BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= C4H2
(1794 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|U71081.1|ATU71081 Arabidopsis thaliana cinnamate-4-hydro... 82 4e-013
gb|U37235.1|ATU37235 Arabidopsis thaliana cinnamate 4-hydro... 82 4e-013
emb|A74281.1| Sequence 3 from Patent WO9401564 82 4e-013
gb|AY065145.1| Arabidopsis thaliana cinnamate-4-hydroxylase... 82 4e-013
gb|BT008875.1| Arabidopsis thaliana At2g30490 mRNA, complet... 82 4e-013
emb|BX819707.1|CNS0AA1Q Arabidopsis thaliana Full-length cD... 82 4e-013
dbj|D78596.1| Arabidopsis thaliana mRNA for trans-cinnamate... 82 4e-013
ref|NM_128601.2| Arabidopsis thaliana ATC4H (CINNAMATE-4-HY... 82 4e-013
emb|BX820902.1|CNS0A9NW Arabidopsis thaliana Full-length cD... 74 9e-011
gb|U71080.1|ATU71080 Arabidopsis thaliana cinnamate-4-hydro... 66 2e-008
gb|U93215.3| Arabidopsis thaliana chromosome 2 BAC T6B20 ge... 66 2e-008
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 66 2e-008
gb|AV785095.1|AV785095 AV785095 RAFL6 Arabidopsis thaliana ... 48 0.005
gb|BU635358.1|BU635358 021A05 Infected Arabidopsis Leaf Ara... 48 0.005
gb|AV823990.1|AV823990 AV823990 RAFL6 Arabidopsis thaliana ... 44 0.081
gb|CF652756.1|CF652756 74-L020579-066-004-D19-SP6P MPIZ-ADI... 44 0.081
gb|BX836455.1|BX836455 BX836455 Arabidopsis thaliana Siliqu... 44 0.081
gb|AV542275.1|AV542275 AV542275 Arabidopsis thaliana roots ... 44 0.081
gb|AV559178.1|AV559178 AV559178 Arabidopsis thaliana green ... 44 0.081
gb|BP797411.1|BP797411 BP797411 RAFL14 Arabidopsis thaliana... 42 0.32
gb|BP798188.1|BP798188 BP798188 RAFL14 Arabidopsis thaliana... 42 0.32
gb|BP798367.1|BP798367 BP798367 RAFL14 Arabidopsis thaliana... 42 0.32
gb|BP798387.1|BP798387 BP798387 RAFL14 Arabidopsis thaliana... 42 0.32
gb|BP799135.1|BP799135 BP799135 RAFL14 Arabidopsis thaliana... 42 0.32
gb|BP799215.1|BP799215 BP799215 RAFL14 Arabidopsis thaliana... 42 0.32
gb|BP801765.1|BP801765 BP801765 RAFL14 Arabidopsis thaliana... 42 0.32
gb|BP807014.1|BP807014 BP807014 RAFL16 Arabidopsis thaliana... 42 0.32
gb|BP815831.1|BP815831 BP815831 RAFL19 Arabidopsis thaliana... 42 0.32
gb|BP827629.1|BP827629 BP827629 RAFL19 Arabidopsis thaliana... 42 0.32
gb|BP830469.1|BP830469 BP830469 RAFL19 Arabidopsis thaliana... 42 0.32
gb|BP831371.1|BP831371 BP831371 RAFL19 Arabidopsis thaliana... 42 0.32
gb|BP843807.1|BP843807 BP843807 RAFL21 Arabidopsis thaliana... 42 0.32
gb|BP845178.1|BP845178 BP845178 RAFL21 Arabidopsis thaliana... 42 0.32
gb|BP854199.1|BP854199 BP854199 RAFL21 Arabidopsis thaliana... 42 0.32
gb|BP860430.1|BP860430 BP860430 RAFL21 Arabidopsis thaliana... 42 0.32
dbj|D78597.1| Arabidopsis thaliana DNA for trans-ciinamate ... 42 0.32
gb|BP832902.1|BP832902 BP832902 RAFL19 Arabidopsis thaliana... 40 1.3
gb|BP859181.1|BP859181 BP859181 RAFL21 Arabidopsis thaliana... 40 1.3
gb|T44874.1|T44874 8137 Lambda-PRL2 Arabidopsis thaliana cD... 38 5.0
gb|BP799937.1|BP799937 BP799937 RAFL14 Arabidopsis thaliana... 38 5.0
gb|BP800155.1|BP800155 BP800155 RAFL14 Arabidopsis thaliana... 38 5.0
