcccgggcaggtaca 212
>gb|CB165160.1|CB165160 EST00996 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-EH12 similar to putative protein, mRNA
sequence
Length = 271
Score = 42.1 bits (21), Expect = 0.065
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtaca 21
|||||||||||||||||||||
Sbjct: 266 gcggccgcccgggcaggtaca 246
>emb|BX662728.1| Arabidopsis thaliana T-DNA flanking sequence GK-708B12-022965,
genomic survey sequence
Length = 378
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 32 gcggccgcccgggcaggtac 51
>emb|BX662824.1| Arabidopsis thaliana T-DNA flanking sequence GK-708H07-022965,
genomic survey sequence
Length = 416
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 33 gcggccgcccgggcaggtac 52
>gb|BE662737.1|BE662737 EST00258 Arabidopsis Acute Ozone Reverse-Subtracted Library
Arabidopsis thaliana cDNA clone AtaOzHC2 similar to
Lhca2 chlorophyll a/b-binding protein, mRNA sequence
Length = 450
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 62 gcggccgcccgggcaggtac 81
>gb|CB185573.1|CB185573 EST000106 Arabidopsis Salicylic Acid Subtracted Library Arabidopsis
thaliana cDNA clone SA2-E8 similar to putative
glutathione transferase, mRNA sequence
Length = 134
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 351 cctcggccgcgaccacgcta 370
||||||||||||||||||||
Sbjct: 115 cctcggccgcgaccacgcta 134
>gb|CB185798.1|CB185798 EST00725 Arabidopsis avirulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone AVR2-A8 similar
to hypothetical protein targeted to chloroplast, mRNA
sequence
Length = 456
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 455 gcggccgcccgggcaggtac 436
>gb|CB185528.1|CB185528 EST00061 Arabidopsis Salicylic Acid Subtracted Library Arabidopsis
thaliana cDNA clone SA2-F2 similar to putative protein
similar to receptor-like protein kinase, mRNA sequence
Length = 623
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 350 acctcggccgcgaccacgct 369
||||||||||||||||||||
Sbjct: 604 acctcggccgcgaccacgct 623
>gb|CB185880.1|CB185880 EST01071 Arabidopsis virulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone DC4-H4 similar
to putative protein with homology to rubisco small
subunit, mRNA sequence
Length = 370
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 65 gcggccgcccgggcaggtac 84
>gb|CB239324.1|CB239324 EST01145 Arabidopsis virulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone DC1-C2 similar
to putative tyrosine aminotransferase, mRNA sequence
Length = 579
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 40 gcggccgcccgggcaggtac 59
>gb|CB074223.1|CB074223 EST01000 Virulent Peronospora parasitica Infected Arabidopsis
reverse-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-RAA10 similar to chlorophyll a/b-binding
protein, mRNA sequence
Length = 527
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 385 gcggccgcccgggcaggtac 366
>gb|CB074276.1|CB074276 EST00821 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-BA9, mRNA sequence
Length = 560
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 2 cggccgcccgggcaggtaca 21
||||||||||||||||||||
Sbjct: 557 cggccgcccgggcaggtaca 538
>gb|CB074411.1|CB074411 EST00927 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-FF9 similar to UNKNOWN PROTEIN, mRNA sequence
Length = 421
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 416 gcggccgcccgggcaggtac 397
>gb|CB074582.1|CB074582 EST0088 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-EB10, mRNA sequence
Length = 406
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 401 gcggccgcccgggcaggtac 382
>gb|CB074854.1|CB074854 EST03007 Arabidopsis Acute Ozone pooled time-points
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone AtAOzLC01 similar to PSII 32Kda protein, mRNA
sequence
Length = 358
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 348 gcggccgcccgggcaggtac 329
>gb|CB074862.1|CB074862 EST03015 Arabidopsis Acute Ozone pooled time-points
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone AtAOzLH04 similar to PsbA gene in chloroplast
genome, mRNA sequence
Length = 360
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 351 gcggccgcccgggcaggtac 332
>gb|CB074863.1|CB074863 EST03016 Arabidopsis Acute Ozone pooled time-points
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone AtAOzLH10 similar to putative protein, mRNA
sequence
Length = 305
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 297 gcggccgcccgggcaggtac 278
>gb|CB097368.1|CB097368 EST00995 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-AA5 similar to NAD dependent epimerase, mRNA
sequence
Length = 601
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 471 gcggccgcccgggcaggtac 452
>gb|CF772953.1|CF772953 AG_FSL_10D01 Arabidopsis ag-1 35S:AG-GR forward subtraction library
Arabidopsis thaliana cDNA clone 10D01, mRNA sequence
Length = 700
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 351 cctcggccgcgaccacgcta 370
||||||||||||||||||||
Sbjct: 580 cctcggccgcgaccacgcta 599
>gb|CF772955.1|CF772955 AG_FSL_10D03 Arabidopsis ag-1 35S:AG-GR forward subtraction library
Arabidopsis thaliana cDNA clone 10D03, mRNA sequence
Length = 640
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 142 gcggccgcccgggcaggtac 123
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 216,934
Number of Sequences: 1013581
Number of extensions: 216934
Number of successful extensions: 17165
Number of sequences better than 0.5: 53
Number of HSP's better than 0.5 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17102
Number of HSP's gapped (non-prelim): 62
length of query: 370
length of database: 908,940,872
effective HSP length: 19
effective length of query: 351
effective length of database: 889,682,833
effective search space: 312278674383
effective search space used: 312278674383
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)