BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE37h07.yg.2.1
(642 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NM_179940.1| Arabidopsis thaliana ATGSL08 (GLUCAN SYNTH... 68 2e-009
gb|F14233.1|F14233 ATTS5155 Gif-SiliqueB Arabidopsis thalia... 52 1e-004
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 50 5e-004
gb|AF237733.1|AF237733 Arabidopsis thaliana callose synthas... 50 5e-004
emb|AX412747.1| Sequence 511 from Patent WO0222675 50 5e-004
emb|AX441264.1| Sequence 18 from Patent EP1209228 50 5e-004
emb|AX508002.1| Sequence 2697 from Patent WO0216655 50 5e-004
dbj|BD181338.1| A stress-responsive promoter 50 5e-004
gb|AC007153.2| Arabidopsis thaliana chromosome I BAC F3F20 ... 50 5e-004
gb|AC005106.2|AC005106 Genomic sequence for Arabidopsis tha... 50 5e-004
ref|NM_100436.2| Arabidopsis thaliana CALS1 (CALLOSE SYNTHA... 50 5e-004
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 50 5e-004
gb|AC006922.7| Arabidopsis thaliana chromosome 2 clone T1J8... 48 0.002
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 48 0.002
gb|AC006223.4| Arabidopsis thaliana chromosome 2 clone F22D... 46 0.007
dbj|AK117353.1| Arabidopsis thaliana At2g31960 mRNA for put... 46 0.007
ref|NM_179847.1| Arabidopsis thaliana ATGSL03 (GLUCAN SYNTH... 46 0.007
gb|CL475128.1|CL475128 SAIL_232_C06.v1 SAIL Collection Arab... 40 0.46
gb|BX836766.1|BX836766 BX836766 Arabidopsis thaliana Flower... 40 0.46
gb|AC007592.4|AC007592 Genomic sequence for Arabidopsis tha... 40 0.46
ref|NM_100528.1| Arabidopsis thaliana ATGSL07 (GLUCAN SYNTH... 40 0.46
>ref|NM_179940.1| Arabidopsis thaliana ATGSL08 (GLUCAN SYNTHASE-LIKE 8);
1,3-beta-glucan synthase/ transferase, transferring
glycosyl groups AT2G36850 (ATGSL08) mRNA, complete cds
Length = 5281
Score = 67.9 bits (34), Expect = 2e-009
Identities = 161/207 (77%)
Strand = Plus / Minus
Query: 57 tcctctgaatgtctggatatgcgcctgctcctcatcccaccaagattcccaactnnnnnc 116
|||||| ||||| |||||||||||||| || || |||||||| || |||||||| |
Sbjct: 4536 tcctcttaatgtttggatatgcgcctgttcttcctcccaccacgactcccaactgagctc 4477
Query: 117 accctttacaccaactccacctttataaannnaccannntgtccagtcatcaaagtcctc 176
|||||||| || ||||||||||| || | ||| |||||| ||||| |||||
Sbjct: 4476 tccctttactcccactccacctttgtacataagccaactgacccagtcttcaaaatcctc 4417
Query: 177 aacagtcttttgccactcgaaaccagaagggttgaaaatgtaaggcgcgaaaagccagga 236
|||||||||||||| || || ||||| || ||||| || || || || || | ||||||
Sbjct: 4416 gacagtcttttgccattcaaatccagagggattgaagatatagggtgcaaacaaccagga 4357
Query: 237 cataacgaggaaccaactactgatagt 263
|| || ||||||||||| ||||||||
Sbjct: 4356 tattacaaggaaccaactgctgatagt 4330
Score = 56.0 bits (28), Expect = 8e-006
Identities = 77/96 (80%)
Strand = Plus / Minus
Query: 343 gctttgacaaagtgacttnnagaatagagcctataattttcagcaaacnttatgtgccnn 402
||||| ||||| |||||| |||||| || || ||||| || |||||| ||||||||
Sbjct: 4250 gctttaacaaaatgacttctagaataaagtctgtaattatcggcaaactttatgtgctga 4191
Query: 403 acaacaaaacctctnnnagtagcacgatactttgca 438
|| ||||||||||| ||| || ||||||||||||
Sbjct: 4190 accacaaaacctctgccagttgctcgatactttgca 4155
>gb|F14233.1|F14233 ATTS5155 Gif-SiliqueB Arabidopsis thaliana cDNA clone YBY072 5'
similar to Rice cDNA partial sequence, mRNA sequence
Length = 324
Score = 52.0 bits (26), Expect = 1e-004
Identities = 68/84 (80%)
Strand = Plus / Minus