gb|BP800553.1|BP800553 BP800553 RAFL14 Arabidopsis thaliana... 38 5.0
gb|BP800981.1|BP800981 BP800981 RAFL14 Arabidopsis thaliana... 38 5.0
gb|BP852553.1|BP852553 BP852553 RAFL21 Arabidopsis thaliana... 38 5.0
gb|BP860485.1|BP860485 BP860485 RAFL21 Arabidopsis thaliana... 38 5.0
gb|BP862251.1|BP862251 BP862251 RAFL21 Arabidopsis thaliana... 38 5.0
gb|DN604475.1|DN604475 JCAt2g04038 Arabidopsis Gateway cDNA... 38 5.0
gb|DR750574.1|DR750574 48-L022242-065-008-H06-SeLA MPIZ-ADI... 38 5.0
gb|DR750575.1|DR750575 48-L022243-065-008-H06-SeLB MPIZ-ADI... 38 5.0
gb|AC007178.6| Arabidopsis thaliana chromosome 2 clone F3L1... 38 5.0
ref|NM_126441.1| Arabidopsis thaliana DNA binding / transcr... 38 5.0
>gb|U71081.1|ATU71081 Arabidopsis thaliana cinnamate-4-hydroxylase (atC4H) mRNA, complete
cds
Length = 1727
Score = 81.8 bits (41), Expect = 4e-013
Identities = 101/121 (83%)
Strand = Plus / Plus
Query: 911 gccattgatcacatactggaggcacagcagaagggtgagatcaacgaggacaacgtgctc 970
|||||||||||||| || || || |||||||||| || |||||||||||||| || ||
Sbjct: 887 gccattgatcacatccttgaagctgagcagaagggagaaatcaacgaggacaatgttctt 946
Query: 971 ttcatcgtcgagaacattaacgttgcagcgatcgagaccacgctgtggtcgatcgagtgg 1030
| ||||||||||||||| || || || ||||| ||||| || ||||||| |||||||||
Sbjct: 947 tacatcgtcgagaacatcaatgtcgccgcgattgagacaacattgtggtctatcgagtgg 1006
Query: 1031 g 1031
|
Sbjct: 1007 g 1007
Score = 48.1 bits (24), Expect = 0.005
Identities = 87/109 (79%)
Strand = Plus / Plus
Query: 1202 gtgccgcacatgaacctccacgacgccaagctcggcggntacgacatccccgccgagagc 1261
||||| |||||||||||||| || || ||||||| || ||||| ||||| || || |||
Sbjct: 1178 gtgcctcacatgaacctccatgatgcgaagctcgctggctacgatatcccagcagaaagc 1237
Query: 1262 aagatcctcgtcaacgcctggtacctcgccaacaaccccgacagytgga 1310
|| ||||| || || || |||| || || ||||||||| |||| ||||
Sbjct: 1238 aaaatccttgttaatgcttggtggctagcaaacaaccccaacagctgga 1286
Score = 44.1 bits (22), Expect = 0.081
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 428 atggtgttcaccgtgtacggcgaccactggcgcaagatgcgccgcatcatgaccgtgccc 487
||||||||||| || |||||||| || ||| | |||||| | | |||||||| || ||
Sbjct: 404 atggtgttcactgtttacggcgagcattggaggaagatgagaagaatcatgacggttcct 463
Query: 488 ttcttcaccaacaa 501
||||||||||||||
Sbjct: 464 ttcttcaccaacaa 477
Score = 42.2 bits (21), Expect = 0.32
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 272 ttcggcgacgtcttcctcctccggatggggcagcgcaacct 312
|||||||| ||||||||||||| ||||| ||||| |||||
Sbjct: 248 ttcggcgatctcttcctcctccgtatgggtcagcgaaacct 288
Score = 38.2 bits (19), Expect = 5.0
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 204 tcttcgggaactggctgcaggtcggcgacgacctcaaccaccg 246
||||||| |||||||| || ||||| || || |||||||||||
Sbjct: 180 tcttcggaaactggcttcaagtcggagatgatctcaaccaccg 222
>gb|U37235.1|ATU37235 Arabidopsis thaliana cinnamate 4-hydroxylase (CYP73A5) mRNA, complete
cds
Length = 1735
Score = 81.8 bits (41), Expect = 4e-013
Identities = 101/121 (83%)
Strand = Plus / Plus
Query: 911 gccattgatcacatactggaggcacagcagaagggtgagatcaacgaggacaacgtgctc 970
|||||||||||||| || || || |||||||||| || |||||||||||||| || ||
