BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= L46398.2.1
(1263 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BZ663057.1|BZ663057 SALK_026551.47.05.x Arabidopsis thal... 64 6e-008
gb|BE038223.1|BE038223 AA10E11 AA Arabidopsis thaliana cDNA... 64 6e-008
gb|DR750275.1|DR750275 65-L020098-065-001-A09-SeLA MPIZ-ADI... 64 6e-008
gb|DR750276.1|DR750276 65-L020099-065-001-A09-SeLB MPIZ-ADI... 64 6e-008
gb|AF211171.1|AF211171 Arabidopsis thaliana short vegetativ... 64 6e-008
emb|AX052687.1| Sequence 1 from Patent WO0070053 64 6e-008
emb|AX052689.1| Sequence 3 from Patent WO0070053 64 6e-008
emb|AX052691.1| Sequence 5 from Patent WO0070053 64 6e-008
emb|AX052692.1| Sequence 6 from Patent WO0070053 64 6e-008
emb|AX052693.1| Sequence 7 from Patent WO0070053 64 6e-008
emb|AX506507.1| Sequence 1202 from Patent WO0216655 64 6e-008
gb|AC006592.6| Arabidopsis thaliana chromosome 2 clone F14M... 64 6e-008
emb|BX842431.1|CNS0A8GM Arabidopsis thaliana Full-length cD... 64 6e-008
emb|BX842440.1|CNS0A8OH Arabidopsis thaliana Full-length cD... 64 6e-008
emb|BX842447.1|CNS0A8UX Arabidopsis thaliana Full-length cD... 64 6e-008
emb|BX842456.1|CNS0A915 Arabidopsis thaliana Full-length cD... 64 6e-008
ref|NM_127820.2| Arabidopsis thaliana SVP (SHORT VEGETATIVE... 64 6e-008
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 64 6e-008
gb|AY727601.1| Arabidopsis thaliana ecotype Ita-0 SEPALLATA... 60 1e-006
gb|AY727604.1| Arabidopsis thaliana ecotype Lu-1 SEPALLATA2... 60 1e-006
gb|AY727610.1| Arabidopsis thaliana ecotype PHW-33 SEPALLAT... 60 1e-006
gb|AY727614.1| Arabidopsis thaliana ecotype Cha-0 SEPALLATA... 60 1e-006
gb|AY727618.1| Arabidopsis thaliana ecotype Ko-2 SEPALLATA2... 60 1e-006
gb|DR750509.1|DR750509 52-L022242-065-008-D07-SeLA MPIZ-ADI... 58 4e-006
gb|DR750510.1|DR750510 52-L022243-065-008-D07-SeLB MPIZ-ADI... 58 4e-006
gb|U20183.1|ATU20183 Arabidopsis thaliana MADS-box protein ... 58 4e-006
ref|NM_115976.1| Arabidopsis thaliana AGL13 (AGAMOUS-LIKE 1... 58 4e-006
gb|CW843825.1|CW843825 GT10086.Ds5.02.18.2003.jw81.365 Arab... 56 2e-005
gb|DR751531.1|DR751531 01-L020098-065-001-A01-SeLA MPIZ-ADI... 56 2e-005
gb|DR751532.1|DR751532 01-L020099-065-001-A01-SeLB MPIZ-ADI... 56 2e-005
gb|M55554.1|ATHAGL6A Arabidopsis thaliana transcription fac... 56 2e-005
gb|AC003680.3| Arabidopsis thaliana chromosome 2 BAC F17K2 ... 56 2e-005
dbj|AK175241.1| Arabidopsis thaliana mRNA for short vegegat... 56 2e-005
ref|NM_130127.1| Arabidopsis thaliana AGL6; DNA binding / t... 56 2e-005
emb|BX001412.1| Arabidopsis thaliana T-DNA flanking sequenc... 52 2e-004
gb|BP821241.1|BP821241 BP821241 RAFL19 Arabidopsis thaliana... 52 2e-004
gb|DR750677.1|DR750677 44-L022242-065-008-D06-SeLA MPIZ-ADI... 52 2e-004
gb|M55552.1|ATHAGL4A Arabidopsis thaliana transcription fac... 52 2e-004
gb|BT004054.1| Arabidopsis thaliana clone RAFL15-21-I11 (R2... 52 2e-004
emb|BX284430.1| Arabidopsis thaliana transposon insertion S... 52 2e-004
emb|BX284449.1| Arabidopsis thaliana transposon insertion S... 52 2e-004
emb|BX293740.1| Arabidopsis thaliana transposon insertion S... 52 2e-004
emb|BX293752.1| Arabidopsis thaliana transposon insertion S... 52 2e-004
gb|AC009755.7|ATAC009755 Arabidopsis thaliana chromosome II... 52 2e-004
emb|BX823794.1|CNS0A4WO Arabidopsis thaliana Full-length cD... 52 2e-004
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 52 2e-004
gb|AY727599.1| Arabidopsis thaliana ecotype Co-1 SEPALLATA2... 52 2e-004
gb|AY727600.1| Arabidopsis thaliana ecotype Es-0 SEPALLATA2... 52 2e-004
gb|AY727602.1| Arabidopsis thaliana ecotype Kas-1 SEPALLATA... 52 2e-004
gb|AY727603.1| Arabidopsis thaliana ecotype Li-3 SEPALLATA2... 52 2e-004
