BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE6a06.yg.3.1
(2118 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_121456.1| Arabidopsis thaliana transcription coactiv... 76 3e-011
gb|BZ763717.1|BZ763717 SALK_121220.41.60.x Arabidopsis thal... 64 1e-007
gb|BZ763799.1|BZ763799 SALK_121316.55.25.x Arabidopsis thal... 64 1e-007
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 64 1e-007
emb|AL163792.1|ATT15N1 Arabidopsis thaliana DNA chromosome ... 64 1e-007
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 64 1e-007
gb|B98658.1|B98658 F19B7TFB IGF Arabidopsis thaliana genomi... 48 0.006
gb|T45901.1|T45901 9164 Lambda-PRL2 Arabidopsis thaliana cD... 48 0.006
gb|BE525892.1|BE525892 M63J09STM Arabidopsis developing see... 48 0.006
gb|CB258879.1|CB258879 10-E012734-014-002-D03-T7R MPIZ-ADIS... 48 0.006
gb|BX834452.1|BX834452 BX834452 Arabidopsis thaliana Adult ... 48 0.006
gb|CK119996.1|CK119996 219b03.p AtM1 Arabidopsis thaliana c... 48 0.006
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 48 0.006
gb|AC013427.3|T1K7 Sequence of BAC T1K7 from Arabidopsis th... 48 0.006
gb|BT011623.1| Arabidopsis thaliana At1g26580 mRNA, complet... 48 0.006
gb|BT012271.1| Arabidopsis thaliana At1g26580 gene, complet... 48 0.006
ref|NM_102420.3| Arabidopsis thaliana unknown protein AT1G2... 48 0.006
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 48 0.006
gb|CL481313.1|CL481313 SAIL_33_A09.v1 SAIL Collection Arabi... 44 0.098
gb|CL505340.1|CL505340 SAIL_749_F03.v1 SAIL Collection Arab... 44 0.098
gb|AY201088.1|AY201088 AY201088 Arabidopsis thaliana Landsb... 44 0.098
gb|BE526940.1|BE526940 M66H01STM Arabidopsis developing see... 44 0.098
gb|AV823108.1|AV823108 AV823108 RAFL5 Arabidopsis thaliana ... 44 0.098
gb|BX840910.1|BX840910 BX840910 Arabidopsis thaliana Flower... 44 0.098
gb|AV526280.1|AV526280 AV526280 Arabidopsis thaliana aboveg... 44 0.098
gb|BP799841.1|BP799841 BP799841 RAFL14 Arabidopsis thaliana... 44 0.098
gb|BP809648.1|BP809648 BP809648 RAFL16 Arabidopsis thaliana... 44 0.098
gb|BP810160.1|BP810160 BP810160 RAFL16 Arabidopsis thaliana... 44 0.098
gb|BP856456.1|BP856456 BP856456 RAFL21 Arabidopsis thaliana... 44 0.098
gb|BP866840.1|BP866840 BP866840 RAFL21 Arabidopsis thaliana... 44 0.098
gb|BP867988.1|BP867988 BP867988 RAFL21 Arabidopsis thaliana... 44 0.098
gb|BP868848.1|BP868848 BP868848 RAFL21 Arabidopsis thaliana... 44 0.098
gb|AF411783.1|AF411783 Arabidopsis thaliana AT3g59090/F17J1... 44 0.098
gb|AC005508.1|AC005508 Arabidopsis thaliana chromosome I BA... 44 0.098
emb|BX823658.1|CNS0A4NF Arabidopsis thaliana Full-length cD... 44 0.098
emb|BX824740.1|CNS0A5IG Arabidopsis thaliana Full-length cD... 44 0.098
emb|BX823791.1|CNS0A7FF Arabidopsis thaliana Full-length cD... 44 0.098
emb|BX822122.1|CNS0A7LS Arabidopsis thaliana Full-length cD... 44 0.098
dbj|AB026645.1| Arabidopsis thaliana genomic DNA, chromosom... 44 0.098
gb|BT012224.1| Arabidopsis thaliana At3g12950 gene, complet... 44 0.098
gb|BT015744.1| Arabidopsis thaliana At3g12950 mRNA, complet... 44 0.098
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 44 0.098
emb|AL163527.1|ATF17J16 Arabidopsis thaliana DNA chromosome... 44 0.098
ref|NM_102453.1| Arabidopsis thaliana unknown protein AT1G2... 44 0.098