Sbjct: 880 gccattgatcacatccttgaagctgagcagaagggagaaatcaacgaggacaatgttctt 939
Query: 971 ttcatcgtcgagaacattaacgttgcagcgatcgagaccacgctgtggtcgatcgagtgg 1030
| ||||||||||||||| || || || ||||| ||||| || ||||||| |||||||||
Sbjct: 940 tacatcgtcgagaacatcaatgtcgccgcgattgagacaacattgtggtctatcgagtgg 999
Query: 1031 g 1031
|
Sbjct: 1000 g 1000
Score = 48.1 bits (24), Expect = 0.005
Identities = 87/109 (79%)
Strand = Plus / Plus
Query: 1202 gtgccgcacatgaacctccacgacgccaagctcggcggntacgacatccccgccgagagc 1261
||||| |||||||||||||| || || ||||||| || ||||| ||||| || || |||
Sbjct: 1171 gtgcctcacatgaacctccatgatgcgaagctcgctggctacgatatcccagcagaaagc 1230
Query: 1262 aagatcctcgtcaacgcctggtacctcgccaacaaccccgacagytgga 1310
|| ||||| || || || |||| || || ||||||||| |||| ||||
Sbjct: 1231 aaaatccttgttaatgcttggtggctagcaaacaaccccaacagctgga 1279
Score = 44.1 bits (22), Expect = 0.081
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 428 atggtgttcaccgtgtacggcgaccactggcgcaagatgcgccgcatcatgaccgtgccc 487
||||||||||| || |||||||| || ||| | |||||| | | |||||||| || ||
Sbjct: 397 atggtgttcactgtttacggcgagcattggaggaagatgagaagaatcatgacggttcct 456
Query: 488 ttcttcaccaacaa 501
||||||||||||||
Sbjct: 457 ttcttcaccaacaa 470
Score = 42.2 bits (21), Expect = 0.32
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 272 ttcggcgacgtcttcctcctccggatggggcagcgcaacct 312
|||||||| ||||||||||||| ||||| ||||| |||||
Sbjct: 241 ttcggcgatctcttcctcctccgtatgggtcagcgtaacct 281
Score = 38.2 bits (19), Expect = 5.0
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 204 tcttcgggaactggctgcaggtcggcgacgacctcaaccaccg 246
||||||| |||||||| || || || || ||||||||||||||
Sbjct: 173 tcttcggaaactggcttcaagtaggagatgacctcaaccaccg 215
>emb|A74281.1| Sequence 3 from Patent WO9401564
Length = 1735
Score = 81.8 bits (41), Expect = 4e-013
Identities = 101/121 (83%)
Strand = Plus / Plus
Query: 911 gccattgatcacatactggaggcacagcagaagggtgagatcaacgaggacaacgtgctc 970
|||||||||||||| || || || |||||||||| || |||||||||||||| || ||
Sbjct: 880 gccattgatcacatccttgaagctgagcagaagggagaaatcaacgaggacaatgttctt 939
Query: 971 ttcatcgtcgagaacattaacgttgcagcgatcgagaccacgctgtggtcgatcgagtgg 1030
| ||||||||||||||| || || || ||||| ||||| || ||||||| |||||||||
Sbjct: 940 tacatcgtcgagaacatcaatgtcgccgcgattgagacaacattgtggtctatcgagtgg 999
Query: 1031 g 1031
|
Sbjct: 1000 g 1000
Score = 48.1 bits (24), Expect = 0.005
Identities = 87/109 (79%)
Strand = Plus / Plus
Query: 1202 gtgccgcacatgaacctccacgacgccaagctcggcggntacgacatccccgccgagagc 1261
||||| |||||||||||||| || || ||||||| || ||||| ||||| || || |||
Sbjct: 1171 gtgcctcacatgaacctccatgatgcgaagctcgctggctacgatatcccagcagaaagc 1230
Query: 1262 aagatcctcgtcaacgcctggtacctcgccaacaaccccgacagytgga 1310
|| ||||| || || || |||| || || ||||||||| |||| ||||
Sbjct: 1231 aaaatccttgttaatgcttggtggctagcaaacaaccccaacagctgga 1279
Score = 44.1 bits (22), Expect = 0.081
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 428 atggtgttcaccgtgtacggcgaccactggcgcaagatgcgccgcatcatgaccgtgccc 487
||||||||||| || |||||||| || ||| | |||||| | | |||||||| || ||
Sbjct: 397 atggtgttcactgtttacggcgagcattggaggaagatgagaagaatcatgacggttcct 456
