BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAC22h02.sg.3.6
(2204 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY084800.1| Arabidopsis thaliana clone 118282 mRNA, comp... 141 6e-031
gb|AY136469.1| Arabidopsis thaliana expressed protein; supp... 139 2e-030
gb|BT006607.1| Arabidopsis thaliana At5g57655 mRNA, complet... 139 2e-030
emb|BX831279.1|CNS09ZCJ Arabidopsis thaliana Full-length cD... 139 2e-030
ref|NM_180872.1| Arabidopsis thaliana xylose isomerase AT5G... 139 2e-030
ref|NM_125147.3| Arabidopsis thaliana xylose isomerase AT5G... 139 2e-030
gb|AY084958.1| Arabidopsis thaliana clone 122798 mRNA, comp... 137 9e-030
gb|H37685.1|H37685 15814 Lambda-PRL2 Arabidopsis thaliana c... 119 2e-024
gb|BE526942.1|BE526942 M66L01STM Arabidopsis developing see... 119 2e-024
gb|BP846065.1|BP846065 BP846065 RAFL21 Arabidopsis thaliana... 98 8e-018
emb|BX833713.1|CNS09Z3Y Arabidopsis thaliana Full-length cD... 98 8e-018
gb|T42965.1|T42965 6228 Lambda-PRL2 Arabidopsis thaliana cD... 94 1e-016
gb|BP815964.1|BP815964 BP815964 RAFL19 Arabidopsis thaliana... 88 8e-015
gb|CB257326.1|CB257326 33-E012738-027-002-A02-T7R MPIZ-ADIS... 86 3e-014
gb|CB185811.1|CB185811 EST01001 Arabidopsis virulent Pseudo... 84 1e-013
dbj|AB011482.1| Arabidopsis thaliana genomic DNA, chromosom... 82 5e-013
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 82 5e-013
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 82 5e-013
gb|BE525067.1|BE525067 M58B5STM Arabidopsis developing seed... 80 2e-012
gb|BP806790.1|BP806790 BP806790 RAFL16 Arabidopsis thaliana... 78 7e-012
dbj|AK221134.1| Arabidopsis thaliana mRNA for xylose isomer... 78 7e-012
gb|CL514595.1|CL514595 SAIL_890_H08.v1 SAIL Collection Arab... 76 3e-011
gb|BP832523.1|BP832523 BP832523 RAFL19 Arabidopsis thaliana... 70 2e-009
emb|BX834102.1|CNS0A1T5 Arabidopsis thaliana Full-length cD... 70 2e-009
gb|BP811038.1|BP811038 BP811038 RAFL16 Arabidopsis thaliana... 62 4e-007
gb|BP809475.1|BP809475 BP809475 RAFL16 Arabidopsis thaliana... 60 2e-006
gb|BP813118.1|BP813118 BP813118 RAFL19 Arabidopsis thaliana... 60 2e-006
gb|BP821965.1|BP821965 BP821965 RAFL19 Arabidopsis thaliana... 58 7e-006
gb|BP811060.1|BP811060 BP811060 RAFL16 Arabidopsis thaliana... 54 1e-004
gb|BP809456.1|BP809456 BP809456 RAFL16 Arabidopsis thaliana... 52 4e-004
gb|BP833245.1|BP833245 BP833245 RAFL19 Arabidopsis thaliana... 52 4e-004
gb|BP859550.1|BP859550 BP859550 RAFL21 Arabidopsis thaliana... 52 4e-004
gb|CB258622.1|CB258622 23-E012735-014-002-N14-T7R MPIZ-ADIS... 50 0.002
gb|AV552093.1|AV552093 AV552093 Arabidopsis thaliana roots ... 50 0.002
gb|BP808126.1|BP808126 BP808126 RAFL16 Arabidopsis thaliana... 50 0.002
gb|BP846858.1|BP846858 BP846858 RAFL21 Arabidopsis thaliana... 50 0.002
gb|AV784040.1|AV784040 AV784040 RAFL5 Arabidopsis thaliana ... 48 0.007
gb|BP861580.1|BP861580 BP861580 RAFL21 Arabidopsis thaliana... 48 0.007
gb|T22346.1|T22346 4354 Lambda-PRL2 Arabidopsis thaliana cD... 46 0.026
gb|AV543392.1|AV543392 AV543392 Arabidopsis thaliana roots ... 46 0.026
gb|BP843314.1|BP843314 BP843314 RAFL21 Arabidopsis thaliana... 46 0.026
gb|BP843918.1|BP843918 BP843918 RAFL21 Arabidopsis thaliana... 46 0.026
gb|BP851388.1|BP851388 BP851388 RAFL21 Arabidopsis thaliana... 46 0.026
gb|BP853903.1|BP853903 BP853903 RAFL21 Arabidopsis thaliana... 46 0.026
gb|BP867295.1|BP867295 BP867295 RAFL21 Arabidopsis thaliana... 46 0.026
gb|N65577.1|N65577 20617 Lambda-PRL2 Arabidopsis thaliana c... 44 0.10
gb|BP808700.1|BP808700 BP808700 RAFL16 Arabidopsis thaliana... 44 0.10
>gb|AY084800.1| Arabidopsis thaliana clone 118282 mRNA, complete sequence
Length = 1838
Score = 141 bits (71), Expect = 6e-031
Identities = 224/275 (81%)
Strand = Plus / Plus
Query: 574 aagtatgagggtccaacaagcaagaaccctcttgcttataagtggtataacaaggaggaa 633
||||||||||| || | || |||||||| |||||||| | |||||||||| || |||
Sbjct: 311 aagtatgagggaccttcgagtaagaacccacttgcttacaggtggtataacgctgaagaa 370
Query: 634 gtgattctcggtaagaagatgaaggattggatgcgcttcagtgttgcgttctggcacacg 693
| |||||| || ||||| |||||||||||| | | |||||||||||||| ||||| ||
Sbjct: 371 gagattcttgggaagaaaatgaaggattggtttagattcagtgttgcgttttggcatact 430
Query: 694 ttccgtggtactggcgctgatcctttcggtgctcctacaaagacttggccttgggaggac 753
|||||||| ||||| | |||||| || |||||| |||| ||| |||||||||||| ||
Sbjct: 431 ttccgtgggactggaggtgatccatttggtgctgctactaagtattggccttgggaagat 490
Query: 754 ggcacaaattctttggccatggctaagagaagaatgagagctcactttgagttcatggag 813
|| || || ||| || | |||||||||||||||||||||||| ||||||||||| || ||
Sbjct: 491 ggtactaactctgtgtctatggctaagagaagaatgagagctaactttgagttcttgaag 550
Query: 814 aagttgggagttgacaaatggtgcttccatgacag 848
|| | |||||||| | ||||| || ||||||||
Sbjct: 551 aaacttggagttgattagtggtgttttcatgacag 585
Score = 89.7 bits (45), Expect = 2e-015
Identities = 213/269 (79%)
Strand = Plus / Plus
Query: 949 ccattgtggggtactgcacagctctttatgcatcctcgttacatgcatggcgctgctact 1008
||||||||||| || || ||||| || ||||||||||||||||||| || | || ||
Sbjct: 686 ccattgtggggaacagctcagcttttcttgcatcctcgttacatgcacggaggagcgacc 745
Query: 1009 agcccagaggttaaagtatatgcttatgcggctgcacaagttaagaaagctttggaggtc 1068
||| | || ||| ||| |||||||| || ||||| || || |||||||| |||||||
Sbjct: 746 agctctgaagttggagtgtatgcttacgctgctgctcaggtgaagaaagccatggaggta 805
Query: 1069 actcactacctaggtggtgaaaactatgtgttctggggtggaagagagggttaccaaact 1128
|| || ||| |||||||||||||||| || || |||||||| | || ||||| || ||
Sbjct: 806 acacattacttaggtggtgaaaactacgttttttggggtggtcgtgaaggttatcagaca 865
Query: 1129 cttctgaatactgatatgaagagagaacttgaccatctggctaactttcttcaagctgct 1188
|| |||| ||||||||| ||||| ||||| ||||| || | || || ||||||||
Sbjct: 866 ctcttgaacactgatatgggaagagagcttgatcatctagccaggttctttgaagctgct 925
Query: 1189 gttgactacaagaagaagattggattcaa 1217
|||| |||||||||||||||||||||||
Sbjct: 926 gttgcttacaagaagaagattggattcaa 954
Score = 50.1 bits (25), Expect = 0.002
Identities = 106/133 (79%)
Strand = Plus / Plus
Query: 1340 ttgagtgcaaccatgctactctatctggacacagctgccatcatgaattggagactgcac 1399
||||||| |||||||| || || ||||| |||| || ||||| || | || ||||||
Sbjct: 1154 ttgagtgtaaccatgccacgctctctggtcacacttgtcatcacgagcttgaaactgcaa 1213
Query: 1400 ggattaatgggctgcttggaaatatcgatgcaaacactggtgatcctcaagttggttggg 1459
| |||||||| | ||||| || || |||||||||||||| ||| ||||| ||| ||||
Sbjct: 1214 gaattaatggtttacttggcaacattgatgcaaacactggcgatgctcaaactggatggg 1273
Query: 1460 acacagatcagtt 1472
| |||||||||||
Sbjct: 1274 atacagatcagtt 1286
>gb|AY136469.1| Arabidopsis thaliana expressed protein; supported by full length
cDNA: Ceres: 122798 (At5g57655) mRNA, complete cds
Length = 1823
Score = 139 bits (70), Expect = 2e-030
Identities = 193/234 (82%)
Strand = Plus / Plus
Query: 574 aagtatgagggtccaacaagcaagaaccctcttgcttataagtggtataacaaggaggaa 633
||||||||||| || | || |||||||| |||||||| | |||||||||| || |||
Sbjct: 424 aagtatgagggaccttcgagtaagaacccacttgcttacaggtggtataacgctgaagaa 483
Query: 634 gtgattctcggtaagaagatgaaggattggatgcgcttcagtgttgcgttctggcacacg 693
| |||||| || ||||| |||||||||||| | | |||||||||||||| ||||| ||
Sbjct: 484 gagattcttgggaagaaaatgaaggattggtttagattcagtgttgcgttttggcatact 543
Query: 694 ttccgtggtactggcgctgatcctttcggtgctcctacaaagacttggccttgggaggac 753
|||||||| ||||| | |||||| || |||||| |||| ||| |||||||||||| ||
Sbjct: 544 ttccgtgggactggaggtgatccatttggtgctgctactaagtattggccttgggaagat 603
Query: 754 ggcacaaattctttggccatggctaagagaagaatgagagctcactttgagttc 807