ref|NM_180388.1| Arabidopsis thaliana unknown protein AT3G5... 44 0.098
ref|NM_115771.2| Arabidopsis thaliana unknown protein AT3G5... 44 0.098
ref|NM_112131.3| Arabidopsis thaliana unknown protein AT3G1... 44 0.098
ref|NM_001035815.1| Arabidopsis thaliana unknown protein AT... 44 0.098
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 44 0.098
gb|CL470023.1|CL470023 SAIL_136_F10.v2 SAIL Collection Arab... 42 0.39
gb|AU228011.1|AU228011 AU228011 RAFL15 Arabidopsis thaliana... 42 0.39
gb|BX838943.1|BX838943 BX838943 Arabidopsis thaliana Flower... 42 0.39
gb|BP646528.1|BP646528 BP646528 RAFL19 Arabidopsis thaliana... 42 0.39
gb|BP839038.1|BP839038 BP839038 RAFL19 Arabidopsis thaliana... 42 0.39
emb|AJ505146.1|ATH505146 Arabidopsis thaliana mRNA for puta... 42 0.39
dbj|AB015477.1| Arabidopsis thaliana genomic DNA, chromosom... 42 0.39
dbj|AB026647.1| Arabidopsis thaliana genomic DNA, chromosom... 42 0.39
dbj|AP000731.1| Arabidopsis thaliana genomic DNA, chromosom... 42 0.39
emb|AL137081.1|ATF9D24 Arabidopsis thaliana DNA chromosome ... 42 0.39
ref|NM_115673.2| Arabidopsis thaliana unknown protein AT3G5... 42 0.39
ref|NM_113414.2| Arabidopsis thaliana CDC45 (CELL DIVISION ... 42 0.39
>ref|NM_121456.1| Arabidopsis thaliana transcription coactivator AT5G14520 mRNA,
complete cds
Length = 1773
Score = 75.8 bits (38), Expect = 3e-011
Identities = 92/110 (83%)
Strand = Plus / Plus
Query: 311 acttacaagcttgataggcttgtccttgaaaggtatccaacattcgttgatgctcttcgt 370
||||||||||||||||| | ||| ||| |||||||||||||| ||||||| || ||
Sbjct: 328 acttacaagcttgatagattgatccgtgagaggtatccaacatttattgatgcactgcga 387
Query: 371 gacttggatgactgccttacaatggtgcatctgtttgcggcattacctgc 420
|||||||||||||| || || ||||| ||||| ||||||| ||||||||
Sbjct: 388 gacttggatgactgtctcactatggttcatctttttgcggtgttacctgc 437
Score = 48.1 bits (24), Expect = 0.006
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 1238 tatgttcaaccacagtgggtctttgattgtgtaaatgctcgtatcatattgccaac 1293
||||| |||||||||||| ||| ||| ||||| |||||||| || || ||||||||
Sbjct: 1195 tatgtgcaaccacagtggatctatgactgtgtgaatgctcgcataatcttgccaac 1250
>gb|BZ763717.1|BZ763717 SALK_121220.41.60.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_121220.41.60.x,
DNA sequence
Length = 280
Score = 63.9 bits (32), Expect = 1e-007
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 341 aggtatccaacattcgttgatgctcttcgtgacttggatgactgccttacaatggtgcat 400
|||||||||||||| ||||||| || || |||||||||||||| || || ||||| |||
Sbjct: 158 aggtatccaacatttattgatgcactgcgagacttggatgactgtctcactatggttcat 99
Query: 401 ctgtttgcggcattacctgc 420
|| ||||||| ||||||||
Sbjct: 98 ctttttgcggtgttacctgc 79
>gb|BZ763799.1|BZ763799 SALK_121316.55.25.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_121316.55.25.x,
DNA sequence
Length = 300
Score = 63.9 bits (32), Expect = 1e-007
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 341 aggtatccaacattcgttgatgctcttcgtgacttggatgactgccttacaatggtgcat 400
|||||||||||||| ||||||| || || |||||||||||||| || || ||||| |||
Sbjct: 178 aggtatccaacatttattgatgcactgcgagacttggatgactgtctcactatggttcat 119
Query: 401 ctgtttgcggcattacctgc 420
|| ||||||| ||||||||
Sbjct: 118 ctttttgcggtgttacctgc 99
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 63.9 bits (32), Expect = 1e-007
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 341 aggtatccaacattcgttgatgctcttcgtgacttggatgactgccttacaatggtgcat 400