gb|AY727605.1| Arabidopsis thaliana ecotype Mt-0 SEPALLATA2... 52 2e-004
gb|AY727606.1| Arabidopsis thaliana ecotype PLA-0 SEPALLATA... 52 2e-004
gb|AY727607.1| Arabidopsis thaliana ecotype Pog-0 SEPALLATA... 52 2e-004
gb|AY727608.1| Arabidopsis thaliana ecotype Tsu-1 SEPALLATA... 52 2e-004
gb|AY727609.1| Arabidopsis thaliana ecotype PHW-1 SEPALLATA... 52 2e-004
gb|AY727611.1| Arabidopsis thaliana ecotype Kondara SEPALLA... 52 2e-004
gb|AY727612.1| Arabidopsis thaliana ecotype An-2 SEPALLATA2... 52 2e-004
gb|AY727613.1| Arabidopsis thaliana ecotype Br-0 SEPALLATA2... 52 2e-004
gb|AY727615.1| Arabidopsis thaliana ecotype Di-0 SEPALLATA2... 52 2e-004
gb|AY727616.1| Arabidopsis thaliana ecotype Est-1 SEPALLATA... 52 2e-004
gb|AY727617.1| Arabidopsis thaliana ecotype Kl-5 SEPALLATA2... 52 2e-004
gb|AY727619.1| Arabidopsis thaliana ecotype Lip-0 SEPALLATA... 52 2e-004
gb|AY727620.1| Arabidopsis thaliana ecotype 9481B SEPALLATA... 52 2e-004
gb|BT020478.1| Arabidopsis thaliana At3g02310 gene, complet... 52 2e-004
emb|AL137898.1|ATT20K12 Arabidopsis thaliana DNA chromosome... 52 2e-004
ref|NM_111098.3| Arabidopsis thaliana SEP2 (SEPALLATA2); DN... 52 2e-004
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 52 2e-004
gb|DR751530.1|DR751530 01-L021260-065-001-A01S-SeLA MPIZ-AD... 48 0.004
gb|AV828127.1|AV828127 AV828127 RAFL9 Arabidopsis thaliana ... 42 0.23
gb|BU636533.1|BU636533 006H08 Infected Arabidopsis Leaf Ara... 42 0.23
gb|BX837240.1|BX837240 BX837240 Arabidopsis thaliana Adult ... 42 0.23
gb|AV441647.1|AV441647 AV441647 Arabidopsis thaliana above-... 42 0.23
gb|DR750280.1|DR750280 63-L022242-065-008-G08-SeLA MPIZ-ADI... 42 0.23
gb|DR750712.1|DR750712 42-L022242-065-008-B06-SeLA MPIZ-ADI... 42 0.23
gb|DR750732.1|DR750732 43-L022242-065-008-C06-SeLA MPIZ-ADI... 42 0.23
gb|U81369.1|ATU81369 Arabidopsis thaliana MADS box protein ... 42 0.23
gb|AY063894.1| Arabidopsis thaliana putative MADS-box prote... 42 0.23
gb|AY096386.1| Arabidopsis thaliana putative MADS-box prote... 42 0.23
emb|AX507178.1| Sequence 1873 from Patent WO0216655 42 0.23
gb|AY141229.1| Arabidopsis thaliana MADS-box protein AGL3-I... 42 0.23
gb|AC006836.7| Arabidopsis thaliana chromosome 2 clone F19B... 42 0.23
emb|BX819695.1|CNS0A8HF Arabidopsis thaliana Full-length cD... 42 0.23
ref|NM_126418.1| Arabidopsis thaliana AGL3 (AGAMOUS-LIKE 3)... 42 0.23
ref|NM_179599.1| Arabidopsis thaliana AGL3 (AGAMOUS-LIKE 3)... 42 0.23
ref|NM_201682.1| Arabidopsis thaliana AGL3 (AGAMOUS-LIKE 3)... 42 0.23
>gb|BZ663057.1|BZ663057 SALK_026551.47.05.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_026551.47.05.x,
DNA sequence
Length = 426
Score = 63.9 bits (32), Expect = 6e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 304 ctctccgtgctctgcgacgccgaggtcgcgctcatcatcttctc 347
|||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 114 ctctccgttctctgcgacgccgatgtcgctctcatcatcttctc 157
>gb|BE038223.1|BE038223 AA10E11 AA Arabidopsis thaliana cDNA 5' similar to mads-box
protein, mRNA sequence
Length = 704
Score = 63.9 bits (32), Expect = 6e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 304 ctctccgtgctctgcgacgccgaggtcgcgctcatcatcttctc 347
|||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 241 ctctccgttctctgcgacgccgatgtcgctctcatcatcttctc 284
>gb|DR750275.1|DR750275 65-L020098-065-001-A09-SeLA MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 001-A09, mRNA sequence
Length = 953
Score = 63.9 bits (32), Expect = 6e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 304 ctctccgtgctctgcgacgccgaggtcgcgctcatcatcttctc 347
|||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 194 ctctccgttctctgcgacgccgatgtcgctctcatcatcttctc 237