Query: 57 tcctctgaatgtctggatatgcgcctgctcctcatcccaccaagattcccaactnnnnnc 116
|||||| |||| |||||||||||||| || || |||||||| || |||||||| |
Sbjct: 292 tcctcttaatgnttggatatgcgcctgttcgtcctcccaccacgactcccaactgagctc 233
Query: 117 accctttacaccaactccaccttt 140
|||||||| || |||||||||||
Sbjct: 232 tccctttactcccactccaccttt 209
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 50.1 bits (25), Expect = 5e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 170 agtcctcaacagtcttttgccactcgaaaccagaagggttgaaaa 214
|||| |||||| ||||||||||||| |||||||| || |||||||
Sbjct: 1648720 agtcatcaacaatcttttgccactcaaaaccagacggattgaaaa 1648764
Score = 40.1 bits (20), Expect = 0.46
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 181 gtcttttgccactcgaaaccagaagggttgaa 212
|||||||||||||| || ||||| ||||||||
Sbjct: 1987853 gtcttttgccactcaaacccagatgggttgaa 1987822
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 91 tcccaccaagattcccaact 110
||||||||||||||||||||
Sbjct: 1648641 tcccaccaagattcccaact 1648660
>gb|AF237733.1|AF237733 Arabidopsis thaliana callose synthase 1 catalytic subunit (CalS1)
mRNA, complete cds
Length = 6007
Score = 50.1 bits (25), Expect = 5e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 170 agtcctcaacagtcttttgccactcgaaaccagaagggttgaaaa 214
|||| |||||| ||||||||||||| |||||||| || |||||||
Sbjct: 5158 agtcatcaacaatcttttgccactcaaaaccagacggattgaaaa 5114
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 91 tcccaccaagattcccaact 110
||||||||||||||||||||
Sbjct: 5237 tcccaccaagattcccaact 5218
>emb|AX412747.1| Sequence 511 from Patent WO0222675
Length = 5577
Score = 50.1 bits (25), Expect = 5e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 170 agtcctcaacagtcttttgccactcgaaaccagaagggttgaaaa 214
|||| |||||| ||||||||||||| |||||||| || |||||||
Sbjct: 4873 agtcatcaacaatcttttgccactcaaaaccagacggattgaaaa 4829
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 91 tcccaccaagattcccaact 110
||||||||||||||||||||
Sbjct: 4952 tcccaccaagattcccaact 4933
>emb|AX441264.1| Sequence 18 from Patent EP1209228
Length = 2000
Score = 50.1 bits (25), Expect = 5e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 170 agtcctcaacagtcttttgccactcgaaaccagaagggttgaaaa 214
|||| |||||| ||||||||||||| |||||||| || |||||||
Sbjct: 390 agtcatcaacaatcttttgccactcaaaaccagacggattgaaaa 346
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 91 tcccaccaagattcccaact 110
||||||||||||||||||||
Sbjct: 469 tcccaccaagattcccaact 450
>emb|AX508002.1| Sequence 2697 from Patent WO0216655
Length = 5577
Score = 50.1 bits (25), Expect = 5e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 170 agtcctcaacagtcttttgccactcgaaaccagaagggttgaaaa 214
|||| |||||| ||||||||||||| |||||||| || |||||||
Sbjct: 4873 agtcatcaacaatcttttgccactcaaaaccagacggattgaaaa 4829
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 91 tcccaccaagattcccaact 110
||||||||||||||||||||
Sbjct: 4952 tcccaccaagattcccaact 4933
>dbj|BD181338.1| A stress-responsive promoter
Length = 2000
Score = 50.1 bits (25), Expect = 5e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 170 agtcctcaacagtcttttgccactcgaaaccagaagggttgaaaa 214
|||| |||||| ||||||||||||| |||||||| || |||||||
Sbjct: 390 agtcatcaacaatcttttgccactcaaaaccagacggattgaaaa 346
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 91 tcccaccaagattcccaact 110
||||||||||||||||||||