|||||||||||||| ||||||| || || |||||||||||||| || || ||||| |||
Sbjct: 4466460 aggtatccaacatttattgatgcactgcgagacttggatgactgtctcactatggttcat 4466401
Query: 401 ctgtttgcggcattacctgc 420
|| ||||||| ||||||||
Sbjct: 4466400 ctttttgcggtgttacctgc 4466381
Score = 48.1 bits (24), Expect = 0.006
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 1238 tatgttcaaccacagtgggtctttgattgtgtaaatgctcgtatcatattgccaac 1293
||||| |||||||||||| ||| ||| ||||| |||||||| || || ||||||||
Sbjct: 4464668 tatgtgcaaccacagtggatctatgactgtgtgaatgctcgcataatcttgccaac 4464613
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1010 gatgatgcagatgatgatgat 1030
|||||||||||||||||||||
Sbjct: 12791504 gatgatgcagatgatgatgat 12791524
>emb|AL163792.1|ATT15N1 Arabidopsis thaliana DNA chromosome 5, BAC clone T15N1 (ESSA project)
Length = 86574
Score = 63.9 bits (32), Expect = 1e-007
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 341 aggtatccaacattcgttgatgctcttcgtgacttggatgactgccttacaatggtgcat 400
|||||||||||||| ||||||| || || |||||||||||||| || || ||||| |||
Sbjct: 20404 aggtatccaacatttattgatgcactgcgagacttggatgactgtctcactatggttcat 20345
Query: 401 ctgtttgcggcattacctgc 420
|| ||||||| ||||||||
Sbjct: 20344 ctttttgcggtgttacctgc 20325
Score = 48.1 bits (24), Expect = 0.006
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 1238 tatgttcaaccacagtgggtctttgattgtgtaaatgctcgtatcatattgccaac 1293
||||| |||||||||||| ||| ||| ||||| |||||||| || || ||||||||
Sbjct: 18612 tatgtgcaaccacagtggatctatgactgtgtgaatgctcgcataatcttgccaac 18557
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 63.9 bits (32), Expect = 1e-007
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 341 aggtatccaacattcgttgatgctcttcgtgacttggatgactgccttacaatggtgcat 400
|||||||||||||| ||||||| || || |||||||||||||| || || ||||| |||
Sbjct: 4683487 aggtatccaacatttattgatgcactgcgagacttggatgactgtctcactatggttcat 4683428
Query: 401 ctgtttgcggcattacctgc 420
|| ||||||| ||||||||
Sbjct: 4683427 ctttttgcggtgttacctgc 4683408
Score = 48.1 bits (24), Expect = 0.006
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 1238 tatgttcaaccacagtgggtctttgattgtgtaaatgctcgtatcatattgccaac 1293
||||| |||||||||||| ||| ||| ||||| |||||||| || || ||||||||
Sbjct: 4681695 tatgtgcaaccacagtggatctatgactgtgtgaatgctcgcataatcttgccaac 4681640
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1010 gatgatgcagatgatgatgat 1030
|||||||||||||||||||||
Sbjct: 13755359 gatgatgcagatgatgatgat 13755379
>gb|B98658.1|B98658 F19B7TFB IGF Arabidopsis thaliana genomic clone F19B7, DNA sequence
Length = 447
Score = 48.1 bits (24), Expect = 0.006
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 1238 tatgttcaaccacagtgggtctttgattgtgtaaatgctcgtatcatattgccaac 1293
||||| |||||||||||| ||| ||| ||||| |||||||| || || ||||||||
Sbjct: 184 tatgtgcaaccacagtggatctatgactgtgtgaatgctcgcataatcttgccaac 129
>gb|T45901.1|T45901 9164 Lambda-PRL2 Arabidopsis thaliana cDNA clone 133J24T7, mRNA
sequence
Length = 417
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1011 atgatgcagatgatgatgatactaaaga 1038
|||||| |||||||||||||||||||||
Sbjct: 1 atgatgaagatgatgatgatactaaaga 28
>gb|BE525892.1|BE525892 M63J09STM Arabidopsis developing seed Arabidopsis thaliana cDNA clone
600034437R1 5', mRNA sequence
Length = 267