>gb|DR750276.1|DR750276 65-L020099-065-001-A09-SeLB MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 001-A09, mRNA sequence
Length = 920
Score = 63.9 bits (32), Expect = 6e-008
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 304 ctctccgtgctctgcgacgccgaggtcgcgctcatcatcttctc 347
|||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 648 ctctccgttctctgcgacgccgatgtcgctctcatcatcttctc 605
>gb|AF211171.1|AF211171 Arabidopsis thaliana short vegetative phase protein (SVP) mRNA,
complete cds
Length = 1518
Score = 63.9 bits (32), Expect = 6e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 304 ctctccgtgctctgcgacgccgaggtcgcgctcatcatcttctc 347
|||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 632 ctctccgttctctgcgacgccgatgtcgctctcatcatcttctc 675
>emb|AX052687.1| Sequence 1 from Patent WO0070053
Length = 1771
Score = 63.9 bits (32), Expect = 6e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 304 ctctccgtgctctgcgacgccgaggtcgcgctcatcatcttctc 347
|||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 514 ctctccgttctctgcgacgccgatgtcgctctcatcatcttctc 557
>emb|AX052689.1| Sequence 3 from Patent WO0070053
Length = 1368
Score = 63.9 bits (32), Expect = 6e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 304 ctctccgtgctctgcgacgccgaggtcgcgctcatcatcttctc 347
|||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 521 ctctccgttctctgcgacgccgatgtcgctctcatcatcttctc 564
>emb|AX052691.1| Sequence 5 from Patent WO0070053
Length = 2134
Score = 63.9 bits (32), Expect = 6e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 304 ctctccgtgctctgcgacgccgaggtcgcgctcatcatcttctc 347
|||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 103 ctctccgttctctgcgacgccgatgtcgctctcatcatcttctc 146
>emb|AX052692.1| Sequence 6 from Patent WO0070053
Length = 3184
Score = 63.9 bits (32), Expect = 6e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 304 ctctccgtgctctgcgacgccgaggtcgcgctcatcatcttctc 347
|||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 103 ctctccgttctctgcgacgccgatgtcgctctcatcatcttctc 146
>emb|AX052693.1| Sequence 7 from Patent WO0070053
Length = 10617
Score = 63.9 bits (32), Expect = 6e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 304 ctctccgtgctctgcgacgccgaggtcgcgctcatcatcttctc 347
|||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 4862 ctctccgttctctgcgacgccgatgtcgctctcatcatcttctc 4905
>emb|AX506507.1| Sequence 1202 from Patent WO0216655
Length = 633
Score = 63.9 bits (32), Expect = 6e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 304 ctctccgtgctctgcgacgccgaggtcgcgctcatcatcttctc 347
|||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 103 ctctccgttctctgcgacgccgatgtcgctctcatcatcttctc 146
>gb|AC006592.6| Arabidopsis thaliana chromosome 2 clone F14M13 map mi238, complete
sequence
Length = 106949
Score = 63.9 bits (32), Expect = 6e-008
Identities = 41/44 (93%)
Strand = Plus / Minus
Query: 304 ctctccgtgctctgcgacgccgaggtcgcgctcatcatcttctc 347
|||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 13767 ctctccgttctctgcgacgccgatgtcgctctcatcatcttctc 13724
>emb|BX842431.1|CNS0A8GM Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS10ZE07 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1390
Score = 63.9 bits (32), Expect = 6e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 304 ctctccgtgctctgcgacgccgaggtcgcgctcatcatcttctc 347
|||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 616 ctctccgttctctgcgacgccgatgtcgctctcatcatcttctc 659
>emb|BX842440.1|CNS0A8OH Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH56ZH06 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1341
Score = 63.9 bits (32), Expect = 6e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 304 ctctccgtgctctgcgacgccgaggtcgcgctcatcatcttctc 347