|| || || ||| || | |||||||||||||||||||||||| |||||||||||
Sbjct: 604 ggtactaactctgtgtctatggctaagagaagaatgagagctaactttgagttc 657
Score = 101 bits (51), Expect = 5e-019
Identities = 261/331 (78%)
Strand = Plus / Plus
Query: 949 ccattgtggggtactgcacagctctttatgcatcctcgttacatgcatggcgctgctact 1008
||||||||||| || || ||||| || ||||||||||||| ||||| || | || ||
Sbjct: 799 ccattgtggggaacagctcagcttttcttgcatcctcgttatatgcacggaggagcgacc 858
Query: 1009 agcccagaggttaaagtatatgcttatgcggctgcacaagttaagaaagctttggaggtc 1068
||| | || ||| ||| |||||||| || ||||| || || |||||||| |||||||
Sbjct: 859 agctctgaagttggagtgtatgcttacgctgctgctcaggtgaagaaagccatggaggta 918
Query: 1069 actcactacctaggtggtgaaaactatgtgttctggggtggaagagagggttaccaaact 1128
|| || ||| |||||||||||||||| || || |||||||| | || ||||| || ||
Sbjct: 919 acacattacttaggtggtgaaaactacgttttttggggtggtcgtgaaggttatcagaca 978
Query: 1129 cttctgaatactgatatgaagagagaacttgaccatctggctaactttcttcaagctgct 1188
|| |||| ||||||||| ||||| ||||| ||||| || | || || ||||||||
Sbjct: 979 ctcttgaacactgatatgggaagagagcttgatcatctagccaggttctttgaagctgct 1038
Query: 1189 gttgactacaagaagaagattggattcaacggaacactattgatagagcctaaaccacag 1248
|||| ||||||||||||||||||||||| || || || || || ||||| || || ||
Sbjct: 1039 gttgcttacaagaagaagattggattcaaaggcacgcttttaatcgagcccaagcctcaa 1098
Query: 1249 gaaccaacaaaacaccagtatgactgggatg 1279
||||| || || |||||||||||||||||||
Sbjct: 1099 gaacccaccaagcaccagtatgactgggatg 1129
Score = 50.1 bits (25), Expect = 0.002
Identities = 106/133 (79%)
Strand = Plus / Plus
Query: 1340 ttgagtgcaaccatgctactctatctggacacagctgccatcatgaattggagactgcac 1399
||||||| |||||||| || || ||||| |||| || ||||| || | || ||||||
Sbjct: 1190 ttgagtgtaaccatgccacgctctctggtcacacttgtcatcacgagcttgaaactgcaa 1249
Query: 1400 ggattaatgggctgcttggaaatatcgatgcaaacactggtgatcctcaagttggttggg 1459
| |||||||| | ||||| || || |||||||||||||| ||| ||||| ||| ||||
Sbjct: 1250 gaattaatggtttacttggcaacattgatgcaaacactggcgatgctcaaactggatggg 1309
Query: 1460 acacagatcagtt 1472
| |||||||||||
Sbjct: 1310 atacagatcagtt 1322
>gb|BT006607.1| Arabidopsis thaliana At5g57655 mRNA, complete cds
Length = 1434
Score = 139 bits (70), Expect = 2e-030
Identities = 193/234 (82%)
Strand = Plus / Plus
Query: 574 aagtatgagggtccaacaagcaagaaccctcttgcttataagtggtataacaaggaggaa 633
||||||||||| || | || |||||||| |||||||| | |||||||||| || |||
Sbjct: 157 aagtatgagggaccttcgagtaagaacccacttgcttacaggtggtataacgctgaagaa 216
Query: 634 gtgattctcggtaagaagatgaaggattggatgcgcttcagtgttgcgttctggcacacg 693
| |||||| || ||||| |||||||||||| | | |||||||||||||| ||||| ||
Sbjct: 217 gagattcttgggaagaaaatgaaggattggtttagattcagtgttgcgttttggcatact 276
Query: 694 ttccgtggtactggcgctgatcctttcggtgctcctacaaagacttggccttgggaggac 753
|||||||| ||||| | |||||| || |||||| |||| ||| |||||||||||| ||
Sbjct: 277 ttccgtgggactggaggtgatccatttggtgctgctactaagtattggccttgggaagat 336
Query: 754 ggcacaaattctttggccatggctaagagaagaatgagagctcactttgagttc 807
|| || || ||| || | |||||||||||||||||||||||| |||||||||||
Sbjct: 337 ggtactaactctgtgtctatggctaagagaagaatgagagctaactttgagttc 390
Score = 101 bits (51), Expect = 5e-019
Identities = 261/331 (78%)
Strand = Plus / Plus
Query: 949 ccattgtggggtactgcacagctctttatgcatcctcgttacatgcatggcgctgctact 1008
||||||||||| || || ||||| || ||||||||||||| ||||| || | || ||
Sbjct: 532 ccattgtggggaacagctcagcttttcttgcatcctcgttatatgcacggaggagcgacc 591
Query: 1009 agcccagaggttaaagtatatgcttatgcggctgcacaagttaagaaagctttggaggtc 1068
||| | || ||| ||| |||||||| || ||||| || || |||||||| |||||||
Sbjct: 592 agctctgaagttggagtgtatgcttacgctgctgctcaggtgaagaaagccatggaggta 651
Query: 1069 actcactacctaggtggtgaaaactatgtgttctggggtggaagagagggttaccaaact 1128
|| || ||| |||||||||||||||| || || |||||||| | || ||||| || ||
Sbjct: 652 acacattacttaggtggtgaaaactacgttttttggggtggtcgtgaaggttatcagaca 711
Query: 1129 cttctgaatactgatatgaagagagaacttgaccatctggctaactttcttcaagctgct 1188
|| |||| ||||||||| ||||| ||||| ||||| || | || || ||||||||
Sbjct: 712 ctcttgaacactgatatgggaagagagcttgatcatctagccaggttctttgaagctgct 771
Query: 1189 gttgactacaagaagaagattggattcaacggaacactattgatagagcctaaaccacag 1248
|||| ||||||||||||||||||||||| || || || || || ||||| || || ||
Sbjct: 772 gttgcttacaagaagaagattggattcaaaggcacgcttttaatcgagcccaagcctcaa 831
Query: 1249 gaaccaacaaaacaccagtatgactgggatg 1279
||||| || || |||||||||||||||||||
Sbjct: 832 gaacccaccaagcaccagtatgactgggatg 862
Score = 50.1 bits (25), Expect = 0.002
Identities = 106/133 (79%)
Strand = Plus / Plus
Query: 1340 ttgagtgcaaccatgctactctatctggacacagctgccatcatgaattggagactgcac 1399
||||||| |||||||| || || ||||| |||| || ||||| || | || ||||||
Sbjct: 923 ttgagtgtaaccatgccacgctctctggtcacacttgtcatcacgagcttgaaactgcaa 982
Query: 1400 ggattaatgggctgcttggaaatatcgatgcaaacactggtgatcctcaagttggttggg 1459
| |||||||| | ||||| || || |||||||||||||| ||| ||||| ||| ||||
Sbjct: 983 gaattaatggtttacttggcaacattgatgcaaacactggcgatgctcaaactggatggg 1042
Query: 1460 acacagatcagtt 1472
| |||||||||||
Sbjct: 1043 atacagatcagtt 1055
>emb|BX831279.1|CNS09ZCJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS74ZE05 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1649
Score = 139 bits (70), Expect = 2e-030
Identities = 193/234 (82%)
Strand = Plus / Plus
Query: 574 aagtatgagggtccaacaagcaagaaccctcttgcttataagtggtataacaaggaggaa 633
||||||||||| || | || |||||||| |||||||| | |||||||||| || |||
Sbjct: 245 aagtatgagggaccttcgagtaagaacccacttgcttacaggtggtataacgctgaagaa 304
Query: 634 gtgattctcggtaagaagatgaaggattggatgcgcttcagtgttgcgttctggcacacg 693
| |||||| || ||||| |||||||||||| | | |||||||||||||| ||||| ||
Sbjct: 305 gagattcttgggaagaaaatgaaggattggtttagattcagtgttgcgttttggcatact 364
Query: 694 ttccgtggtactggcgctgatcctttcggtgctcctacaaagacttggccttgggaggac 753
|||||||| ||||| | |||||| || |||||| |||| ||| |||||||||||| ||
Sbjct: 365 ttccgtgggactggaggtgatccatttggtgctgctactaagtattggccttgggaagat 424
Query: 754 ggcacaaattctttggccatggctaagagaagaatgagagctcactttgagttc 807
|| || || ||| || | |||||||||||||||||||||||| |||||||||||
Sbjct: 425 ggtactaactctgtgtctatggctaagagaagaatgagagctaactttgagttc 478
Score = 93.7 bits (47), Expect = 1e-016
Identities = 260/331 (78%)
Strand = Plus / Plus
Query: 949 ccattgtggggtactgcacagctctttatgcatcctcgttacatgcatggcgctgctact 1008
||||||||||| || || ||||| || ||||||||||||| ||||| || | || ||
Sbjct: 620 ccattgtggggaacagctcagcttttcttgcatcctcgttatatgcacggaggagcgacc 679
Query: 1009 agcccagaggttaaagtatatgcttatgcggctgcacaagttaagaaagctttggaggtc 1068
||| | || ||| ||| |||||||| || ||||| || || |||||||| |||||||
Sbjct: 680 agctctgaagttggagtgtatgcttacgctgctgctcaggtgaagaaagccatggaggta 739
Query: 1069 actcactacctaggtggtgaaaactatgtgttctggggtggaagagagggttaccaaact 1128
|| || ||| |||||||||||||||| || || |||||||| | || ||||| || ||
Sbjct: 740 acacattacttaggtggtgaaaactacgttttttggggtggtcgtgaaggttatcagaca 799
Query: 1129 cttctgaatactgatatgaagagagaacttgaccatctggctaactttcttcaagctgct 1188
| |||| ||||||||| ||||| ||||| ||||| || | || || ||||||||
Sbjct: 800 ttcttgaacactgatatgggaagagagcttgatcatctagccaggttctttgaagctgct 859
Query: 1189 gttgactacaagaagaagattggattcaacggaacactattgatagagcctaaaccacag 1248
|||| ||||||||||||||||||||||| || || || || || ||||| || || ||
Sbjct: 860 gttgcttacaagaagaagattggattcaaaggcacgcttttaatcgagcccaagcctcaa 919
Query: 1249 gaaccaacaaaacaccagtatgactgggatg 1279
||||| || || |||||||||||||||||||
Sbjct: 920 gaacccaccaagcaccagtatgactgggatg 950
Score = 42.1 bits (21), Expect = 0.40
Identities = 105/133 (78%)
Strand = Plus / Plus
Query: 1340 ttgagtgcaaccatgctactctatctggacacagctgccatcatgaattggagactgcac 1399