Query: 488 ttcttcaccaacaa 501
||||||||||||||
Sbjct: 457 ttcttcaccaacaa 470
Score = 42.2 bits (21), Expect = 0.32
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 272 ttcggcgacgtcttcctcctccggatggggcagcgcaacct 312
|||||||| ||||||||||||| ||||| ||||| |||||
Sbjct: 241 ttcggcgatctcttcctcctccgtatgggtcagcgtaacct 281
Score = 38.2 bits (19), Expect = 5.0
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 204 tcttcgggaactggctgcaggtcggcgacgacctcaaccaccg 246
||||||| |||||||| || || || || ||||||||||||||
Sbjct: 173 tcttcggaaactggcttcaagtaggagatgacctcaaccaccg 215
>gb|AY065145.1| Arabidopsis thaliana cinnamate-4-hydroxylase (At2g30490; T6B20.16)
mRNA, complete cds
Length = 1794
Score = 81.8 bits (41), Expect = 4e-013
Identities = 101/121 (83%)
Strand = Plus / Plus
Query: 911 gccattgatcacatactggaggcacagcagaagggtgagatcaacgaggacaacgtgctc 970
|||||||||||||| || || || |||||||||| || |||||||||||||| || ||
Sbjct: 919 gccattgatcacatccttgaagctgagcagaagggagaaatcaacgaggacaatgttctt 978
Query: 971 ttcatcgtcgagaacattaacgttgcagcgatcgagaccacgctgtggtcgatcgagtgg 1030
| ||||||||||||||| || || || ||||| ||||| || ||||||| |||||||||
Sbjct: 979 tacatcgtcgagaacatcaatgtcgccgcgattgagacaacattgtggtctatcgagtgg 1038
Query: 1031 g 1031
|
Sbjct: 1039 g 1039
Score = 48.1 bits (24), Expect = 0.005
Identities = 87/109 (79%)
Strand = Plus / Plus
Query: 1202 gtgccgcacatgaacctccacgacgccaagctcggcggntacgacatccccgccgagagc 1261
||||| |||||||||||||| || || ||||||| || ||||| ||||| || || |||
Sbjct: 1210 gtgcctcacatgaacctccatgatgcgaagctcgctggctacgatatcccagcagaaagc 1269
Query: 1262 aagatcctcgtcaacgcctggtacctcgccaacaaccccgacagytgga 1310
|| ||||| || || || |||| || || ||||||||| |||| ||||
Sbjct: 1270 aaaatccttgttaatgcttggtggctagcaaacaaccccaacagctgga 1318
Score = 44.1 bits (22), Expect = 0.081
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 428 atggtgttcaccgtgtacggcgaccactggcgcaagatgcgccgcatcatgaccgtgccc 487
||||||||||| || |||||||| || ||| | |||||| | | |||||||| || ||
Sbjct: 436 atggtgttcactgtttacggcgagcattggaggaagatgagaagaatcatgacggttcct 495
Query: 488 ttcttcaccaacaa 501
||||||||||||||
Sbjct: 496 ttcttcaccaacaa 509
Score = 42.2 bits (21), Expect = 0.32
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 272 ttcggcgacgtcttcctcctccggatggggcagcgcaacct 312
|||||||| ||||||||||||| ||||| ||||| |||||
Sbjct: 280 ttcggcgatctcttcctcctccgtatgggtcagcgaaacct 320
Score = 38.2 bits (19), Expect = 5.0
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 204 tcttcgggaactggctgcaggtcggcgacgacctcaaccaccg 246
||||||| |||||||| || ||||| || || |||||||||||
Sbjct: 212 tcttcggaaactggcttcaagtcggagatgatctcaaccaccg 254
>gb|BT008875.1| Arabidopsis thaliana At2g30490 mRNA, complete cds
Length = 1518
Score = 81.8 bits (41), Expect = 4e-013
Identities = 101/121 (83%)
Strand = Plus / Plus
Query: 911 gccattgatcacatactggaggcacagcagaagggtgagatcaacgaggacaacgtgctc 970
|||||||||||||| || || || |||||||||| || |||||||||||||| || ||
Sbjct: 832 gccattgatcacatccttgaagctgagcagaagggagaaatcaacgaggacaatgttctt 891
Query: 971 ttcatcgtcgagaacattaacgttgcagcgatcgagaccacgctgtggtcgatcgagtgg 1030