|||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 505 ctctccgttctctgcgacgccgatgtcgctctcatcatcttctc 548
>emb|BX842447.1|CNS0A8UX Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB15ZD07 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1460
Score = 63.9 bits (32), Expect = 6e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 304 ctctccgtgctctgcgacgccgaggtcgcgctcatcatcttctc 347
|||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 264 ctctccgttctctgcgacgccgatgtcgctctcatcatcttctc 307
>emb|BX842456.1|CNS0A915 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH84ZA03 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1363
Score = 63.9 bits (32), Expect = 6e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 304 ctctccgtgctctgcgacgccgaggtcgcgctcatcatcttctc 347
|||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 532 ctctccgttctctgcgacgccgatgtcgctctcatcatcttctc 575
>ref|NM_127820.2| Arabidopsis thaliana SVP (SHORT VEGETATIVE PHASE); transcription
factor AT2G22540 (SVP) mRNA, complete cds
Length = 1546
Score = 63.9 bits (32), Expect = 6e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 304 ctctccgtgctctgcgacgccgaggtcgcgctcatcatcttctc 347
|||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 643 ctctccgttctctgcgacgccgatgtcgctctcatcatcttctc 686
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 63.9 bits (32), Expect = 6e-008
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 304 ctctccgtgctctgcgacgccgaggtcgcgctcatcatcttctc 347
|||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct: 9587599 ctctccgttctctgcgacgccgatgtcgctctcatcatcttctc 9587642
Score = 56.0 bits (28), Expect = 2e-005
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 316 tgcgacgccgaggtcgcgctcatcatcttctccggccgcggcaagctctacgagtt 371
||||| ||||| || || |||||||||||||| |||| |||||||||||||||||
Sbjct: 18811641 tgcgatgccgaagttgctctcatcatcttctcaagccgtggcaagctctacgagtt 18811696
Score = 42.1 bits (21), Expect = 0.23
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 220 gagctgaagcggatcgagaacaagatcaa 248
||||||||| |||| ||||||||||||||
Sbjct: 1129637 gagctgaagaggatagagaacaagatcaa 1129665
>gb|AY727601.1| Arabidopsis thaliana ecotype Ita-0 SEPALLATA2 (SEP2) gene, complete
cds
Length = 3294
Score = 60.0 bits (30), Expect = 1e-006
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 313 ctctgcgacgccgaggtcgcgctcatcatcttctccggccgcggcaagctctacgagttc 372
|||||||| || |||||| | |||||| |||||||| ||| ||||||||||||||||||
Sbjct: 1316 ctctgcgatgctgaggtctctctcatcgtcttctccaaccgtggcaagctctacgagttc 1375
Query: 373 ggcagc 378
|||||
Sbjct: 1376 tgcagc 1381
>gb|AY727604.1| Arabidopsis thaliana ecotype Lu-1 SEPALLATA2 (SEP2) gene, complete
cds
Length = 3329
Score = 60.0 bits (30), Expect = 1e-006
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 313 ctctgcgacgccgaggtcgcgctcatcatcttctccggccgcggcaagctctacgagttc 372
|||||||| || |||||| | |||||| |||||||| ||| ||||||||||||||||||
Sbjct: 1351 ctctgcgatgctgaggtctctctcatcgtcttctccaaccgtggcaagctctacgagttc 1410
Query: 373 ggcagc 378
|||||
Sbjct: 1411 tgcagc 1416
>gb|AY727610.1| Arabidopsis thaliana ecotype PHW-33 SEPALLATA2 (SEP2) gene, complete
cds
Length = 3346
Score = 60.0 bits (30), Expect = 1e-006
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 313 ctctgcgacgccgaggtcgcgctcatcatcttctccggccgcggcaagctctacgagttc 372
|||||||| || |||||| | |||||| |||||||| ||| ||||||||||||||||||
Sbjct: 1348 ctctgcgatgctgaggtctctctcatcgtcttctccaaccgtggcaagctctacgagttc 1407
Query: 373 ggcagc 378
|||||
Sbjct: 1408 tgcagc 1413
>gb|AY727614.1| Arabidopsis thaliana ecotype Cha-0 SEPALLATA2 (SEP2) gene, complete
cds
Length = 3329
Score = 60.0 bits (30), Expect = 1e-006