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1011 atgatgcagatgatgatgatactaaaga 1038
|||||| |||||||||||||||||||||
Sbjct: 125 atgatgaagatgatgatgatactaaaga 152
>gb|CB258879.1|CB258879 10-E012734-014-002-D03-T7R MPIZ-ADIS-014 Arabidopsis thaliana cDNA
clone MPIZp771D032Q 5-PRIME, mRNA sequence
Length = 622
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1011 atgatgcagatgatgatgatactaaaga 1038
|||||| |||||||||||||||||||||
Sbjct: 155 atgatgaagatgatgatgatactaaaga 182
>gb|BX834452.1|BX834452 BX834452 Arabidopsis thaliana Adult vegetative tissue Col-0
Arabidopsis thaliana cDNA clone GSLTLS7ZH09 3PRIM, mRNA
sequence
Length = 745
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1011 atgatgcagatgatgatgatactaaaga 1038
|||||| |||||||||||||||||||||
Sbjct: 468 atgatgaagatgatgatgatactaaaga 441
>gb|CK119996.1|CK119996 219b03.p AtM1 Arabidopsis thaliana cDNA clone MPMGp2011B03219
5-PRIME, mRNA sequence
Length = 772
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1011 atgatgcagatgatgatgatactaaaga 1038
|||||| |||||||||||||||||||||
Sbjct: 382 atgatgaagatgatgatgatactaaaga 409
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1011 atgatgcagatgatgatgatactaaaga 1038
|||||| |||||||||||||||||||||
Sbjct: 9195450 atgatgaagatgatgatgatactaaaga 9195477
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1675 agaggaggatgatgatgatgat 1696
||||||||||||||||||||||
Sbjct: 9327044 agaggaggatgatgatgatgat 9327065
>gb|AC013427.3|T1K7 Sequence of BAC T1K7 from Arabidopsis thaliana chromosome 1, complete
sequence
Length = 89473
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1011 atgatgcagatgatgatgatactaaaga 1038
|||||| |||||||||||||||||||||
Sbjct: 13600 atgatgaagatgatgatgatactaaaga 13573
>gb|BT011623.1| Arabidopsis thaliana At1g26580 mRNA, complete cds
Length = 1754
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1011 atgatgcagatgatgatgatactaaaga 1038
|||||| |||||||||||||||||||||
Sbjct: 1211 atgatgaagatgatgatgatactaaaga 1238
>gb|BT012271.1| Arabidopsis thaliana At1g26580 gene, complete cds
Length = 1482
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1011 atgatgcagatgatgatgatactaaaga 1038
|||||| |||||||||||||||||||||
Sbjct: 1112 atgatgaagatgatgatgatactaaaga 1139
>ref|NM_102420.3| Arabidopsis thaliana unknown protein AT1G26580 mRNA, complete cds
Length = 2788
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1011 atgatgcagatgatgatgatactaaaga 1038
|||||| |||||||||||||||||||||
Sbjct: 2126 atgatgaagatgatgatgatactaaaga 2153
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 1011 atgatgcagatgatgatgatactaaaga 1038
|||||| |||||||||||||||||||||
Sbjct: 9186830 atgatgaagatgatgatgatactaaaga 9186857
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1675 agaggaggatgatgatgatgat 1696
||||||||||||||||||||||
Sbjct: 9318424 agaggaggatgatgatgatgat 9318445
>gb|CL481313.1|CL481313 SAIL_33_A09.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_33_A09.v1, DNA sequence
Length = 1483
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1757 aaagaaaagaaaaaggagaaag 1778
||||||||||||||||||||||
Sbjct: 153 aaagaaaagaaaaaggagaaag 174
>gb|CL505340.1|CL505340 SAIL_749_F03.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_749_F03.v1, DNA sequence
Length = 934
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1674 aagaggaggatgatgatgatga 1695
||||||||||||||||||||||