| ||||||||||||||| || || || ||||| ||||| || ||||||| |||||||||
Sbjct: 892 tacatcgtcgagaacatcaatgtcgccgcgattgagacaacattgtggtctatcgagtgg 951
Query: 1031 g 1031
|
Sbjct: 952 g 952
Score = 48.1 bits (24), Expect = 0.005
Identities = 87/109 (79%)
Strand = Plus / Plus
Query: 1202 gtgccgcacatgaacctccacgacgccaagctcggcggntacgacatccccgccgagagc 1261
||||| |||||||||||||| || || ||||||| || ||||| ||||| || || |||
Sbjct: 1123 gtgcctcacatgaacctccatgatgcgaagctcgctggctacgatatcccagcagaaagc 1182
Query: 1262 aagatcctcgtcaacgcctggtacctcgccaacaaccccgacagytgga 1310
|| ||||| || || || |||| || || ||||||||| |||| ||||
Sbjct: 1183 aaaatccttgttaatgcttggtggctagcaaacaaccccaacagctgga 1231
Score = 44.1 bits (22), Expect = 0.081
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 428 atggtgttcaccgtgtacggcgaccactggcgcaagatgcgccgcatcatgaccgtgccc 487
||||||||||| || |||||||| || ||| | |||||| | | |||||||| || ||
Sbjct: 349 atggtgttcactgtttacggcgagcattggaggaagatgagaagaatcatgacggttcct 408
Query: 488 ttcttcaccaacaa 501
||||||||||||||
Sbjct: 409 ttcttcaccaacaa 422
Score = 42.2 bits (21), Expect = 0.32
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 272 ttcggcgacgtcttcctcctccggatggggcagcgcaacct 312
|||||||| ||||||||||||| ||||| ||||| |||||
Sbjct: 193 ttcggcgatctcttcctcctccgtatgggtcagcgaaacct 233
Score = 38.2 bits (19), Expect = 5.0
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 204 tcttcgggaactggctgcaggtcggcgacgacctcaaccaccg 246
||||||| |||||||| || ||||| || || |||||||||||
Sbjct: 125 tcttcggaaactggcttcaagtcggagatgatctcaaccaccg 167
>emb|BX819707.1|CNS0AA1Q Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS19ZE10 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1751
Score = 81.8 bits (41), Expect = 4e-013
Identities = 101/121 (83%)
Strand = Plus / Plus
Query: 911 gccattgatcacatactggaggcacagcagaagggtgagatcaacgaggacaacgtgctc 970
|||||||||||||| || || || |||||||||| || |||||||||||||| || ||
Sbjct: 906 gccattgatcacatccttgaagctgagcagaagggagaaatcaacgaggacaatgttctt 965
Query: 971 ttcatcgtcgagaacattaacgttgcagcgatcgagaccacgctgtggtcgatcgagtgg 1030
| ||||||||||||||| || || || ||||| ||||| || ||||||| |||||||||
Sbjct: 966 tacatcgtcgagaacatcaatgtcgccgcgattgagacaacattgtggtctatcgagtgg 1025
Query: 1031 g 1031
|
Sbjct: 1026 g 1026
Score = 48.1 bits (24), Expect = 0.005
Identities = 87/109 (79%)
Strand = Plus / Plus
Query: 1202 gtgccgcacatgaacctccacgacgccaagctcggcggntacgacatccccgccgagagc 1261
||||| |||||||||||||| || || ||||||| || ||||| ||||| || || |||
Sbjct: 1197 gtgcctcacatgaacctccatgatgcgaagctcgctggctacgatatcccagcagaaagc 1256
Query: 1262 aagatcctcgtcaacgcctggtacctcgccaacaaccccgacagytgga 1310
|| ||||| || || || |||| || || ||||||||| |||| ||||
Sbjct: 1257 aaaatccttgttaatgcttggtggctagcaaacaaccccaacagctgga 1305
Score = 44.1 bits (22), Expect = 0.081
Identities = 178/230 (77%)
Strand = Plus / Plus
Query: 272 ttcggcgacgtcttcctcctccggatggggcagcgcaacctggtggtggtctcgtcgccg 331
|||||||| ||||||||||||| ||||| ||||| ||||| || || ||||| || |||
Sbjct: 266 ttcggcgatctcttcctcctccgtatgggtcagcgaaacctagtcgtcgtctcctcaccg 325
Query: 332 ccgctggcgcgggaggtgctccacacgcagggcgtggagttcggctcccgcacccgcaac 391