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 313 ctctgcgacgccgaggtcgcgctcatcatcttctccggccgcggcaagctctacgagttc 372
|||||||| || |||||| | |||||| |||||||| ||| ||||||||||||||||||
Sbjct: 1351 ctctgcgatgctgaggtctctctcatcgtcttctccaaccgtggcaagctctacgagttc 1410
Query: 373 ggcagc 378
|||||
Sbjct: 1411 tgcagc 1416
>gb|AY727618.1| Arabidopsis thaliana ecotype Ko-2 SEPALLATA2 (SEP2) gene, complete
cds
Length = 3346
Score = 60.0 bits (30), Expect = 1e-006
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 313 ctctgcgacgccgaggtcgcgctcatcatcttctccggccgcggcaagctctacgagttc 372
|||||||| || |||||| | |||||| |||||||| ||| ||||||||||||||||||
Sbjct: 1348 ctctgcgatgctgaggtctctctcatcgtcttctccaaccgtggcaagctctacgagttc 1407
Query: 373 ggcagc 378
|||||
Sbjct: 1408 tgcagc 1413
>gb|DR750509.1|DR750509 52-L022242-065-008-D07-SeLA MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 008-D07, mRNA sequence
Length = 707
Score = 58.0 bits (29), Expect = 4e-006
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 624 aaagacgcaagttatgatggagcaagtggaagagcttcgcagaacggag 672
||||||||| ||||||||||| ||| ||||||||||||| |||| ||||
Sbjct: 507 aaagacgcaggttatgatggaacaaatggaagagcttcggagaaaggag 555
Score = 50.1 bits (25), Expect = 0.001
Identities = 73/89 (82%)
Strand = Plus / Plus
Query: 284 tgctcaagaaggcctacgagctctccgtgctctgcgacgccgaggtcgcgctcatcatct 343
|||||||||| |||||||| ||||| || || || || || ||||| | ||||| ||||
Sbjct: 173 tgctcaagaaagcctacgaactctctgttctttgtgatgcagaggtttctctcataatct 232
Query: 344 tctccggccgcggcaagctctacgagttc 372
||||| | | ||||||||||||||||||
Sbjct: 233 tctccaccggtggcaagctctacgagttc 261
>gb|DR750510.1|DR750510 52-L022243-065-008-D07-SeLB MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 008-D07, mRNA sequence
Length = 837
Score = 58.0 bits (29), Expect = 4e-006
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 624 aaagacgcaagttatgatggagcaagtggaagagcttcgcagaacggag 672
||||||||| ||||||||||| ||| ||||||||||||| |||| ||||
Sbjct: 386 aaagacgcaggttatgatggaacaaatggaagagcttcggagaaaggag 338
Score = 50.1 bits (25), Expect = 0.001
Identities = 73/89 (82%)
Strand = Plus / Minus
Query: 284 tgctcaagaaggcctacgagctctccgtgctctgcgacgccgaggtcgcgctcatcatct 343
|||||||||| |||||||| ||||| || || || || || ||||| | ||||| ||||
Sbjct: 720 tgctcaagaaagcctacgaactctctgttctttgtgatgcagaggtttctctcataatct 661
Query: 344 tctccggccgcggcaagctctacgagttc 372
||||| | | ||||||||||||||||||
Sbjct: 660 tctccaccggtggcaagctctacgagttc 632
>gb|U20183.1|ATU20183 Arabidopsis thaliana MADS-box protein AGL13 (AGL13) mRNA, complete
cds
Length = 912
Score = 58.0 bits (29), Expect = 4e-006
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 624 aaagacgcaagttatgatggagcaagtggaagagcttcgcagaacggag 672
||||||||| ||||||||||| ||| ||||||||||||| |||| ||||
Sbjct: 442 aaagacgcaggttatgatggaacaaatggaagagcttcggagaaaggag 490
Score = 50.1 bits (25), Expect = 0.001
Identities = 73/89 (82%)
Strand = Plus / Plus
Query: 284 tgctcaagaaggcctacgagctctccgtgctctgcgacgccgaggtcgcgctcatcatct 343
|||||||||| |||||||| ||||| || || || || || ||||| | ||||| ||||
Sbjct: 108 tgctcaagaaagcctacgaactctctgttctttgtgatgcagaggtttctctcataatct 167
Query: 344 tctccggccgcggcaagctctacgagttc 372
||||| | | ||||||||||||||||||
Sbjct: 168 tctccaccggtggcaagctctacgagttc 196
>ref|NM_115976.1| Arabidopsis thaliana AGL13 (AGAMOUS-LIKE 13); DNA binding /
transcription factor AT3G61120 (AGL13) mRNA, complete
cds
Length = 915
Score = 58.0 bits (29), Expect = 4e-006
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 624 aaagacgcaagttatgatggagcaagtggaagagcttcgcagaacggag 672
||||||||| ||||||||||| ||| ||||||||||||| |||| ||||
Sbjct: 442 aaagacgcaggttatgatggaacaaatggaagagcttcggagaaaggag 490
Score = 50.1 bits (25), Expect = 0.001
Identities = 73/89 (82%)