Sbjct: 469 tcccaccaagattcccaact 450
>gb|AC007153.2| Arabidopsis thaliana chromosome I BAC F3F20 genomic sequence, complete
sequence
Length = 103223
Score = 50.1 bits (25), Expect = 5e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 170 agtcctcaacagtcttttgccactcgaaaccagaagggttgaaaa 214
|||| |||||| ||||||||||||| |||||||| || |||||||
Sbjct: 30368 agtcatcaacaatcttttgccactcaaaaccagacggattgaaaa 30412
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 91 tcccaccaagattcccaact 110
||||||||||||||||||||
Sbjct: 30289 tcccaccaagattcccaact 30308
>gb|AC005106.2|AC005106 Genomic sequence for Arabidopsis thaliana BAC T25N20 from chromosome I,
complete sequence
Length = 84203
Score = 50.1 bits (25), Expect = 5e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 170 agtcctcaacagtcttttgccactcgaaaccagaagggttgaaaa 214
|||| |||||| ||||||||||||| |||||||| || |||||||
Sbjct: 80917 agtcatcaacaatcttttgccactcaaaaccagacggattgaaaa 80961
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 91 tcccaccaagattcccaact 110
||||||||||||||||||||
Sbjct: 80838 tcccaccaagattcccaact 80857
>ref|NM_100436.2| Arabidopsis thaliana CALS1 (CALLOSE SYNTHASE 1); transferase,
transferring glycosyl groups AT1G05570 (CALS1) mRNA,
complete cds
Length = 6022
Score = 50.1 bits (25), Expect = 5e-004
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 170 agtcctcaacagtcttttgccactcgaaaccagaagggttgaaaa 214
|||| |||||| ||||||||||||| |||||||| || |||||||
Sbjct: 5158 agtcatcaacaatcttttgccactcaaaaccagacggattgaaaa 5114
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 91 tcccaccaagattcccaact 110
||||||||||||||||||||
Sbjct: 5237 tcccaccaagattcccaact 5218
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 50.1 bits (25), Expect = 5e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 170 agtcctcaacagtcttttgccactcgaaaccagaagggttgaaaa 214
|||| |||||| ||||||||||||| |||||||| || |||||||
Sbjct: 1648843 agtcatcaacaatcttttgccactcaaaaccagacggattgaaaa 1648887
Score = 40.1 bits (20), Expect = 0.46
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 181 gtcttttgccactcgaaaccagaagggttgaa 212
|||||||||||||| || ||||| ||||||||
Sbjct: 1988006 gtcttttgccactcaaacccagatgggttgaa 1987975
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 91 tcccaccaagattcccaact 110
||||||||||||||||||||
Sbjct: 1648764 tcccaccaagattcccaact 1648783
>gb|AC006922.7| Arabidopsis thaliana chromosome 2 clone T1J8 map g6825, complete
sequence
Length = 134151
Score = 48.1 bits (24), Expect = 0.002
Identities = 61/75 (81%)
Strand = Plus / Plus
Query: 342 cgctttgacaaagtgacttnnagaatagagcctataattttcagcaaacnttatgtgccn 401
|||||| ||||| |||||| |||||| || || ||||| || |||||| ||||||||
Sbjct: 17476 cgctttaacaaaatgacttctagaataaagtctgtaattatcggcaaactttatgtgctg 17535
Query: 402 nacaacaaaacctct 416
|| |||||||||||
Sbjct: 17536 aaccacaaaacctct 17550
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 48.1 bits (24), Expect = 0.002
Identities = 61/75 (81%)
Strand = Plus / Plus
Query: 342 cgctttgacaaagtgacttnnagaatagagcctataattttcagcaaacnttatgtgccn 401
|||||| ||||| |||||| |||||| || || ||||| || |||||| ||||||||
Sbjct: 15463376 cgctttaacaaaatgacttctagaataaagtctgtaattatcggcaaactttatgtgctg 15463435
Query: 402 nacaacaaaacctct 416
|| |||||||||||
Sbjct: 15463436 aaccacaaaacctct 15463450
Score = 46.1 bits (23), Expect = 0.007