||| | ||| ||||||| ||| || ||||| ||||| || ||| | || | |||
Sbjct: 326 gatctgacaaaggaagtgctcctcactcaaggcgttgagtttggatccagaacgagaaac 385
Query: 392 gtggtcttcgacatcttcacggacaaggggcaggacatggtgttcaccgtgtacggcgac 451
|| || |||||||| ||||| | || || || || ||||||||||| || ||||||||
Sbjct: 386 gtcgtgttcgacattttcaccgggaaaggtcaagatatggtgttcactgtttacggcgag 445
Query: 452 cactggcgcaagatgcgccgcatcatgaccgtgcccttcttcaccaacaa 501
|| ||| | |||||| | | |||||||| || || ||||||||||||||
Sbjct: 446 cattggaggaagatgagaagaatcatgacggttcctttcttcaccaacaa 495
Score = 38.2 bits (19), Expect = 5.0
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 204 tcttcgggaactggctgcaggtcggcgacgacctcaaccaccg 246
||||||| |||||||| || ||||| || || |||||||||||
Sbjct: 198 tcttcggaaactggcttcaagtcggagatgatctcaaccaccg 240
>dbj|D78596.1| Arabidopsis thaliana mRNA for trans-cinnamate 4-hydroxylase, complete
cds
Length = 1711
Score = 81.8 bits (41), Expect = 4e-013
Identities = 101/121 (83%)
Strand = Plus / Plus
Query: 911 gccattgatcacatactggaggcacagcagaagggtgagatcaacgaggacaacgtgctc 970
|||||||||||||| || || || |||||||||| || |||||||||||||| || ||
Sbjct: 888 gccattgatcacatccttgaagctgagcagaagggagaaatcaacgaggacaatgttctt 947
Query: 971 ttcatcgtcgagaacattaacgttgcagcgatcgagaccacgctgtggtcgatcgagtgg 1030
| ||||||||||||||| || || || ||||| ||||| || ||||||| |||||||||
Sbjct: 948 tacatcgtcgagaacatcaatgtcgccgcgattgagacaacattgtggtctatcgagtgg 1007
Query: 1031 g 1031
|
Sbjct: 1008 g 1008
Score = 48.1 bits (24), Expect = 0.005
Identities = 87/109 (79%)
Strand = Plus / Plus
Query: 1202 gtgccgcacatgaacctccacgacgccaagctcggcggntacgacatccccgccgagagc 1261
||||| |||||||||||||| || || ||||||| || ||||| ||||| || || |||
Sbjct: 1179 gtgcctcacatgaacctccatgatgcgaagctcgctggctacgatatcccagcagaaagc 1238
Query: 1262 aagatcctcgtcaacgcctggtacctcgccaacaaccccgacagytgga 1310
|| ||||| || || || |||| || || ||||||||| |||| ||||
Sbjct: 1239 aaaatccttgttaatgcttggtggctagcaaacaaccccaacagctgga 1287
Score = 44.1 bits (22), Expect = 0.081
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 428 atggtgttcaccgtgtacggcgaccactggcgcaagatgcgccgcatcatgaccgtgccc 487
||||||||||| || |||||||| || ||| | |||||| | | |||||||| || ||
Sbjct: 405 atggtgttcactgtttacggcgagcattggaggaagatgagaagaatcatgacggttcct 464
Query: 488 ttcttcaccaacaa 501
||||||||||||||
Sbjct: 465 ttcttcaccaacaa 478
Score = 42.2 bits (21), Expect = 0.32
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 272 ttcggcgacgtcttcctcctccggatggggcagcgcaacct 312
|||||||| ||||||||||||| ||||| ||||| |||||
Sbjct: 249 ttcggcgatctcttcctcctccgtatgggtcagcgaaacct 289
Score = 38.2 bits (19), Expect = 5.0
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 204 tcttcgggaactggctgcaggtcggcgacgacctcaaccaccg 246
||||||| |||||||| || ||||| || || |||||||||||
Sbjct: 181 tcttcggaaactggcttcaagtcggagatgatctcaaccaccg 223
>ref|NM_128601.2| Arabidopsis thaliana ATC4H (CINNAMATE-4-HYDROXYLASE) AT2G30490
(ATC4H) mRNA, complete cds
Length = 1803
Score = 81.8 bits (41), Expect = 4e-013
Identities = 101/121 (83%)
Strand = Plus / Plus
Query: 911 gccattgatcacatactggaggcacagcagaagggtgagatcaacgaggacaacgtgctc 970