Sbjct: 667 aagaggaggatgatgatgatga 688
>gb|AY201088.1|AY201088 AY201088 Arabidopsis thaliana Landsberg DNA Arabidopsis thaliana
genomic clone GT11578.Ds5.07.10.2001.jw02.573, DNA
sequence
Length = 573
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1674 aagaggaggatgatgatgatga 1695
||||||||||||||||||||||
Sbjct: 437 aagaggaggatgatgatgatga 458
>gb|BE526940.1|BE526940 M66H01STM Arabidopsis developing seed Arabidopsis thaliana cDNA clone
600035604R1 5', mRNA sequence
Length = 257
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1675 agaggaggatgatgatgatgat 1696
||||||||||||||||||||||
Sbjct: 142 agaggaggatgatgatgatgat 163
>gb|AV823108.1|AV823108 AV823108 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-15-H04 5', mRNA
sequence
Length = 664
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1675 agaggaggatgatgatgatgat 1696
||||||||||||||||||||||
Sbjct: 507 agaggaggatgatgatgatgat 528
>gb|BX840910.1|BX840910 BX840910 Arabidopsis thaliana Flowers and buds Col-0 Arabidopsis
thaliana cDNA clone GSLTFB53ZF06 5PRIM, mRNA sequence
Length = 957
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1674 aagaggaggatgatgatgatga 1695
||||||||||||||||||||||
Sbjct: 355 aagaggaggatgatgatgatga 376
>gb|AV526280.1|AV526280 AV526280 Arabidopsis thaliana aboveground organs two to six-week old
Arabidopsis thaliana cDNA clone APZ09c01R 5', mRNA
sequence
Length = 550
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1674 aagaggaggatgatgatgatga 1695
||||||||||||||||||||||
Sbjct: 173 aagaggaggatgatgatgatga 194
>gb|BP799841.1|BP799841 BP799841 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-12-L04 5',
mRNA sequence
Length = 412
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1674 aagaggaggatgatgatgatga 1695
||||||||||||||||||||||
Sbjct: 308 aagaggaggatgatgatgatga 329
>gb|BP809648.1|BP809648 BP809648 RAFL16 Arabidopsis thaliana cDNA clone RAFL24-22-J21 5',
mRNA sequence
Length = 382
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1674 aagaggaggatgatgatgatga 1695
||||||||||||||||||||||
Sbjct: 358 aagaggaggatgatgatgatga 379
>gb|BP810160.1|BP810160 BP810160 RAFL16 Arabidopsis thaliana cDNA clone RAFL24-24-O16 5',
mRNA sequence
Length = 386
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1674 aagaggaggatgatgatgatga 1695
||||||||||||||||||||||
Sbjct: 355 aagaggaggatgatgatgatga 376
>gb|BP856456.1|BP856456 BP856456 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-30-B02 5',
mRNA sequence
Length = 417
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1674 aagaggaggatgatgatgatga 1695
||||||||||||||||||||||
Sbjct: 308 aagaggaggatgatgatgatga 329
>gb|BP866840.1|BP866840 BP866840 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-79-B06 5',
mRNA sequence
Length = 389
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1674 aagaggaggatgatgatgatga 1695
||||||||||||||||||||||
Sbjct: 307 aagaggaggatgatgatgatga 328
>gb|BP867988.1|BP867988 BP867988 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-82-N17 5',
mRNA sequence
Length = 377
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1674 aagaggaggatgatgatgatga 1695
||||||||||||||||||||||
Sbjct: 304 aagaggaggatgatgatgatga 325
>gb|BP868848.1|BP868848 BP868848 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-85-M05 5',
mRNA sequence
Length = 385