||||||| |||||||| || || ||||| |||| || ||||| || | || ||||||
Sbjct: 1011 ttgagtgtaaccatgccacgctctctggtcacacttgtcatcacgagcttgaaactgcaa 1070
Query: 1400 ggattaatgggctgcttggaaatatcgatgcaaacactggtgatcctcaagttggttggg 1459
| |||||||| | ||||| || || |||||||| ||||| ||| ||||| ||| ||||
Sbjct: 1071 gaattaatggtttacttggcaacattgatgcaaatactggcgatgctcaaactggatggg 1130
Query: 1460 acacagatcagtt 1472
| |||||||||||
Sbjct: 1131 atacagatcagtt 1143
>ref|NM_180872.1| Arabidopsis thaliana xylose isomerase AT5G57655 transcript variant
AT5G57655.1 mRNA, complete cds
Length = 1863
Score = 139 bits (70), Expect = 2e-030
Identities = 193/234 (82%)
Strand = Plus / Plus
Query: 574 aagtatgagggtccaacaagcaagaaccctcttgcttataagtggtataacaaggaggaa 633
||||||||||| || | || |||||||| |||||||| | |||||||||| || |||
Sbjct: 311 aagtatgagggaccttcgagtaagaacccacttgcttacaggtggtataacgctgaagaa 370
Query: 634 gtgattctcggtaagaagatgaaggattggatgcgcttcagtgttgcgttctggcacacg 693
| |||||| || ||||| |||||||||||| | | |||||||||||||| ||||| ||
Sbjct: 371 gagattcttgggaagaaaatgaaggattggtttagattcagtgttgcgttttggcatact 430
Query: 694 ttccgtggtactggcgctgatcctttcggtgctcctacaaagacttggccttgggaggac 753
|||||||| ||||| | |||||| || |||||| |||| ||| |||||||||||| ||
Sbjct: 431 ttccgtgggactggaggtgatccatttggtgctgctactaagtattggccttgggaagat 490
Query: 754 ggcacaaattctttggccatggctaagagaagaatgagagctcactttgagttc 807
|| || || ||| || | |||||||||||||||||||||||| |||||||||||
Sbjct: 491 ggtactaactctgtgtctatggctaagagaagaatgagagctaactttgagttc 544
Score = 81.8 bits (41), Expect = 5e-013
Identities = 212/269 (78%)
Strand = Plus / Plus
Query: 949 ccattgtggggtactgcacagctctttatgcatcctcgttacatgcatggcgctgctact 1008
||||||||||| || || ||||| || ||||||||||||| ||||| || | || ||
Sbjct: 686 ccattgtggggaacagctcagcttttcttgcatcctcgttatatgcacggaggagcgacc 745
Query: 1009 agcccagaggttaaagtatatgcttatgcggctgcacaagttaagaaagctttggaggtc 1068
||| | || ||| ||| |||||||| || ||||| || || |||||||| |||||||
Sbjct: 746 agctctgaagttggagtgtatgcttacgctgctgctcaggtgaagaaagccatggaggta 805
Query: 1069 actcactacctaggtggtgaaaactatgtgttctggggtggaagagagggttaccaaact 1128
|| || ||| |||||||||||||||| || || |||||||| | || ||||| || ||
Sbjct: 806 acacattacttaggtggtgaaaactacgttttttggggtggtcgtgaaggttatcagaca 865
Query: 1129 cttctgaatactgatatgaagagagaacttgaccatctggctaactttcttcaagctgct 1188
|| |||| ||||||||| ||||| ||||| ||||| || | || || ||||||||
Sbjct: 866 ctcttgaacactgatatgggaagagagcttgatcatctagccaggttctttgaagctgct 925
Query: 1189 gttgactacaagaagaagattggattcaa 1217
|||| |||||||||||||||||||||||
Sbjct: 926 gttgcttacaagaagaagattggattcaa 954
Score = 50.1 bits (25), Expect = 0.002
Identities = 106/133 (79%)
Strand = Plus / Plus
Query: 1340 ttgagtgcaaccatgctactctatctggacacagctgccatcatgaattggagactgcac 1399
||||||| |||||||| || || ||||| |||| || ||||| || | || ||||||
Sbjct: 1154 ttgagtgtaaccatgccacgctctctggtcacacttgtcatcacgagcttgaaactgcaa 1213
Query: 1400 ggattaatgggctgcttggaaatatcgatgcaaacactggtgatcctcaagttggttggg 1459
| |||||||| | ||||| || || |||||||||||||| ||| ||||| ||| ||||
Sbjct: 1214 gaattaatggtttacttggcaacattgatgcaaacactggcgatgctcaaactggatggg 1273
Query: 1460 acacagatcagtt 1472
| |||||||||||
Sbjct: 1274 atacagatcagtt 1286
>ref|NM_125147.3| Arabidopsis thaliana xylose isomerase AT5G57655 transcript variant
AT5G57655.2 mRNA, complete cds
Length = 1902
Score = 139 bits (70), Expect = 2e-030
Identities = 193/234 (82%)
Strand = Plus / Plus
Query: 574 aagtatgagggtccaacaagcaagaaccctcttgcttataagtggtataacaaggaggaa 633
||||||||||| || | || |||||||| |||||||| | |||||||||| || |||
Sbjct: 426 aagtatgagggaccttcgagtaagaacccacttgcttacaggtggtataacgctgaagaa 485
Query: 634 gtgattctcggtaagaagatgaaggattggatgcgcttcagtgttgcgttctggcacacg 693
| |||||| || ||||| |||||||||||| | | |||||||||||||| ||||| ||
Sbjct: 486 gagattcttgggaagaaaatgaaggattggtttagattcagtgttgcgttttggcatact 545
Query: 694 ttccgtggtactggcgctgatcctttcggtgctcctacaaagacttggccttgggaggac 753
|||||||| ||||| | |||||| || |||||| |||| ||| |||||||||||| ||
Sbjct: 546 ttccgtgggactggaggtgatccatttggtgctgctactaagtattggccttgggaagat 605
Query: 754 ggcacaaattctttggccatggctaagagaagaatgagagctcactttgagttc 807
|| || || ||| || | |||||||||||||||||||||||| |||||||||||
Sbjct: 606 ggtactaactctgtgtctatggctaagagaagaatgagagctaactttgagttc 659
Score = 101 bits (51), Expect = 5e-019
Identities = 261/331 (78%)
Strand = Plus / Plus
Query: 949 ccattgtggggtactgcacagctctttatgcatcctcgttacatgcatggcgctgctact 1008
||||||||||| || || ||||| || ||||||||||||| ||||| || | || ||
Sbjct: 801 ccattgtggggaacagctcagcttttcttgcatcctcgttatatgcacggaggagcgacc 860
Query: 1009 agcccagaggttaaagtatatgcttatgcggctgcacaagttaagaaagctttggaggtc 1068
||| | || ||| ||| |||||||| || ||||| || || |||||||| |||||||
Sbjct: 861 agctctgaagttggagtgtatgcttacgctgctgctcaggtgaagaaagccatggaggta 920
Query: 1069 actcactacctaggtggtgaaaactatgtgttctggggtggaagagagggttaccaaact 1128
|| || ||| |||||||||||||||| || || |||||||| | || ||||| || ||
Sbjct: 921 acacattacttaggtggtgaaaactacgttttttggggtggtcgtgaaggttatcagaca 980
Query: 1129 cttctgaatactgatatgaagagagaacttgaccatctggctaactttcttcaagctgct 1188
|| |||| ||||||||| ||||| ||||| ||||| || | || || ||||||||
Sbjct: 981 ctcttgaacactgatatgggaagagagcttgatcatctagccaggttctttgaagctgct 1040
Query: 1189 gttgactacaagaagaagattggattcaacggaacactattgatagagcctaaaccacag 1248
|||| ||||||||||||||||||||||| || || || || || ||||| || || ||
Sbjct: 1041 gttgcttacaagaagaagattggattcaaaggcacgcttttaatcgagcccaagcctcaa 1100
Query: 1249 gaaccaacaaaacaccagtatgactgggatg 1279
||||| || || |||||||||||||||||||
Sbjct: 1101 gaacccaccaagcaccagtatgactgggatg 1131
Score = 50.1 bits (25), Expect = 0.002
Identities = 106/133 (79%)
Strand = Plus / Plus
Query: 1340 ttgagtgcaaccatgctactctatctggacacagctgccatcatgaattggagactgcac 1399
||||||| |||||||| || || ||||| |||| || ||||| || | || ||||||
Sbjct: 1192 ttgagtgtaaccatgccacgctctctggtcacacttgtcatcacgagcttgaaactgcaa 1251
Query: 1400 ggattaatgggctgcttggaaatatcgatgcaaacactggtgatcctcaagttggttggg 1459
| |||||||| | ||||| || || |||||||||||||| ||| ||||| ||| ||||
Sbjct: 1252 gaattaatggtttacttggcaacattgatgcaaacactggcgatgctcaaactggatggg 1311
Query: 1460 acacagatcagtt 1472
| |||||||||||
Sbjct: 1312 atacagatcagtt 1324
>gb|AY084958.1| Arabidopsis thaliana clone 122798 mRNA, complete sequence
Length = 1649
Score = 137 bits (69), Expect = 9e-030
Identities = 177/213 (83%)
Strand = Plus / Plus
Query: 595 aagaaccctcttgcttataagtggtataacaaggaggaagtgattctcggtaagaagatg 654
|||||||| |||||||| | |||||||||| || |||| |||||| || ||||| |||
Sbjct: 195 aagaacccacttgcttacaggtggtataacgctgaagaagagattcttgggaagaaaatg 254
Query: 655 aaggattggatgcgcttcagtgttgcgttctggcacacgttccgtggtactggcgctgat 714
||||||||| | | |||||||||||||| ||||| || |||||||| ||||| | ||||
Sbjct: 255 aaggattggtttagattcagtgttgcgttttggcatactttccgtgggactggaggtgat 314
Query: 715 cctttcggtgctcctacaaagacttggccttgggaggacggcacaaattctttggccatg 774
|| || |||||| |||| ||| |||||||||||| || || || || ||| || | |||
Sbjct: 315 ccatttggtgctgctactaagtattggccttgggaagatggtactaactctgtgtctatg 374
Query: 775 gctaagagaagaatgagagctcactttgagttc 807
||||||||||||||||||||| |||||||||||
Sbjct: 375 gctaagagaagaatgagagctaactttgagttc 407
Score = 105 bits (53), Expect = 3e-020
Identities = 261/331 (78%)
Strand = Plus / Plus
Query: 949 ccattgtggggtactgcacagctctttatgcatcctcgttacatgcatggcgctgctact 1008
||||||||||| || || ||||| || ||||||||||||||||||| || | || ||
Sbjct: 549 ccattgtggggaacagctcagcttttcttgcatcctcgttacatgcacggaggagcgacc 608