|||||||||||||| || || || |||||||||| || |||||||||||||| || ||
Sbjct: 919 gccattgatcacatccttgaagctgagcagaagggagaaatcaacgaggacaatgttctt 978
Query: 971 ttcatcgtcgagaacattaacgttgcagcgatcgagaccacgctgtggtcgatcgagtgg 1030
| ||||||||||||||| || || || ||||| ||||| || ||||||| |||||||||
Sbjct: 979 tacatcgtcgagaacatcaatgtcgccgcgattgagacaacattgtggtctatcgagtgg 1038
Query: 1031 g 1031
|
Sbjct: 1039 g 1039
Score = 48.1 bits (24), Expect = 0.005
Identities = 87/109 (79%)
Strand = Plus / Plus
Query: 1202 gtgccgcacatgaacctccacgacgccaagctcggcggntacgacatccccgccgagagc 1261
||||| |||||||||||||| || || ||||||| || ||||| ||||| || || |||
Sbjct: 1210 gtgcctcacatgaacctccatgatgcgaagctcgctggctacgatatcccagcagaaagc 1269
Query: 1262 aagatcctcgtcaacgcctggtacctcgccaacaaccccgacagytgga 1310
|| ||||| || || || |||| || || ||||||||| |||| ||||
Sbjct: 1270 aaaatccttgttaatgcttggtggctagcaaacaaccccaacagctgga 1318
Score = 44.1 bits (22), Expect = 0.081
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 428 atggtgttcaccgtgtacggcgaccactggcgcaagatgcgccgcatcatgaccgtgccc 487
||||||||||| || |||||||| || ||| | |||||| | | |||||||| || ||
Sbjct: 436 atggtgttcactgtttacggcgagcattggaggaagatgagaagaatcatgacggttcct 495
Query: 488 ttcttcaccaacaa 501
||||||||||||||
Sbjct: 496 ttcttcaccaacaa 509
Score = 42.2 bits (21), Expect = 0.32
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 272 ttcggcgacgtcttcctcctccggatggggcagcgcaacct 312
|||||||| ||||||||||||| ||||| ||||| |||||
Sbjct: 280 ttcggcgatctcttcctcctccgtatgggtcagcgaaacct 320
Score = 38.2 bits (19), Expect = 5.0
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 204 tcttcgggaactggctgcaggtcggcgacgacctcaaccaccg 246
||||||| |||||||| || ||||| || || |||||||||||
Sbjct: 212 tcttcggaaactggcttcaagtcggagatgatctcaaccaccg 254
>emb|BX820902.1|CNS0A9NW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH7ZF08 of Hormone Treated Callus of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1679
Score = 73.9 bits (37), Expect = 9e-011
Identities = 100/121 (82%)
Strand = Plus / Plus
Query: 911 gccattgatcacatactggaggcacagcagaagggtgagatcaacgaggacaacgtgctc 970
||||||||| |||| || || || |||||||||| || |||||||||||||| || ||
Sbjct: 883 gccattgataacatccttgaagctgagcagaagggagaaatcaacgaggacaatgttctt 942
Query: 971 ttcatcgtcgagaacattaacgttgcagcgatcgagaccacgctgtggtcgatcgagtgg 1030
| ||||||||||||||| || || || ||||| ||||| || ||||||| |||||||||
Sbjct: 943 tacatcgtcgagaacatcaatgtcgccgcgattgagacaacattgtggtctatcgagtgg 1002
Query: 1031 g 1031
|
Sbjct: 1003 g 1003
Score = 48.1 bits (24), Expect = 0.005
Identities = 87/109 (79%)
Strand = Plus / Plus
Query: 1202 gtgccgcacatgaacctccacgacgccaagctcggcggntacgacatccccgccgagagc 1261
||||| |||||||||||||| || || ||||||| || ||||| ||||| || || |||
Sbjct: 1174 gtgcctcacatgaacctccatgatgcgaagctcgctggctacgatatcccagcagaaagc 1233
Query: 1262 aagatcctcgtcaacgcctggtacctcgccaacaaccccgacagytgga 1310
|| ||||| || || || |||| || || ||||||||| |||| ||||
Sbjct: 1234 aaaatccttgttaatgcttggtggctagcaaacaaccccaacagctgga 1282
Score = 44.1 bits (22), Expect = 0.081