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1674 aagaggaggatgatgatgatga 1695
||||||||||||||||||||||
Sbjct: 303 aagaggaggatgatgatgatga 324
>gb|AF411783.1|AF411783 Arabidopsis thaliana AT3g59090/F17J16_140 mRNA, complete cds
Length = 1532
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1675 agaggaggatgatgatgatgat 1696
||||||||||||||||||||||
Sbjct: 507 agaggaggatgatgatgatgat 528
>gb|AC005508.1|AC005508 Arabidopsis thaliana chromosome I BAC T2P11 genomic sequence, complete
sequence
Length = 85372
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1675 agaggaggatgatgatgatgat 1696
||||||||||||||||||||||
Sbjct: 26350 agaggaggatgatgatgatgat 26371
>emb|BX823658.1|CNS0A4NF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS63ZA09 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1554
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1675 agaggaggatgatgatgatgat 1696
||||||||||||||||||||||
Sbjct: 492 agaggaggatgatgatgatgat 513
>emb|BX824740.1|CNS0A5IG Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH69ZE04 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1447
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1675 agaggaggatgatgatgatgat 1696
||||||||||||||||||||||
Sbjct: 446 agaggaggatgatgatgatgat 467
>emb|BX823791.1|CNS0A7FF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS76ZA04 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1985
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1674 aagaggaggatgatgatgatga 1695
||||||||||||||||||||||
Sbjct: 320 aagaggaggatgatgatgatga 341
>emb|BX822122.1|CNS0A7LS Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB14ZG05 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1475
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1675 agaggaggatgatgatgatgat 1696
||||||||||||||||||||||
Sbjct: 489 agaggaggatgatgatgatgat 510
>dbj|AB026645.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGH6
Length = 81020
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1674 aagaggaggatgatgatgatga 1695
||||||||||||||||||||||
Sbjct: 25077 aagaggaggatgatgatgatga 25056
>gb|BT012224.1| Arabidopsis thaliana At3g12950 gene, complete cds
Length = 1976
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1674 aagaggaggatgatgatgatga 1695
||||||||||||||||||||||
Sbjct: 270 aagaggaggatgatgatgatga 291
>gb|BT015744.1| Arabidopsis thaliana At3g12950 mRNA, complete cds
Length = 1677
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1674 aagaggaggatgatgatgatga 1695
||||||||||||||||||||||
Sbjct: 128 aagaggaggatgatgatgatga 149
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1675 agaggaggatgatgatgatgat 1696
||||||||||||||||||||||
Sbjct: 21799151 agaggaggatgatgatgatgat 21799172
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1674 aagaggaggatgatgatgatga 1695
||||||||||||||||||||||
Sbjct: 4129900 aagaggaggatgatgatgatga 4129879
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1676 gaggaggatgatgatgatgat 1696
|||||||||||||||||||||
Sbjct: 21476268 gaggaggatgatgatgatgat 21476288
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1676 gaggaggatgatgatgatgat 1696
|||||||||||||||||||||
Sbjct: 9085659 gaggaggatgatgatgatgat 9085679
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1757 aaagaaaagaaaaaggagaaa 1777
|||||||||||||||||||||
Sbjct: 7936803 aaagaaaagaaaaaggagaaa 7936823