Query: 1009 agcccagaggttaaagtatatgcttatgcggctgcacaagttaagaaagctttggaggtc 1068
||| | || ||| ||| |||||||| || ||||| || || |||||||| |||||||
Sbjct: 609 agctctgaagttggagtgtatgcttacgctgctgctcaggtgaagaaagccatggaggta 668
Query: 1069 actcactacctaggtggtgaaaactatgtgttctggggtggaagagagggttaccaaact 1128
|| || ||| |||||||||||||||| || || |||||||| | || ||||| || ||
Sbjct: 669 acacattacttaggtggtgaaaactacgttttttggggtggtcgtgaaggttatcagaca 728
Query: 1129 cttctgaatactgatatgaagagagaacttgaccatctggctaactttcttcaagctgct 1188
|| |||| ||||||||| ||||| ||||| | ||| || | || || ||||||||
Sbjct: 729 ctcttgaacactgatatgggaagagagcttgatcmtctagccaggttctttgaagctgct 788
Query: 1189 gttgactacaagaagaagattggattcaacggaacactattgatagagcctaaaccacag 1248
|||| ||||||||||||||||||||||| || || || || || ||||| || || ||
Sbjct: 789 gttgcttacaagaagaagattggattcaaaggcacgcttttaatcgagcccaagcctcaa 848
Query: 1249 gaaccaacaaaacaccagtatgactgggatg 1279
||||| || || |||||||||||||||||||
Sbjct: 849 gaacccaccaagcaccagtatgactgggatg 879
Score = 46.1 bits (23), Expect = 0.026
Identities = 105/133 (78%)
Strand = Plus / Plus
Query: 1340 ttgagtgcaaccatgctactctatctggacacagctgccatcatgaattggagactgcac 1399
||||||| |||||||| || || ||||| |||| || ||||| || | || ||||||
Sbjct: 940 ttgagtgtaaccatgccacgctctctggtcacacttgtcatcacgagcttgaaactgcaa 999
Query: 1400 ggattaatgggctgcttggaaatatcgatgcaaacactggtgatcctcaagttggttggg 1459
| |||||||| | ||||| || || |||||||||||||| ||| |||| ||| ||||
Sbjct: 1000 gaattaatggtttacttggcaacattgatgcaaacactggcgatgctcawactggatggg 1059
Query: 1460 acacagatcagtt 1472
| |||||||||||
Sbjct: 1060 atacagatcagtt 1072
>gb|H37685.1|H37685 15814 Lambda-PRL2 Arabidopsis thaliana cDNA clone 185B8T7, mRNA
sequence
Length = 535
Score = 119 bits (60), Expect = 2e-024
Identities = 192/235 (81%), Gaps = 1/235 (0%)
Strand = Plus / Plus
Query: 574 aagtatgagggtccaacaagcaagaaccctcttgcttataagtggtataacaaggaggaa 633
||||||||||| || | || |||||||| |||||||| | |||||||||| || |||
Sbjct: 84 aagtatgagggaccttcgagtaagaacccacttgcttacaggtggtataacgctgaagaa 143
Query: 634 gtgattctcggtaagaagatgaaggattggatgcgcttcagtgttgcgttctggcacacg 693
| |||||| || ||||| |||||||||||| | | |||||||||||||| ||||| ||
Sbjct: 144 gagattcttgggaagaaaatgaaggattggtttagattcagtgttgcgttttggcatact 203
Query: 694 ttccgtggtactggcgctgatcctttcggtgctcctacaaagacttggccttgggaggac 753
|||| ||| ||||| | |||||| || |||||| |||| ||| |||||||||||| ||
Sbjct: 204 ttccntgggactggaggtgatccctttggtgctgctactaagtattggccttgggaagat 263
Query: 754 ggcacaaattctttggccatggctaagagaagaatg-agagctcactttgagttc 807
|| || || ||| || | |||||||||||||||||| |||||| |||||||||||
Sbjct: 264 ggtactaactctgtgtctatggctaagagaagaatgaagagctaactttgagttc 318
>gb|BE526942.1|BE526942 M66L01STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone 600035606R1 5', mRNA sequence
Length = 257
Score = 119 bits (60), Expect = 2e-024
Identities = 144/172 (83%)
Strand = Plus / Plus
Query: 636 gattctcggtaagaagatgaaggattggatgcgcttcagtgttgcgttctggcacacgtt 695
|||||| || ||||| |||||||||||| | | |||||||||||||| ||||| || ||
Sbjct: 30 gattcttgggaagaaaatgaaggattggtttagattcagtgttgcgttttggcatacttt 89
Query: 696 ccgtggtactggcgctgatcctttcggtgctcctacaaagacttggccttgggaggacgg 755
|||||| ||||| | |||||| || |||||| |||| ||| |||||||||||| || ||
Sbjct: 90 ccgtgggactggaggtgatccatttggtgctgctactaagtattggccttgggaagatgg 149
Query: 756 cacaaattctttggccatggctaagagaagaatgagagctcactttgagttc 807
|| || ||| || | |||||||||||||||||||||||| |||||||||||
Sbjct: 150 tactaactctgtgtctatggctaagagaagaatgagagctaactttgagttc 201
>gb|BP846065.1|BP846065 BP846065 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-95-K24 5',
mRNA sequence
Length = 399
Score = 97.6 bits (49), Expect = 8e-018
Identities = 178/221 (80%)
Strand = Plus / Plus
Query: 574 aagtatgagggtccaacaagcaagaaccctcttgcttataagtggtataacaaggaggaa 633
||||||||||| || | || |||||||| |||||||| | |||||||||| || |||
Sbjct: 179 aagtatgagggaccttcgagtaagaacccacttgcttacaggtggtataacgctgaagaa 238
Query: 634 gtgattctcggtaagaagatgaaggattggatgcgcttcagtgttgcgttctggcacacg 693
| |||||| || ||||| |||||||||||| | | |||||||||||||| |||| ||
Sbjct: 239 gagattcttgggaagaaaatgaaggattggtttagattcagtgttgcgtttgggcatact 298
Query: 694 ttccgtggtactggcgctgatcctttcggtgctcctacaaagacttggccttgggaggac 753
|||||||| ||||| | |||||| || |||||| |||| ||| | ||||| |||| ||
Sbjct: 299 ttccgtgggactggaggtgatccatttggtgctgctactaagtatgggcctggggaagat 358
Query: 754 ggcacaaattctttggccatggctaagagaagaatgagagc 794
|| || || ||| || | |||||||||||||||||||||||
Sbjct: 359 ggtactaactctgtgtctatggctaagagaagaatgagagc 399
>emb|BX833713.1|CNS09Z3Y Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL72ZD05 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 966
Score = 97.6 bits (49), Expect = 8e-018
Identities = 202/253 (79%)
Strand = Plus / Plus
Query: 1027 tatgcttatgcggctgcacaagttaagaaagctttggaggtcactcactacctaggtggt 1086
|||||||| || ||||| || || |||||||| ||||||| || || ||| ||||||||
Sbjct: 15 tatgcttacgctgctgctcaggtgaagaaagccatggaggtaacacattacttaggtggt 74
Query: 1087 gaaaactatgtgttctggggtggaagagagggttaccaaactcttctgaatactgatatg 1146
|||||||| || || |||||||| | || ||||| || || || |||| |||||||||
Sbjct: 75 gaaaactacgttttttggggtggtcgtgaaggttatcagacactcttgaacactgatatg 134
Query: 1147 aagagagaacttgaccatctggctaactttcttcaagctgctgttgactacaagaagaag 1206
||||| ||||| ||||| || | || || |||||||||||| ||||||||||||
Sbjct: 135 ggaagagagcttgatcatctagccaggttctttgaagctgctgttgcttacaagaagaag 194
Query: 1207 attggattcaacggaacactattgatagagcctaaaccacaggaaccaacaaaacaccag 1266
||||||||||| || || || || || ||||| || || || ||||| || || ||||||
Sbjct: 195 attggattcaaaggcacgcttttaatcgagcccaagcctcaagaacccaccaagcaccag 254
Query: 1267 tatgactgggatg 1279
|||||||||||||
Sbjct: 255 tatgactgggatg 267
Score = 50.1 bits (25), Expect = 0.002
Identities = 106/133 (79%)
Strand = Plus / Plus
Query: 1340 ttgagtgcaaccatgctactctatctggacacagctgccatcatgaattggagactgcac 1399
||||||| |||||||| || || ||||| |||| || ||||| || | || ||||||
Sbjct: 328 ttgagtgtaaccatgccacgctctctggtcacacttgtcatcacgagcttgaaactgcaa 387
Query: 1400 ggattaatgggctgcttggaaatatcgatgcaaacactggtgatcctcaagttggttggg 1459
| |||||||| | ||||| || || |||||||||||||| ||| ||||| ||| ||||
Sbjct: 388 gaattaatggtttacttggcaacattgatgcaaacactggcgatgctcaaactggatggg 447
Query: 1460 acacagatcagtt 1472
| |||||||||||
Sbjct: 448 atacagatcagtt 460
>gb|T42965.1|T42965 6228 Lambda-PRL2 Arabidopsis thaliana cDNA clone 119I20T7, mRNA
sequence
Length = 436
Score = 93.7 bits (47), Expect = 1e-016
Identities = 255/325 (78%)
Strand = Plus / Plus
Query: 949 ccattgtggggtactgcacagctctttatgcatcctcgttacatgcatggcgctgctact 1008
||||||||||| || || ||||| || ||||||||||||| ||||| || | || ||
Sbjct: 12 ccattgtggggaacagctcagcttttnntgcatcctcgttatatgcacggaggagcgacc 71
Query: 1009 agcccagaggttaaagtatatgcttatgcggctgcacaagttaagaaagctttggaggtc 1068
||| | || ||| ||| |||||||| || ||||| || || |||||||| |||||||
Sbjct: 72 agctctgaagttggagtgtatgcttacgctgctgctcaggtgaagaaagccatggaggta 131
Query: 1069 actcactacctaggtggtgaaaactatgtgttctggggtggaagagagggttaccaaact 1128
|| || ||| |||||||||||||||| || || |||||||| | || ||||| || ||
Sbjct: 132 acacattacttaggtggtgaaaactacgttttttggggtggtcgtgaaggttatcagaca 191
Query: 1129 cttctgaatactgatatgaagagagaacttgaccatctggctaactttcttcaagctgct 1188
|| |||| ||||||||| ||||| ||||| ||||| || | || || ||||||||
Sbjct: 192 ctcttgaacactgatatgggaagagagcttgatcatctagccaggttctttgaagctgct 251
Query: 1189 gttgactacaagaagaagattggattcaacggaacactattgatagagcctaaaccacag 1248