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 182 tcttttgccactcgaaaccagaagggttgaa 212
|||||||||||||||||||||| || |||||
Sbjct: 13606105 tcttttgccactcgaaaccagagggattgaa 13606075
>gb|AC006223.4| Arabidopsis thaliana chromosome 2 clone F22D22 map TEn5, complete
sequence
Length = 103194
Score = 46.1 bits (23), Expect = 0.007
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 182 tcttttgccactcgaaaccagaagggttgaa 212
|||||||||||||||||||||| || |||||
Sbjct: 90382 tcttttgccactcgaaaccagagggattgaa 90412
>dbj|AK117353.1| Arabidopsis thaliana At2g31960 mRNA for putative glucan synthase,
complete cds, clone: RAFL16-92-B13
Length = 2390
Score = 46.1 bits (23), Expect = 0.007
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 182 tcttttgccactcgaaaccagaagggttgaa 212
|||||||||||||||||||||| || |||||
Sbjct: 1554 tcttttgccactcgaaaccagagggattgaa 1524
>ref|NM_179847.1| Arabidopsis thaliana ATGSL03 (GLUCAN SYNTHASE-LIKE 3);
1,3-beta-glucan synthase/ transferase, transferring
glycosyl groups AT2G31960 (ATGSL03) mRNA, complete cds
Length = 5880
Score = 46.1 bits (23), Expect = 0.007
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 182 tcttttgccactcgaaaccagaagggttgaa 212
|||||||||||||||||||||| || |||||
Sbjct: 5164 tcttttgccactcgaaaccagagggattgaa 5134
>gb|CL475128.1|CL475128 SAIL_232_C06.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_232_C06.v1, DNA sequence
Length = 913
Score = 40.1 bits (20), Expect = 0.46
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 181 gtcttttgccactcgaaaccagaagggttgaa 212
|||||||||||||| || ||||| ||||||||
Sbjct: 264 gtcttttgccactcaaacccagatgggttgaa 233
>gb|BX836766.1|BX836766 BX836766 Arabidopsis thaliana Flowers and buds Col-0 Arabidopsis
thaliana cDNA clone GSLTFB52ZE04 3PRIM, mRNA sequence
Length = 1060
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 91 tcccaccaagattcccaact 110
||||||||||||||||||||
Sbjct: 771 tcccaccaagattcccaact 790
>gb|AC007592.4|AC007592 Genomic sequence for Arabidopsis thaliana BAC F12K11 from chromosome I,
complete sequence
Length = 93724
Score = 40.1 bits (20), Expect = 0.46
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 181 gtcttttgccactcgaaaccagaagggttgaa 212
|||||||||||||| || ||||| ||||||||
Sbjct: 66003 gtcttttgccactcaaacccagatgggttgaa 66034
>ref|NM_100528.1| Arabidopsis thaliana ATGSL07 (GLUCAN SYNTHASE-LIKE 7);
1,3-beta-glucan synthase/ transferase, transferring
glycosyl groups AT1G06490 (ATGSL07) mRNA, complete cds
Length = 5802
Score = 40.1 bits (20), Expect = 0.46
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 181 gtcttttgccactcgaaaccagaagggttgaa 212
|||||||||||||| || ||||| ||||||||
Sbjct: 5093 gtcttttgccactcaaacccagatgggttgaa 5062
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 167,512
Number of Sequences: 1013581
Number of extensions: 167512
Number of successful extensions: 10903
Number of sequences better than 0.5: 21
Number of HSP's better than 0.5 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10531
Number of HSP's gapped (non-prelim): 369
length of query: 642
length of database: 908,940,872
effective HSP length: 20
effective length of query: 622
effective length of database: 888,669,252
effective search space: 552752274744
effective search space used: 552752274744
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)