>emb|AL163527.1|ATF17J16 Arabidopsis thaliana DNA chromosome 3, BAC clone F17J16
Length = 89517
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1675 agaggaggatgatgatgatgat 1696
||||||||||||||||||||||
Sbjct: 53837 agaggaggatgatgatgatgat 53858
>ref|NM_102453.1| Arabidopsis thaliana unknown protein AT1G26890 mRNA, complete cds
Length = 843
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1675 agaggaggatgatgatgatgat 1696
||||||||||||||||||||||
Sbjct: 624 agaggaggatgatgatgatgat 645
>ref|NM_180388.1| Arabidopsis thaliana unknown protein AT3G59090 transcript variant
AT3G59090.1 mRNA, complete cds
Length = 1643
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1675 agaggaggatgatgatgatgat 1696
||||||||||||||||||||||
Sbjct: 507 agaggaggatgatgatgatgat 528
>ref|NM_115771.2| Arabidopsis thaliana unknown protein AT3G59090 transcript variant
AT3G59090.2 mRNA, complete cds
Length = 1532
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1675 agaggaggatgatgatgatgat 1696
||||||||||||||||||||||
Sbjct: 507 agaggaggatgatgatgatgat 528
>ref|NM_112131.3| Arabidopsis thaliana unknown protein AT3G12950 mRNA, complete cds
Length = 2174
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1674 aagaggaggatgatgatgatga 1695
||||||||||||||||||||||
Sbjct: 355 aagaggaggatgatgatgatga 376
>ref|NM_001035815.1| Arabidopsis thaliana unknown protein AT3G59090 transcript variant
AT3G59090.3 mRNA, complete cds
Length = 1675
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1675 agaggaggatgatgatgatgat 1696
||||||||||||||||||||||
Sbjct: 539 agaggaggatgatgatgatgat 560
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1675 agaggaggatgatgatgatgat 1696
||||||||||||||||||||||
Sbjct: 21851583 agaggaggatgatgatgatgat 21851604
Score = 44.1 bits (22), Expect = 0.098
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1674 aagaggaggatgatgatgatga 1695
||||||||||||||||||||||
Sbjct: 4134698 aagaggaggatgatgatgatga 4134677
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1676 gaggaggatgatgatgatgat 1696
|||||||||||||||||||||
Sbjct: 21528700 gaggaggatgatgatgatgat 21528720
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1676 gaggaggatgatgatgatgat 1696
|||||||||||||||||||||
Sbjct: 9144842 gaggaggatgatgatgatgat 9144862
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1757 aaagaaaagaaaaaggagaaa 1777
|||||||||||||||||||||
Sbjct: 7986346 aaagaaaagaaaaaggagaaa 7986366
>gb|CL470023.1|CL470023 SAIL_136_F10.v2 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_136_F10.v2, DNA sequence
Length = 927
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1676 gaggaggatgatgatgatgat 1696
|||||||||||||||||||||
Sbjct: 135 gaggaggatgatgatgatgat 155
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,622,713
Number of Sequences: 1013581
Number of extensions: 1622713
Number of successful extensions: 175380
Number of sequences better than 0.5: 61
Number of HSP's better than 0.5 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 164025
Number of HSP's gapped (non-prelim): 11302
length of query: 2118
length of database: 908,940,872
effective HSP length: 21
effective length of query: 2097
effective length of database: 887,655,671
effective search space: 1861413942087
effective search space used: 1861413942087
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)