|||| ||||||||||||||||||||||| || || || || || ||||| || || ||
Sbjct: 252 gttgcttacaagaagaagattggattcaaaggcacgcttttaatcgagcccaagcctcaa 311
Query: 1249 gaaccaacaaaacaccagtatgact 1273
||||| || || |||||||||||||
Sbjct: 312 gaacccaccaagcaccagtatgact 336
>gb|BP815964.1|BP815964 BP815964 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-40-H01 5',
mRNA sequence
Length = 416
Score = 87.7 bits (44), Expect = 8e-015
Identities = 261/332 (78%), Gaps = 1/332 (0%)
Strand = Plus / Plus
Query: 949 ccattgtggggtactgcacagctctttatgcatcctcgttacatgcatggcgctgctact 1008
||||||||||| || || ||||| || ||||||||||||| ||||| || | || ||
Sbjct: 31 ccattgtggggaacagctcagcttttcttgcatcctcgttatatgcacggaggagcgacc 90
Query: 1009 agcccagaggttaaagtatatgcttatgcggctgcacaagttaagaaagctttggaggtc 1068
||| | || ||| ||| |||||||| || ||||| || || |||||||| |||||||
Sbjct: 91 agctctgaagttggagtgtatgcttacgctgctgctcaggtgaagaaagccatggaggta 150
Query: 1069 actcactacctaggtggtgaaaactatgtgttctggggtggaagagagggttaccaaact 1128
|| || ||| |||||||||||||||| || || ||||||| | || ||||| || ||
Sbjct: 151 acacattacttaggtggtgaaaactacgtttttgggggtggtcgtgaaggttatcagaca 210
Query: 1129 cttctgaatac-tgatatgaagagagaacttgaccatctggctaactttcttcaagctgc 1187
|| |||| || ||||||| ||||| ||||| ||||| || | || || |||||||
Sbjct: 211 ctcttgaacacctgatatgggaagagagcttgatcatctagccaggttctttgaagctgc 270
Query: 1188 tgttgactacaagaagaagattggattcaacggaacactattgatagagcctaaaccaca 1247
||||| ||||||||||||||||||||||| || || || ||||| ||||| || || ||
Sbjct: 271 tgttgcttacaagaagaagattggattcaaaggcacgcttttgatcgagcccaagcctca 330
Query: 1248 ggaaccaacaaaacaccagtatgactgggatg 1279
||||| || || |||||||||||||||||||
Sbjct: 331 agaacccaccaagcaccagtatgactgggatg 362
>gb|CB257326.1|CB257326 33-E012738-027-002-A02-T7R MPIZ-ADIS-027 Arabidopsis thaliana cDNA
clone MPIZp772A022Q 5-PRIME, mRNA sequence
Length = 490
Score = 85.7 bits (43), Expect = 3e-014
Identities = 109/131 (83%)
Strand = Plus / Plus
Query: 677 ttgcgttctggcacacgttccgtggtactggcgctgatcctttcggtgctcctacaaaga 736
||||||| ||||| || |||||||| ||||| | |||||| || | |||| |||| |||
Sbjct: 1 ttgcgttttggcatactttccgtgggactggaggtgatccatttgatgctgctactaagt 60
Query: 737 cttggccttgggaggacggcacaaattctttggccatggctaagagaagaatgagagctc 796
|||||||||||| || || || || ||| || | ||||||||||||||||||||||||
Sbjct: 61 attggccttgggaagatggtactaactctgtgtctatggctaagagaagaatgagagcta 120
Query: 797 actttgagttc 807
|||||||||||
Sbjct: 121 actttgagttc 131
Score = 58.0 bits (29), Expect = 7e-006
Identities = 128/161 (79%)
Strand = Plus / Plus
Query: 949 ccattgtggggtactgcacagctctttatgcatcctcgttacatgcatggcgctgctact 1008
||||||||||| || || ||||| || ||||||||||||||||||| || | || ||
Sbjct: 273 ccattgtggggaacagctcagcttttcttgcatcctcgttacatgcacggaggagcgacc 332
Query: 1009 agcccagaggttaaagtatatgcttatgcggctgcacaagttaagaaagctttggaggtc 1068
||| | || ||| ||| |||||||| || ||||| || || || ||||| |||||||
Sbjct: 333 agctctgaagttggagtgtatgcttacgctgctgctcaggtgaataaagccatggaggta 392
Query: 1069 actcactacctaggtggtgaaaactatgtgttctggggtgg 1109
|| || ||| |||||||||||||||| || || ||||||||
Sbjct: 393 acacattacttaggtggtgaaaactacgttttttggggtgg 433
>gb|CB185811.1|CB185811 EST01001 Arabidopsis virulent Pseudomonas syringae subtracted library
Arabidopsis thaliana cDNA clone DC1-A1 similar to unknown
protein, mRNA sequence
Length = 679
Score = 83.8 bits (42), Expect = 1e-013
Identities = 182/229 (79%)
Strand = Plus / Minus
Query: 1051 aagaaagctttggaggtcactcactacctaggtggtgaaaactatgtgttctggggtgga 1110
|||||||| ||||||| || || ||| |||||||||||||||| || || ||||||||
Sbjct: 512 aagaaagccatggaggtaacacattacttaggtggtgaaaactacgttttttggggtggt 453
Query: 1111 agagagggttaccaaactcttctgaatactgatatgaagagagaacttgaccatctggct 1170
| || ||||| || || || |||| ||||||||| ||||| ||||| ||||| ||
Sbjct: 452 cgtgaaggttatcagacactcttgaacactgatatgggaagagagcttgatcatctagcc 393
Query: 1171 aactttcttcaagctgctgttgactacaagaagaagattggattcaacggaacactattg 1230
| || || |||||||||||| ||||||||||||||||||||||| || || || ||
Sbjct: 392 aggttctttgaagctgctgttgcttacaagaagaagattggattcaaaggcacgctttta 333
Query: 1231 atagagcctaaaccacaggaaccaacaaaacaccagtatgactgggatg 1279
|| ||||| | || || ||||| || || |||||||||||||||||||
Sbjct: 332 atcgagcccnagcctcaagaacccaccaagcaccagtatgactgggatg 284
Score = 46.1 bits (23), Expect = 0.026
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 1426 gatgcaaacactggtgatcctcaagttggttgggacacagatcagtt 1472
|||||||||||||| ||| ||||| ||| ||||| |||||||||||
Sbjct: 137 gatgcaaacactggcgatgctcaaactggatgggatacagatcagtt 91
>dbj|AB011482.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUA2
Length = 83478
Score = 81.8 bits (41), Expect = 5e-013
Identities = 212/269 (78%)
Strand = Plus / Plus
Query: 949 ccattgtggggtactgcacagctctttatgcatcctcgttacatgcatggcgctgctact 1008
||||||||||| || || ||||| || ||||||||||||| ||||| || | || ||
Sbjct: 79329 ccattgtggggaacagctcagcttttcttgcatcctcgttatatgcacggaggagcgacc 79388
Query: 1009 agcccagaggttaaagtatatgcttatgcggctgcacaagttaagaaagctttggaggtc 1068
||| | || ||| ||| |||||||| || ||||| || || |||||||| |||||||
Sbjct: 79389 agctctgaagttggagtgtatgcttacgctgctgctcaggtgaagaaagccatggaggta 79448
Query: 1069 actcactacctaggtggtgaaaactatgtgttctggggtggaagagagggttaccaaact 1128
|| || ||| |||||||||||||||| || || |||||||| | || ||||| || ||
Sbjct: 79449 acacattacttaggtggtgaaaactacgttttttggggtggtcgtgaaggttatcagaca 79508
Query: 1129 cttctgaatactgatatgaagagagaacttgaccatctggctaactttcttcaagctgct 1188
|| |||| ||||||||| ||||| ||||| ||||| || | || || ||||||||
Sbjct: 79509 ctcttgaacactgatatgggaagagagcttgatcatctagccaggttctttgaagctgct 79568
Query: 1189 gttgactacaagaagaagattggattcaa 1217
|||| |||||||||||||||||||||||
Sbjct: 79569 gttgcttacaagaagaagattggattcaa 79597
Score = 75.8 bits (38), Expect = 3e-011
Identities = 98/118 (83%)
Strand = Plus / Plus
Query: 670 ttcagtgttgcgttctggcacacgttccgtggtactggcgctgatcctttcggtgctcct 729
|||||||||||||| ||||| || |||||||| ||||| | |||||| || |||||| ||
Sbjct: 78546 ttcagtgttgcgttttggcatactttccgtgggactggaggtgatccatttggtgctgct 78605
Query: 730 acaaagacttggccttgggaggacggcacaaattctttggccatggctaagagaagaa 787
|| ||| |||||||||||| || || || || ||| || | ||||||||||||||||
Sbjct: 78606 actaagtattggccttgggaagatggtactaactctgtgtctatggctaagagaagaa 78663
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 81.8 bits (41), Expect = 5e-013
Identities = 212/269 (78%)
Strand = Plus / Plus
Query: 949 ccattgtggggtactgcacagctctttatgcatcctcgttacatgcatggcgctgctact 1008
||||||||||| || || ||||| || ||||||||||||| ||||| || | || ||
Sbjct: 20796573 ccattgtggggaacagctcagcttttcttgcatcctcgttatatgcacggaggagcgacc 20796632
Query: 1009 agcccagaggttaaagtatatgcttatgcggctgcacaagttaagaaagctttggaggtc 1068
||| | || ||| ||| |||||||| || ||||| || || |||||||| |||||||
Sbjct: 20796633 agctctgaagttggagtgtatgcttacgctgctgctcaggtgaagaaagccatggaggta 20796692
Query: 1069 actcactacctaggtggtgaaaactatgtgttctggggtggaagagagggttaccaaact 1128
|| || ||| |||||||||||||||| || || |||||||| | || ||||| || ||
Sbjct: 20796693 acacattacttaggtggtgaaaactacgttttttggggtggtcgtgaaggttatcagaca 20796752
Query: 1129 cttctgaatactgatatgaagagagaacttgaccatctggctaactttcttcaagctgct 1188
|| |||| ||||||||| ||||| ||||| ||||| || | || || ||||||||
Sbjct: 20796753 ctcttgaacactgatatgggaagagagcttgatcatctagccaggttctttgaagctgct 20796812
Query: 1189 gttgactacaagaagaagattggattcaa 1217
|||| |||||||||||||||||||||||
Sbjct: 20796813 gttgcttacaagaagaagattggattcaa 20796841
Score = 75.8 bits (38), Expect = 3e-011
