BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= L20621.2.1
(1220 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|B29682.1|B29682 T15L20TFD TAMU Arabidopsis thaliana geno... 42 0.22
gb|AV530124.1|AV530124 AV530124 Arabidopsis thaliana aboveg... 42 0.22
gb|AF277458.1|AF277458 Arabidopsis thaliana LEUNIG (LEUNIG)... 42 0.22
gb|AY058832.1| Arabidopsis thaliana At1g60530/F8A5_7 mRNA, ... 42 0.22
gb|AC002292.1|AC002292 Arabidopsis thaliana BAC F8A5, compl... 42 0.22
emb|BX822487.1|CNS0A759 Arabidopsis thaliana Full-length cD... 42 0.22
emb|BX822733.1|CNS0A7C8 Arabidopsis thaliana Full-length cD... 42 0.22
emb|BX813909.1|CNS0ADTK Arabidopsis thaliana Full-length cD... 42 0.22
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 42 0.22
emb|AL050398.1|ATL23H3 Arabidopsis thaliana DNA chromosome ... 42 0.22
emb|AL161581.2|ATCHRIV77 Arabidopsis thaliana DNA chromosom... 42 0.22
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 42 0.22
ref|NM_119407.2| Arabidopsis thaliana LUG (LEUNIG) AT4G3255... 42 0.22
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 42 0.22
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 42 0.22
>gb|B29682.1|B29682 T15L20TFD TAMU Arabidopsis thaliana genomic clone T15L20, DNA
sequence
Length = 501
Score = 42.1 bits (21), Expect = 0.22
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 59 acagcagcagcaacaacaaca 79
|||||||||||||||||||||
Sbjct: 222 acagcagcagcaacaacaaca 242
>gb|AV530124.1|AV530124 AV530124 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL59e11R 5', mRNA
sequence
Length = 438
Score = 42.1 bits (21), Expect = 0.22
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaacat 80
|||||||||||||||||||||
Sbjct: 204 cagcagcagcaacaacaacat 224
>gb|AF277458.1|AF277458 Arabidopsis thaliana LEUNIG (LEUNIG) mRNA, complete cds
Length = 3360
Score = 42.1 bits (21), Expect = 0.22
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaacat 80
|||||||||||||||||||||
Sbjct: 804 cagcagcagcaacaacaacat 824
>gb|AY058832.1| Arabidopsis thaliana At1g60530/F8A5_7 mRNA, complete cds
Length = 1354
Score = 42.1 bits (21), Expect = 0.22
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1148 gagaaggagagagagaaaact 1168
|||||||||||||||||||||
Sbjct: 754 gagaaggagagagagaaaact 734
>gb|AC002292.1|AC002292 Arabidopsis thaliana BAC F8A5, complete sequence
Length = 120787
Score = 42.1 bits (21), Expect = 0.22
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1148 gagaaggagagagagaaaact 1168
|||||||||||||||||||||
Sbjct: 24234 gagaaggagagagagaaaact 24214
>emb|BX822487.1|CNS0A759 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB40ZF03 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1290
Score = 42.1 bits (21), Expect = 0.22
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1148 gagaaggagagagagaaaact 1168
|||||||||||||||||||||
Sbjct: 571 gagaaggagagagagaaaact 591
>emb|BX822733.1|CNS0A7C8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB60ZA09 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1252
Score = 42.1 bits (21), Expect = 0.22
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1148 gagaaggagagagagaaaact 1168
|||||||||||||||||||||
Sbjct: 557 gagaaggagagagagaaaact 577
>emb|BX813909.1|CNS0ADTK Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB47ZB08 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1667
Score = 42.1 bits (21), Expect = 0.22
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1148 gagaaggagagagagaaaact 1168
|||||||||||||||||||||
Sbjct: 966 gagaaggagagagagaaaact 986
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 42.1 bits (21), Expect = 0.22
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaacat 80
|||||||||||||||||||||
Sbjct: 11622247 cagcagcagcaacaacaacat 11622267
>emb|AL050398.1|ATL23H3 Arabidopsis thaliana DNA chromosome 4, cosmid clone L23H3 (ESSA
project)
Length = 36270
Score = 42.1 bits (21), Expect = 0.22
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaacat 80
|||||||||||||||||||||
Sbjct: 25306 cagcagcagcaacaacaacat 25326
>emb|AL161581.2|ATCHRIV77 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 77
Length = 197252
Score = 42.1 bits (21), Expect = 0.22
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaacat 80
|||||||||||||||||||||
Sbjct: 123475 cagcagcagcaacaacaacat 123495
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 42.1 bits (21), Expect = 0.22
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1148 gagaaggagagagagaaaact 1168
|||||||||||||||||||||
Sbjct: 6541560 gagaaggagagagagaaaact 6541540
>ref|NM_119407.2| Arabidopsis thaliana LUG (LEUNIG) AT4G32551 (LUG) mRNA, complete
cds
Length = 3369
Score = 42.1 bits (21), Expect = 0.22
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaacat 80
|||||||||||||||||||||
Sbjct: 801 cagcagcagcaacaacaacat 821
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 42.1 bits (21), Expect = 0.22
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 cagcagcagcaacaacaacat 80
|||||||||||||||||||||
Sbjct: 15709471 cagcagcagcaacaacaacat 15709491
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 42.1 bits (21), Expect = 0.22
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1148 gagaaggagagagagaaaact 1168
|||||||||||||||||||||
Sbjct: 22303909 gagaaggagagagagaaaact 22303889
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 431,795
Number of Sequences: 1013581
Number of extensions: 431795
Number of successful extensions: 41410
Number of sequences better than 0.5: 15
Number of HSP's better than 0.5 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40609
Number of HSP's gapped (non-prelim): 801
length of query: 1220
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1200
effective length of database: 888,669,252
effective search space: 1066403102400
effective search space used: 1066403102400
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)