Strand = Plus / Plus
Query: 284 tgctcaagaaggcctacgagctctccgtgctctgcgacgccgaggtcgcgctcatcatct 343
|||||||||| |||||||| ||||| || || || || || ||||| | ||||| ||||
Sbjct: 108 tgctcaagaaagcctacgaactctctgttctttgtgatgcagaggtttctctcataatct 167
Query: 344 tctccggccgcggcaagctctacgagttc 372
||||| | | ||||||||||||||||||
Sbjct: 168 tctccaccggtggcaagctctacgagttc 196
>gb|CW843825.1|CW843825 GT10086.Ds5.02.18.2003.jw81.365 Arabidopsis thaliana Landsberg Ds
insertion lines Arabidopsis thaliana genomic clone
GT10086, DNA sequence
Length = 365
Score = 56.0 bits (28), Expect = 2e-005
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 316 tgcgacgccgaggtcgcgctcatcatcttctccggccgcggcaagctctacgagtt 371
||||| ||||| || || |||||||||||||| |||| |||||||||||||||||
Sbjct: 278 tgcgatgccgaagttgctctcatcatcttctcaagccgtggcaagctctacgagtt 223
>gb|DR751531.1|DR751531 01-L020098-065-001-A01-SeLA MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 001-A01, mRNA sequence
Length = 964
Score = 56.0 bits (28), Expect = 2e-005
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 316 tgcgacgccgaggtcgcgctcatcatcttctccggccgcggcaagctctacgagtt 371
||||| ||||| || || |||||||||||||| |||| |||||||||||||||||
Sbjct: 206 tgcgatgccgaagttgctctcatcatcttctcaagccgtggcaagctctacgagtt 261
>gb|DR751532.1|DR751532 01-L020099-065-001-A01-SeLB MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 001-A01, mRNA sequence
Length = 748
Score = 56.0 bits (28), Expect = 2e-005
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 316 tgcgacgccgaggtcgcgctcatcatcttctccggccgcggcaagctctacgagtt 371
||||| ||||| || || |||||||||||||| |||| |||||||||||||||||
Sbjct: 593 tgcgatgccgaagttgctctcatcatcttctcaagccgtggcaagctctacgagtt 538
>gb|M55554.1|ATHAGL6A Arabidopsis thaliana transcription factor (AGL6) mRNA, complete cds
Length = 1093
Score = 56.0 bits (28), Expect = 2e-005
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 316 tgcgacgccgaggtcgcgctcatcatcttctccggccgcggcaagctctacgagtt 371
||||| ||||| || || |||||||||||||| |||| |||||||||||||||||
Sbjct: 218 tgcgatgccgaagttgctctcatcatcttctcaagccgtggcaagctctacgagtt 273
>gb|AC003680.3| Arabidopsis thaliana chromosome 2 BAC F17K2 genomic sequence, complete
sequence
Length = 91854
Score = 56.0 bits (28), Expect = 2e-005
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 316 tgcgacgccgaggtcgcgctcatcatcttctccggccgcggcaagctctacgagtt 371
||||| ||||| || || |||||||||||||| |||| |||||||||||||||||
Sbjct: 57911 tgcgatgccgaagttgctctcatcatcttctcaagccgtggcaagctctacgagtt 57966
>dbj|AK175241.1| Arabidopsis thaliana mRNA for short vegegative phase protein (SVP),
complete cds, clone: RAFL21-66-O07
Length = 1492
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 304 ctctccgtgctctgcgacgccgaggtcgcgctcatcatcttctc 347
|||||||| ||||||||||||| ||||| ||||||||||||||
Sbjct: 644 ctctccgttctctgcgacgccggtgtcgctctcatcatcttctc 687
>ref|NM_130127.1| Arabidopsis thaliana AGL6; DNA binding / transcription factor
AT2G45650 (AGL6) mRNA, complete cds
Length = 1093
Score = 56.0 bits (28), Expect = 2e-005
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 316 tgcgacgccgaggtcgcgctcatcatcttctccggccgcggcaagctctacgagtt 371
||||| ||||| || || |||||||||||||| |||| |||||||||||||||||
Sbjct: 218 tgcgatgccgaagttgctctcatcatcttctcaagccgtggcaagctctacgagtt 273
>emb|BX001412.1| Arabidopsis thaliana T-DNA flanking sequence GK-355H05-016831,
genomic survey sequence
Length = 578
Score = 52.0 bits (26), Expect = 2e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 626 agacgcaagttatgatggagcaagtggaagagcttcgcagaa 667
||||||| ||||||||||| ||| ||||||||||||| ||||
Sbjct: 207 agacgcaggttatgatggaacaaatggaagagcttcggagaa 248
>gb|BP821241.1|BP821241 BP821241 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-57-F09 5',