Identities = 98/118 (83%)
Strand = Plus / Plus
Query: 670 ttcagtgttgcgttctggcacacgttccgtggtactggcgctgatcctttcggtgctcct 729
|||||||||||||| ||||| || |||||||| ||||| | |||||| || |||||| ||
Sbjct: 20795790 ttcagtgttgcgttttggcatactttccgtgggactggaggtgatccatttggtgctgct 20795849
Query: 730 acaaagacttggccttgggaggacggcacaaattctttggccatggctaagagaagaa 787
|| ||| |||||||||||| || || || || ||| || | ||||||||||||||||
Sbjct: 20795850 actaagtattggccttgggaagatggtactaactctgtgtctatggctaagagaagaa 20795907
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 81.8 bits (41), Expect = 5e-013
Identities = 212/269 (78%)
Strand = Plus / Plus
Query: 949 ccattgtggggtactgcacagctctttatgcatcctcgttacatgcatggcgctgctact 1008
||||||||||| || || ||||| || ||||||||||||| ||||| || | || ||
Sbjct: 23365614 ccattgtggggaacagctcagcttttcttgcatcctcgttatatgcacggaggagcgacc 23365673
Query: 1009 agcccagaggttaaagtatatgcttatgcggctgcacaagttaagaaagctttggaggtc 1068
||| | || ||| ||| |||||||| || ||||| || || |||||||| |||||||
Sbjct: 23365674 agctctgaagttggagtgtatgcttacgctgctgctcaggtgaagaaagccatggaggta 23365733
Query: 1069 actcactacctaggtggtgaaaactatgtgttctggggtggaagagagggttaccaaact 1128
|| || ||| |||||||||||||||| || || |||||||| | || ||||| || ||
Sbjct: 23365734 acacattacttaggtggtgaaaactacgttttttggggtggtcgtgaaggttatcagaca 23365793
Query: 1129 cttctgaatactgatatgaagagagaacttgaccatctggctaactttcttcaagctgct 1188
|| |||| ||||||||| ||||| ||||| ||||| || | || || ||||||||
Sbjct: 23365794 ctcttgaacactgatatgggaagagagcttgatcatctagccaggttctttgaagctgct 23365853
Query: 1189 gttgactacaagaagaagattggattcaa 1217
|||| |||||||||||||||||||||||
Sbjct: 23365854 gttgcttacaagaagaagattggattcaa 23365882
Score = 75.8 bits (38), Expect = 3e-011
Identities = 98/118 (83%)
Strand = Plus / Plus
Query: 670 ttcagtgttgcgttctggcacacgttccgtggtactggcgctgatcctttcggtgctcct 729
|||||||||||||| ||||| || |||||||| ||||| | |||||| || |||||| ||
Sbjct: 23364831 ttcagtgttgcgttttggcatactttccgtgggactggaggtgatccatttggtgctgct 23364890
Query: 730 acaaagacttggccttgggaggacggcacaaattctttggccatggctaagagaagaa 787
|| ||| |||||||||||| || || || || ||| || | ||||||||||||||||
Sbjct: 23364891 actaagtattggccttgggaagatggtactaactctgtgtctatggctaagagaagaa 23364948
>gb|BE525067.1|BE525067 M58B5STM Arabidopsis developing seed Arabidopsis thaliana cDNA clone
M58B5 5', mRNA sequence
Length = 397
Score = 79.8 bits (40), Expect = 2e-012
Identities = 160/200 (80%)
Strand = Plus / Plus
Query: 1080 aggtggtgaaaactatgtgttctggggtggaagagagggttaccaaactcttctgaatac 1139
||||||||||||||| || || |||||||| | || ||||| || || || |||| ||
Sbjct: 18 aggtggtgaaaactacgttttttggggtggtcgtgaaggttatcagacactcttgaacac 77
Query: 1140 tgatatgaagagagaacttgaccatctggctaactttcttcaagctgctgttgactacaa 1199
||||||| ||||| ||||| ||||| || | || || |||||||||||| |||||
Sbjct: 78 tgatatgggaagagagcttgatcatctagccaggttctttgaagctgctgttgcttacaa 137
Query: 1200 gaagaagattggattcaacggaacactattgatagagcctaaaccacaggaaccaacaaa 1259
|||||||||||||||||| || || || || || ||||| || || || ||||| || ||
Sbjct: 138 gaagaagattggattcaaaggcacgcttttaatcgagcccaagcctcaagaacccaccaa 197
Query: 1260 acaccagtatgactgggatg 1279
|||||||||||||||||||
Sbjct: 198 gcaccagtatgactgggatg 217
>gb|BP806790.1|BP806790 BP806790 RAFL16 Arabidopsis thaliana cDNA clone RAFL24-11-D06 5',
mRNA sequence
Length = 419
Score = 77.8 bits (39), Expect = 7e-012
Identities = 115/139 (82%), Gaps = 1/139 (0%)
Strand = Plus / Plus
Query: 670 ttcagtgttgcgttctggcacacgttccgtggtactggcgctgatcctttcggtgctcct 729
|||||||||||||| |||| || |||||||| ||||| | |||||| || |||||| ||
Sbjct: 269 ttcagtgttgcgtttgggcatactttccgtgggactggaggtgatccatttggtgctgct 328
Query: 730 acaaagacttggccttgggaggacggcaca-aattctttggccatggctaagagaagaat 788
|| ||| |||||||||||| || || || || ||| || | |||||||||||||||||
Sbjct: 329 actaagtattggccttgggaagatggtacctaactctgtgtctatggctaagagaagaat 388
Query: 789 gagagctcactttgagttc 807
||||||| |||| ||||||
Sbjct: 389 gagagctaacttggagttc 407
>dbj|AK221134.1| Arabidopsis thaliana mRNA for xylose isomerase, partial cds, clone:
RAFL22-92-O10
Length = 886
Score = 77.8 bits (39), Expect = 7e-012
Identities = 84/99 (84%)
Strand = Plus / Plus
Query: 1181 aagctgctgttgactacaagaagaagattggattcaacggaacactattgatagagccta 1240
|||||||||||| ||||||||||||||||||||||| || || || || || ||||| |
Sbjct: 33 aagctgctgttgcttacaagaagaagattggattcaaaggcacgcttttaatcgagccca 92
Query: 1241 aaccacaggaaccaacaaaacaccagtatgactgggatg 1279
| || || ||||| || || |||||||||||||||||||
Sbjct: 93 agcctcaagaacccaccaagcaccagtatgactgggatg 131
Score = 50.1 bits (25), Expect = 0.002
Identities = 106/133 (79%)
Strand = Plus / Plus
Query: 1340 ttgagtgcaaccatgctactctatctggacacagctgccatcatgaattggagactgcac 1399
||||||| |||||||| || || ||||| |||| || ||||| || | || ||||||
Sbjct: 192 ttgagtgtaaccatgccacgctctctggtcacacttgtcatcacgagcttgaaactgcaa 251
Query: 1400 ggattaatgggctgcttggaaatatcgatgcaaacactggtgatcctcaagttggttggg 1459
| |||||||| | ||||| || || |||||||||||||| ||| ||||| ||| ||||
Sbjct: 252 gaattaatggtttacttggcaacattgatgcaaacactggcgatgctcaaactggatggg 311
Query: 1460 acacagatcagtt 1472
| |||||||||||
Sbjct: 312 atacagatcagtt 324
>gb|CL514595.1|CL514595 SAIL_890_H08.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_890_H08.v1, DNA sequence
Length = 849
Score = 75.8 bits (38), Expect = 3e-011
Identities = 98/118 (83%)
Strand = Plus / Plus
Query: 670 ttcagtgttgcgttctggcacacgttccgtggtactggcgctgatcctttcggtgctcct 729
|||||||||||||| ||||| || |||||||| ||||| | |||||| || |||||| ||
Sbjct: 402 ttcagtgttgcgttttggcatactttccgtgggactggaggtgatccatttggtgctgct 461
Query: 730 acaaagacttggccttgggaggacggcacaaattctttggccatggctaagagaagaa 787
|| ||| |||||||||||| || || || || ||| || | ||||||||||||||||
Sbjct: 462 actaagtattggccttgggaagatggtactaactctgtgtctatggctaagagaagaa 519
>gb|BP832523.1|BP832523 BP832523 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-92-O10 5',
mRNA sequence
Length = 359
Score = 69.9 bits (35), Expect = 2e-009
Identities = 84/99 (84%), Gaps = 1/99 (1%)
Strand = Plus / Plus
Query: 1181 aagctgctgttgactacaagaagaagattggattcaacggaacactattgatagagccta 1240
|||||||||||| ||||||||||||||||||||||| || || || || || ||||| |
Sbjct: 32 aagctgctgttgcttacaagaagaagattggattcaaaggcacgcttttaatcgagccca 91
Query: 1241 aaccacaggaaccaacaaaacaccagtatgactgggatg 1279
| || || ||||| || || |||||||||||||||||||
Sbjct: 92 agcctcaagaacc-accaagcaccagtatgactgggatg 129
Score = 46.1 bits (23), Expect = 0.026
Identities = 65/79 (82%)
Strand = Plus / Plus
Query: 1393 actgcacggattaatgggctgcttggaaatatcgatgcaaacactggtgatcctcaagtt 1452
|||||| | |||||||| | ||||| || || |||||||||||||| ||| ||||| |
Sbjct: 245 actgcaagaattaatggtttacttggcaacatggatgcaaacactggggatgctcaaact 304
Query: 1453 ggttgggacacagatcagt 1471
|| ||||| ||||||||||
Sbjct: 305 ggatgggatacagatcagt 323
>emb|BX834102.1|CNS0A1T5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL9ZA09 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 1087
Score = 69.9 bits (35), Expect = 2e-009
Identities = 152/191 (79%)
Strand = Plus / Plus
Query: 1027 tatgcttatgcggctgcacaagttaagaaagctttggaggtcactcactacctaggtggt 1086
|||||||| || ||||| || || |||||||| ||||||| || || ||| ||||||||
Sbjct: 152 tatgcttacgctgctgctcaggtgaagaaagccatggaggtaacacattacttaggtggt 211
Query: 1087 gaaaactatgtgttctggggtggaagagagggttaccaaactcttctgaatactgatatg 1146
|||||||| || || |||||||| | || ||||| || || || |||| |||||||||
Sbjct: 212 gaaaactacgttttttggggtggtcgtgaaggttatcagacactcttgaacactgatatg 271
Query: 1147 aagagagaacttgaccatctggctaactttcttcaagctgctgttgactacaagaagaag 1206
||| | ||||| ||||| || | || || |||||||||||| ||||||||||||
Sbjct: 272 ggaagacagcttgatcatctagccaggttctttgaagctgctgttgcttacaagaagaag 331
Query: 1207 attggattcaa 1217
|||||||||||
Sbjct: 332 attggattcaa 342
Score = 46.1 bits (23), Expect = 0.026
Identities = 104/131 (79%)
Strand = Plus / Plus
Query: 1340 ttgagtgcaaccatgctactctatctggacacagctgccatcatgaattggagactgcac 1399
||||||| |||||||| || || ||||| |||| || ||||| || | || ||||||
Sbjct: 466 ttgagtgtaaccatgccacgctctctggtcacacttgtcatcacgagcttgaaactgcaa 525
Query: 1400 ggattaatgggctgcttggaaatatcgatgcaaacactggtgatcctcaagttggttggg 1459
| |||||||| | ||||| || || |||||||||||||| ||| ||||| ||| ||||
Sbjct: 526 gaattaatggtttacttggcaacattgatgcaaacactggcgatgctcaaactggatggg 585
Query: 1460 acacagatcag 1470
| |||||||||
Sbjct: 586 atacagatcag 596
>gb|BP811038.1|BP811038 BP811038 RAFL16 Arabidopsis thaliana cDNA clone RAFL24-28-I22 5',
mRNA sequence
Length = 392
Score = 61.9 bits (31), Expect = 4e-007
Identities = 83/99 (83%), Gaps = 1/99 (1%)
Strand = Plus / Plus
Query: 1181 aagctgctgttgactacaagaagaagattggattcaacggaacactattgatagagccta 1240
|||||||||||| |||||||||||||| |||||||| || || || || || ||||| |
Sbjct: 110 aagctgctgttgcttacaagaagaagatgggattcaaaggcacgcttttaatcgagccca 169
Query: 1241 aaccacaggaaccaacaaaacaccagtatgactgggatg 1279
| || || ||||| || || |||||||||||||||||||
Sbjct: 170 agcctcaagaacccac-aagcaccagtatgactgggatg 207
>gb|BP809475.1|BP809475 BP809475 RAFL16 Arabidopsis thaliana cDNA clone RAFL24-21-M13 5',
mRNA sequence
Length = 400
Score = 60.0 bits (30), Expect = 2e-006
Identities = 108/134 (80%)
Strand = Plus / Plus
Query: 574 aagtatgagggtccaacaagcaagaaccctcttgcttataagtggtataacaaggaggaa 633
||||||||||| || | || |||||||| |||||||| | |||||||||| || |||
Sbjct: 261 aagtatgagggaccttcgagtaagaacccacttgcttacaggtggtataacgctgaagaa 320
Query: 634 gtgattctcggtaagaagatgaaggattggatgcgcttcagtgttgcgttctggcacacg 693
| |||||| || ||||| ||||||||| || | | |||||||||||||| |||| ||
Sbjct: 321 gagattcttgggaagaaaatgaaggatgggtttagattcagtgttgcgtttgggcatact 380
Query: 694 ttccgtggtactgg 707
|||||||| |||||
Sbjct: 381 ttccgtgggactgg 394
>gb|BP813118.1|BP813118 BP813118 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-05-H04 5',
mRNA sequence
Length = 404
Score = 60.0 bits (30), Expect = 2e-006
Identities = 90/110 (81%)
Strand = Plus / Plus
Query: 574 aagtatgagggtccaacaagcaagaaccctcttgcttataagtggtataacaaggaggaa 633
||||||||||| || | || |||||||| |||||||| | |||||||||| || |||
Sbjct: 265 aagtatgagggaccttcgagtaagaacccacttgcttacaggtggtataacgctgaagaa 324
Query: 634 gtgattctcggtaagaagatgaaggattggatgcgcttcagtgttgcgtt 683
| |||||| || ||||| |||||||||||| | | ||||||||||||||
Sbjct: 325 gagattctggggaagaaaatgaaggattggtttagattcagtgttgcgtt 374
>gb|BP821965.1|BP821965 BP821965 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-59-M18 5',
mRNA sequence
Length = 406
Score = 58.0 bits (29), Expect = 7e-006
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 1181 aagctgctgttgactacaagaagaagattggattcaa 1217
|||||||||||| |||||||||||||||||||||||
Sbjct: 32 aagctgctgttgcttacaagaagaagattggattcaa 68
>gb|BP811060.1|BP811060 BP811060 RAFL16 Arabidopsis thaliana cDNA clone RAFL24-28-K05 5',
mRNA sequence
Length = 398
Score = 54.0 bits (27), Expect = 1e-004
Identities = 115/143 (80%), Gaps = 1/143 (0%)
Strand = Plus / Plus
Query: 574 aagtatgagggtccaacaagcaagaaccctcttgcttataagtggtataacaaggaggaa 633
||||||||||| || | || |||||||| |||||||| | |||||||||| || |||
Sbjct: 257 aagtatgagggaccttcgagtaagaacccacttgcttacaggtggtataacgctgaagaa 316
Query: 634 gtgattctcggtaagaagatgaaggattggatgcgcttcagtgttgcgttctggcacacg 693
| |||||| || ||||| |||||||||||| | | ||||||||||||| ||||| ||
Sbjct: 317 gagattcttgggaagaaaatgaaggattggtttag-atcagtgttgcgttttggcatact 375
Query: 694 ttccgtggtactggcgctgatcc 716
| |||||| ||||| | ||||||
Sbjct: 376 tcccgtgggactggaggtgatcc 398
>gb|BP809456.1|BP809456 BP809456 RAFL16 Arabidopsis thaliana cDNA clone RAFL24-21-L03 5',
mRNA sequence
Length = 401
Score = 52.0 bits (26), Expect = 4e-004
Identities = 74/90 (82%)
Strand = Plus / Plus
Query: 574 aagtatgagggtccaacaagcaagaaccctcttgcttataagtggtataacaaggaggaa 633
||||||||||| || | || |||||||| |||||||| | |||||||||| || |||
Sbjct: 264 aagtatgagggaccttcgagtaagaacccacttgcttacaggtggtataacgctgaagaa 323
Query: 634 gtgattctcggtaagaagatgaaggattgg 663
| |||||| || ||||| ||||||||||||
Sbjct: 324 gagattcttgggaagaaaatgaaggattgg 353
>gb|BP833245.1|BP833245 BP833245 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-95-G14 5',
mRNA sequence
Length = 378
Score = 52.0 bits (26), Expect = 4e-004
Identities = 74/90 (82%)
Strand = Plus / Plus
Query: 574 aagtatgagggtccaacaagcaagaaccctcttgcttataagtggtataacaaggaggaa 633
||||||||||| || | || |||||||| |||||||| | |||||||||| || |||
Sbjct: 265 aagtatgagggaccttcgagtaagaacccacttgcttacaggtggtataacgctgaagaa 324
Query: 634 gtgattctcggtaagaagatgaaggattgg 663
| |||||| || ||||| ||||||||||||
Sbjct: 325 gagattcttgggaagaaaatgaaggattgg 354
>gb|BP859550.1|BP859550 BP859550 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-41-B05 5',
mRNA sequence
Length = 396
Score = 52.0 bits (26), Expect = 4e-004
Identities = 74/90 (82%)
Strand = Plus / Plus
Query: 574 aagtatgagggtccaacaagcaagaaccctcttgcttataagtggtataacaaggaggaa 633
||||||||||| || | || |||||||| |||||||| | |||||||||| || |||
Sbjct: 271 aagtatgagggaccttcgagtaagaacccacttgcttacaggtggtataacgctgaagaa 330
Query: 634 gtgattctcggtaagaagatgaaggattgg 663
| |||||| || ||||| ||||||||||||
Sbjct: 331 gagattcttgggaagaaaatgaaggattgg 360
>gb|CB258622.1|CB258622 23-E012735-014-002-N14-T7R MPIZ-ADIS-014 Arabidopsis thaliana cDNA
clone MPIZp771N142Q 5-PRIME, mRNA sequence
Length = 656
Score = 50.1 bits (25), Expect = 0.002
Identities = 106/133 (79%)
Strand = Plus / Plus
Query: 1340 ttgagtgcaaccatgctactctatctggacacagctgccatcatgaattggagactgcac 1399
||||||| |||||||| || || ||||| |||| || ||||| || | || ||||||
Sbjct: 15 ttgagtgtaaccatgccacgctctctggtcacacttgtcatcacgagcttgaaactgcaa 74
Query: 1400 ggattaatgggctgcttggaaatatcgatgcaaacactggtgatcctcaagttggttggg 1459
| |||||||| | ||||| || || |||||||||||||| ||| ||||| ||| ||||
Sbjct: 75 gaattaatggtttacttggcaacattgatgcaaacactggcgatgctcaaactggatggg 134
Query: 1460 acacagatcagtt 1472
| |||||||||||
Sbjct: 135 atacagatcagtt 147
>gb|AV552093.1|AV552093 AV552093 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ20e11R 5', mRNA sequence
Length = 381
Score = 50.1 bits (25), Expect = 0.002
Identities = 106/133 (79%)
Strand = Plus / Plus
Query: 1340 ttgagtgcaaccatgctactctatctggacacagctgccatcatgaattggagactgcac 1399
||||||| |||||||| || || ||||| |||| || ||||| || | || ||||||
Sbjct: 128 ttgagtgtaaccatgccacgctctctggtcacacttgtcatcacgagcttgaaactgcaa 187
Query: 1400 ggattaatgggctgcttggaaatatcgatgcaaacactggtgatcctcaagttggttggg 1459
| |||||||| | ||||| || || |||||||||||||| ||| ||||| ||| ||||
Sbjct: 188 gaattaatggtttacttggcaacattgatgcaaacactggcgatgctcaaactggatggg 247
Query: 1460 acacagatcagtt 1472
| |||||||||||
Sbjct: 248 atacagatcagtt 260
>gb|BP808126.1|BP808126 BP808126 RAFL16 Arabidopsis thaliana cDNA clone RAFL24-16-I12 5',
mRNA sequence
Length = 401
Score = 50.1 bits (25), Expect = 0.002
Identities = 88/109 (80%)
Strand = Plus / Plus
Query: 574 aagtatgagggtccaacaagcaagaaccctcttgcttataagtggtataacaaggaggaa 633
||||||||||| || | || |||||||| |||||||| | |||||||||| || |||
Sbjct: 270 aagtatgagggaccttcgagtaagaacccacttgcttacaggtggtataacgctgaagaa 329