mRNA sequence
Length = 396
Score = 52.0 bits (26), Expect = 2e-004
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 313 ctctgcgacgccgaggtcgcgctcatcatcttctccggccgcggcaagctctacgagttc 372
|||||||| || || ||| | |||||| |||||||| ||| ||||||||||||||||||
Sbjct: 120 ctctgcgatgctgaagtctctctcatcgtcttctccaaccgtggcaagctctacgagttc 179
Query: 373 ggcagc 378
|||||
Sbjct: 180 tgcagc 185
>gb|DR750677.1|DR750677 44-L022242-065-008-D06-SeLA MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 008-D06, mRNA sequence
Length = 661
Score = 52.0 bits (26), Expect = 2e-004
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 313 ctctgcgacgccgaggtcgcgctcatcatcttctccggccgcggcaagctctacgagttc 372
|||||||| || || ||| | |||||| |||||||| ||| ||||||||||||||||||
Sbjct: 214 ctctgcgatgctgaagtctctctcatcgtcttctccaaccgtggcaagctctacgagttc 273
Query: 373 ggcagc 378
|||||
Sbjct: 274 tgcagc 279
>gb|M55552.1|ATHAGL4A Arabidopsis thaliana transcription factor (AGL4) mRNA, complete cds
Length = 1348
Score = 52.0 bits (26), Expect = 2e-004
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 313 ctctgcgacgccgaggtcgcgctcatcatcttctccggccgcggcaagctctacgagttc 372
|||||||| || || ||| | |||||| |||||||| ||| ||||||||||||||||||
Sbjct: 450 ctctgcgatgctgaagtctctctcatcgtcttctccaaccgtggcaagctctacgagttc 509
Query: 373 ggcagc 378
|||||
Sbjct: 510 tgcagc 515
>gb|BT004054.1| Arabidopsis thaliana clone RAFL15-21-I11 (R20467) putative floral
homeotic protein AGL4 (At3g02310) mRNA, complete cds
Length = 1325
Score = 52.0 bits (26), Expect = 2e-004
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 313 ctctgcgacgccgaggtcgcgctcatcatcttctccggccgcggcaagctctacgagttc 372
|||||||| || || ||| | |||||| |||||||| ||| ||||||||||||||||||
Sbjct: 462 ctctgcgatgctgaagtctctctcatcgtcttctccaaccgtggcaagctctacgagttc 521
Query: 373 ggcagc 378
|||||
Sbjct: 522 tgcagc 527
>emb|BX284430.1| Arabidopsis thaliana transposon insertion STS SM_3.23453, sequence
tagged site
Length = 125
Score = 52.0 bits (26), Expect = 2e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 626 agacgcaagttatgatggagcaagtggaagagcttcgcagaa 667
||||||| |||||||||| |||| ||||||||||||| ||||
Sbjct: 85 agacgcaggttatgatggggcaaatggaagagcttcggagaa 44
>emb|BX284449.1| Arabidopsis thaliana transposon insertion STS SM_3.23465, sequence
tagged site
Length = 279
Score = 52.0 bits (26), Expect = 2e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 626 agacgcaagttatgatggagcaagtggaagagcttcgcagaa 667
||||||| ||||||||||| ||| ||||||||||||| ||||
Sbjct: 85 agacgcaggttatgatggaacaaatggaagagcttcggagaa 44
>emb|BX293740.1| Arabidopsis thaliana transposon insertion STS SM_3.23390, sequence
tagged site
Length = 310
Score = 52.0 bits (26), Expect = 2e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 626 agacgcaagttatgatggagcaagtggaagagcttcgcagaa 667
||||||| ||||||||||| ||| ||||||||||||| ||||
Sbjct: 85 agacgcaggttatgatggaacaaatggaagagcttcggagaa 44
>emb|BX293752.1| Arabidopsis thaliana transposon insertion STS SM_3.23375, sequence
tagged site
Length = 370
Score = 52.0 bits (26), Expect = 2e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 626 agacgcaagttatgatggagcaagtggaagagcttcgcagaa 667
||||||| ||||||||||| ||| ||||||||||||| ||||
Sbjct: 85 agacgcaggttatgatggaacaaatggaagagcttcggagaa 44
>gb|AC009755.7|ATAC009755 Arabidopsis thaliana chromosome III BAC F14P3 genomic sequence,
complete sequence
Length = 94369
Score = 52.0 bits (26), Expect = 2e-004
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 313 ctctgcgacgccgaggtcgcgctcatcatcttctccggccgcggcaagctctacgagttc 372
|||||||| || || ||| | |||||| |||||||| ||| ||||||||||||||||||
Sbjct: 8305 ctctgcgatgctgaagtctctctcatcgtcttctccaaccgtggcaagctctacgagttc 8364
Query: 373 ggcagc 378
|||||
Sbjct: 8365 tgcagc 8370
>emb|BX823794.1|CNS0A4WO Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS76ZD01 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1312
Score = 52.0 bits (26), Expect = 2e-004
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 313 ctctgcgacgccgaggtcgcgctcatcatcttctccggccgcggcaagctctacgagttc 372
|||||||| || || ||| | |||||| |||||||| ||| ||||||||||||||||||
Sbjct: 396 ctctgcgatgctgaagtctctctcatcgtcttctccaaccgtggcaagctctacgagttc 455
Query: 373 ggcagc 378
|||||
Sbjct: 456 tgcagc 461
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 52.0 bits (26), Expect = 2e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 626 agacgcaagttatgatggagcaagtggaagagcttcgcagaa 667
||||||| ||||||||||| ||| ||||||||||||| ||||
Sbjct: 22577333 agacgcaggttatgatggaacaaatggaagagcttcggagaa 22577292
Score = 50.1 bits (25), Expect = 0.001
Identities = 73/89 (82%)
Strand = Plus / Minus
Query: 284 tgctcaagaaggcctacgagctctccgtgctctgcgacgccgaggtcgcgctcatcatct 343
|||||||||| |||||||| ||||| || || || || || ||||| | ||||| ||||
Sbjct: 22578658 tgctcaagaaagcctacgaactctctgttctttgtgatgcagaggtttctctcataatct 22578599
Query: 344 tctccggccgcggcaagctctacgagttc 372
||||| | | ||||||||||||||||||
Sbjct: 22578598 tctccaccggtggcaagctctacgagttc 22578570
>gb|AY727599.1| Arabidopsis thaliana ecotype Co-1 SEPALLATA2 (SEP2) gene, complete
cds
Length = 3393
Score = 52.0 bits (26), Expect = 2e-004
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 313 ctctgcgacgccgaggtcgcgctcatcatcttctccggccgcggcaagctctacgagttc 372
|||||||| || || ||| | |||||| |||||||| ||| ||||||||||||||||||
Sbjct: 1351 ctctgcgatgctgaagtctctctcatcgtcttctccaaccgtggcaagctctacgagttc 1410
Query: 373 ggcagc 378
|||||
Sbjct: 1411 tgcagc 1416
>gb|AY727600.1| Arabidopsis thaliana ecotype Es-0 SEPALLATA2 (SEP2) gene, complete
cds
Length = 3355
Score = 52.0 bits (26), Expect = 2e-004
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 313 ctctgcgacgccgaggtcgcgctcatcatcttctccggccgcggcaagctctacgagttc 372
|||||||| || || ||| | |||||| |||||||| ||| ||||||||||||||||||
Sbjct: 1339 ctctgcgatgctgaagtctctctcatcgtcttctccaaccgtggcaagctctacgagttc 1398
Query: 373 ggcagc 378
|||||
Sbjct: 1399 tgcagc 1404
>gb|AY727602.1| Arabidopsis thaliana ecotype Kas-1 SEPALLATA2 (SEP2) gene, complete
cds
Length = 3367
Score = 52.0 bits (26), Expect = 2e-004
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 313 ctctgcgacgccgaggtcgcgctcatcatcttctccggccgcggcaagctctacgagttc 372
|||||||| || || ||| | |||||| |||||||| ||| ||||||||||||||||||
Sbjct: 1351 ctctgcgatgctgaagtctctctcatcgtcttctccaaccgtggcaagctctacgagttc 1410
Query: 373 ggcagc 378
|||||
Sbjct: 1411 tgcagc 1416
>gb|AY727603.1| Arabidopsis thaliana ecotype Li-3 SEPALLATA2 (SEP2) gene, complete
cds
Length = 3381
Score = 52.0 bits (26), Expect = 2e-004
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 313 ctctgcgacgccgaggtcgcgctcatcatcttctccggccgcggcaagctctacgagttc 372
|||||||| || || ||| | |||||| |||||||| ||| ||||||||||||||||||
Sbjct: 1351 ctctgcgatgctgaagtctctctcatcgtcttctccaaccgtggcaagctctacgagttc 1410
Query: 373 ggcagc 378
|||||
Sbjct: 1411 tgcagc 1416
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 543,592
Number of Sequences: 1013581
Number of extensions: 543592
Number of successful extensions: 41034
Number of sequences better than 0.5: 85
Number of HSP's better than 0.5 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39583
Number of HSP's gapped (non-prelim): 1451
length of query: 1263
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1243
effective length of database: 888,669,252
effective search space: 1104615880236
effective search space used: 1104615880236
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)