Query: 634 gtgattctcggtaagaagatgaaggattggatgcgcttcagtgttgcgt 682
| |||||| || ||||| ||||||||| || | | |||||||||||||
Sbjct: 330 gagattcttgggaagaaaatgaaggatgggtttagattcagtgttgcgt 378
>gb|BP846858.1|BP846858 BP846858 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-98-H22 5',
mRNA sequence
Length = 401
Score = 50.1 bits (25), Expect = 0.002
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 595 aagaaccctcttgcttataagtggtataacaaggaggaagtgattctcggtaagaagatg 654
|||||||| |||||||| | |||||||||| || |||| |||||| || ||||| |||
Sbjct: 314 aagaacccacttgcttacaggtggtataacgctgaagaagagattcttgggaagaaaatg 373
Query: 655 aaggattgg 663
|||||||||
Sbjct: 374 aaggattgg 382
>gb|AV784040.1|AV784040 AV784040 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-15-K08 3', mRNA
sequence
Length = 657
Score = 48.1 bits (24), Expect = 0.007
Identities = 66/80 (82%)
Strand = Plus / Minus
Query: 1393 actgcacggattaatgggctgcttggaaatatcgatgcaaacactggtgatcctcaagtt 1452
|||||| | |||||||| | ||||| || || |||||||||||||| ||| ||||| |
Sbjct: 656 actgcaagaattaatggtttacttggcaacattgatgcaaacactggcgatgctcaaact 597
Query: 1453 ggttgggacacagatcagtt 1472
|| ||||| |||||||||||
Sbjct: 596 ggatgggatacagatcagtt 577
>gb|BP861580.1|BP861580 BP861580 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-48-C11 5',
mRNA sequence
Length = 377
Score = 48.1 bits (24), Expect = 0.007
Identities = 72/88 (81%)
Strand = Plus / Plus
Query: 574 aagtatgagggtccaacaagcaagaaccctcttgcttataagtggtataacaaggaggaa 633
||||||||||| || | || |||||||| |||||||| | |||||||||| || |||
Sbjct: 290 aagtatgagggaccttcgagtaagaacccacttgcttacaggtggtataacgctgaagaa 349
Query: 634 gtgattctcggtaagaagatgaaggatt 661
| |||||| || ||||| ||||||||||
Sbjct: 350 gagattcttgggaagaaaatgaaggatt 377
>gb|T22346.1|T22346 4354 Lambda-PRL2 Arabidopsis thaliana cDNA clone 104C19T7, mRNA
sequence
Length = 376
Score = 46.1 bits (23), Expect = 0.026
Identities = 88/110 (80%)
Strand = Plus / Plus
Query: 574 aagtatgagggtccaacaagcaagaaccctcttgcttataagtggtataacaaggaggaa 633
||||||||||| || | || |||||||| |||||||| | |||||||||| || |||
Sbjct: 184 aagtatgagggaccttcgagtaagaacccacttgcttacaggtggtataacgctgaagaa 243
Query: 634 gtgattctcggtaagaagatgaaggattggatgcgcttcagtgttgcgtt 683
| |||||| || ||||| ||||||| |||| | ||||||||||||||
Sbjct: 244 gagattcttgggaagaaaatgaagggttggtttanattcagtgttgcgtt 293
>gb|AV543392.1|AV543392 AV543392 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ20e11F 3', mRNA sequence
Length = 551
Score = 46.1 bits (23), Expect = 0.026
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 1426 gatgcaaacactggtgatcctcaagttggttgggacacagatcagtt 1472
|||||||||||||| ||| ||||| ||| ||||| |||||||||||
Sbjct: 541 gatgcaaacactggcgatgctcaaactggatgggatacagatcagtt 495
>gb|BP843314.1|BP843314 BP843314 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-57-L06 5',
mRNA sequence
Length = 380
Score = 46.1 bits (23), Expect = 0.026
Identities = 71/87 (81%)
Strand = Plus / Plus
Query: 574 aagtatgagggtccaacaagcaagaaccctcttgcttataagtggtataacaaggaggaa 633
||||||||||| || | || |||||||| |||||||| | |||||||||| || |||
Sbjct: 270 aagtatgagggaccttcgagtaagaacccacttgcttacaggtggtataacgctgaagaa 329
Query: 634 gtgattctcggtaagaagatgaaggat 660
| |||||| || ||||| |||||||||
Sbjct: 330 gagattctggggaagaaaatgaaggat 356
>gb|BP843918.1|BP843918 BP843918 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-88-H08 5',
mRNA sequence
Length = 390
Score = 46.1 bits (23), Expect = 0.026
Identities = 71/87 (81%)
Strand = Plus / Plus
Query: 574 aagtatgagggtccaacaagcaagaaccctcttgcttataagtggtataacaaggaggaa 633
||||||||||| || | || |||||||| |||||||| | |||||||||| || |||
Sbjct: 264 aagtatgagggaccttcgagtaagaacccacttgcttacaggtggtataacgctgaagaa 323
Query: 634 gtgattctcggtaagaagatgaaggat 660
| |||||| || ||||| |||||||||
Sbjct: 324 gagattcttgggaagaaaatgaaggat 350
>gb|BP851388.1|BP851388 BP851388 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-16-D23 5',
mRNA sequence
Length = 379
Score = 46.1 bits (23), Expect = 0.026
Identities = 71/87 (81%)
Strand = Plus / Plus
Query: 574 aagtatgagggtccaacaagcaagaaccctcttgcttataagtggtataacaaggaggaa 633
||||||||||| || | || |||||||| |||||||| | |||||||||| || |||
Sbjct: 291 aagtatgagggaccttcgagtaagaacccacttgcttacaggtggtataacgctgaagaa 350
Query: 634 gtgattctcggtaagaagatgaaggat 660
| |||||| || ||||| |||||||||
Sbjct: 351 gagattctggggaagaaaatgaaggat 377
>gb|BP853903.1|BP853903 BP853903 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-59-M20 5',
mRNA sequence
Length = 385
Score = 46.1 bits (23), Expect = 0.026
Identities = 71/87 (81%)
Strand = Plus / Plus
Query: 574 aagtatgagggtccaacaagcaagaaccctcttgcttataagtggtataacaaggaggaa 633
||||||||||| || | || |||||||| |||||||| | |||||||||| || |||
Sbjct: 267 aagtatgagggaccttcgagtaagaacccacttgcttacaggtggtataacgctgaagaa 326
Query: 634 gtgattctcggtaagaagatgaaggat 660
| |||||| || ||||| |||||||||
Sbjct: 327 gagattcttgggaagaaaatgaaggat 353
>gb|BP867295.1|BP867295 BP867295 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-80-J04 5',
mRNA sequence
Length = 362
Score = 46.1 bits (23), Expect = 0.026
Identities = 71/87 (81%)
Strand = Plus / Plus
Query: 574 aagtatgagggtccaacaagcaagaaccctcttgcttataagtggtataacaaggaggaa 633
||||||||||| || | || |||||||| |||||||| | |||||||||| || |||
Sbjct: 259 aagtatgagggaccttcgagtaagaacccacttgcttacaggtggtataacgctgaagaa 318
Query: 634 gtgattctcggtaagaagatgaaggat 660
| |||||| || ||||| |||||||||
Sbjct: 319 gagattcttgggaagaaaatgaaggat 345
>gb|N65577.1|N65577 20617 Lambda-PRL2 Arabidopsis thaliana cDNA clone 232H1T7, mRNA
sequence
Length = 282
Score = 44.1 bits (22), Expect = 0.10
Identities = 114/146 (78%)
Strand = Plus / Plus
Query: 949 ccattgtggggtactgcacagctctttatgcatcctcgttacatgcatggcgctgctact 1008
||||||||||| || || ||||| | | |||||||||||||||||| || | || ||
Sbjct: 33 ccattgtggggaacagctcagctttnttngcatcctcgttacatgcacggaggagcgacc 92
Query: 1009 agcccagaggttaaagtatatgcttatgcggctgcacaagttaagaaagctttggaggtc 1068
||| | | ||| ||| |||||||| | ||||| || || |||||||| |||||||
Sbjct: 93 agctctnaagttggagtgtatgcttacnctgctgctcaggtgaagaaagccatggaggta 152
Query: 1069 actcactacctaggtggtgaaaacta 1094
|| || ||| ||||||||||||||||
Sbjct: 153 acacattacttaggtggtgaaaacta 178
>gb|BP808700.1|BP808700 BP808700 RAFL16 Arabidopsis thaliana cDNA clone RAFL24-18-N08 5',
mRNA sequence
Length = 391
Score = 44.1 bits (22), Expect = 0.10
Identities = 74/90 (82%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 574 aagtatgagggtccaacaagcaagaaccctcttgcttataagtggtataacaaggaggaa 633
||||||||||| || | || |||||||| |||||||| | |||||||||| || |||
Sbjct: 299 aagtatgagggaccttcgagtaagaacccacttgcttacaggtggtataacgctgaagaa 358
Query: 634 gtgattctcggtaagaagatgaaggattgg 663
| |||||| || ||||| ||||||||||||
Sbjct: 359 gagattct-gggaagaaaatgaaggattgg 387
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,025,201
Number of Sequences: 1013581
Number of extensions: 1025201
Number of successful extensions: 74286
Number of sequences better than 0.5: 47
Number of HSP's better than 0.5 without gapping: 46
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 73476
Number of HSP's gapped (non-prelim): 806
length of query: 2204
length of database: 908,940,872
effective HSP length: 21
effective length of query: 2183
effective length of database: 887,655,671
effective search space: 1937752329793
effective search space used: 1937752329793
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)