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 428 atggtgttcaccgtgtacggcgaccactggcgcaagatgcgccgcatcatgaccgtgccc 487
||||||||||| || |||||||| || ||| | |||||| | | |||||||| || ||
Sbjct: 400 atggtgttcactgtttacggcgagcattggaggaagatgagaagaatcatgacggttcct 459
Query: 488 ttcttcaccaacaa 501
||||||||||||||
Sbjct: 460 ttcttcaccaacaa 473
Score = 42.2 bits (21), Expect = 0.32
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 272 ttcggcgacgtcttcctcctccggatggggcagcgcaacct 312
|||||||| ||||||||||||| ||||| ||||| |||||
Sbjct: 244 ttcggcgatctcttcctcctccgtatgggtcagcgaaacct 284
Score = 38.2 bits (19), Expect = 5.0
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 204 tcttcgggaactggctgcaggtcggcgacgacctcaaccaccg 246
||||||| |||||||| || ||||| || || |||||||||||
Sbjct: 176 tcttcggaaactggcttcaagtcggagatgatctcaaccaccg 218
>gb|U71080.1|ATU71080 Arabidopsis thaliana cinnamate-4-hydroxylase (atC4H) gene, complete
cds
Length = 5432
Score = 66.0 bits (33), Expect = 2e-008
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 911 gccattgatcacatactggaggcacagcagaagggtgagatcaacgaggacaacgtgctc 970
|||||||||||||| || || || |||||||||| || |||||||||||||| || ||
Sbjct: 3868 gccattgatcacatccttgaagctgagcagaagggagaaatcaacgaggacaatgttctt 3927
Query: 971 ttcatcgtcgagaacat 987
| |||||||||||||||
Sbjct: 3928 tacatcgtcgagaacat 3944
Score = 48.1 bits (24), Expect = 0.005
Identities = 87/109 (79%)
Strand = Plus / Plus
Query: 1202 gtgccgcacatgaacctccacgacgccaagctcggcggntacgacatccccgccgagagc 1261
||||| |||||||||||||| || || ||||||| || ||||| ||||| || || |||
Sbjct: 4379 gtgcctcacatgaacctccatgatgcgaagctcgctggctacgatatcccagcagaaagc 4438
Query: 1262 aagatcctcgtcaacgcctggtacctcgccaacaaccccgacagytgga 1310
|| ||||| || || || |||| || || ||||||||| |||| ||||
Sbjct: 4439 aaaatccttgttaatgcttggtggctagcaaacaaccccaacagctgga 4487
Score = 44.1 bits (22), Expect = 0.081
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 428 atggtgttcaccgtgtacggcgaccactggcgcaagatgcgccgcatcatgaccgtgccc 487
||||||||||| || |||||||| || ||| | |||||| | | |||||||| || ||
Sbjct: 3300 atggtgttcactgtttacggcgagcattggaggaagatgagaagaatcatgacggttcct 3359
Query: 488 ttcttcaccaacaa 501
||||||||||||||
Sbjct: 3360 ttcttcaccaacaa 3373
Score = 42.2 bits (21), Expect = 0.32
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 272 ttcggcgacgtcttcctcctccggatggggcagcgcaacct 312
|||||||| ||||||||||||| ||||| ||||| |||||
Sbjct: 3144 ttcggcgatctcttcctcctccgtatgggtcagcgtaacct 3184
>gb|U93215.3| Arabidopsis thaliana chromosome 2 BAC T6B20 genomic sequence, complete
sequence
Length = 104861
Score = 66.0 bits (33), Expect = 2e-008
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 911 gccattgatcacatactggaggcacagcagaagggtgagatcaacgaggacaacgtgctc 970
|||||||||||||| || || || |||||||||| || |||||||||||||| || ||
Sbjct: 58609 gccattgatcacatccttgaagctgagcagaagggagaaatcaacgaggacaatgttctt 58668
Query: 971 ttcatcgtcgagaacat 987
| |||||||||||||||
Sbjct: 58669 tacatcgtcgagaacat 58685
Score = 48.1 bits (24), Expect = 0.005
Identities = 87/109 (79%)
Strand = Plus / Plus
Query: 1202 gtgccgcacatgaacctccacgacgccaagctcggcggntacgacatccccgccgagagc 1261
||||| |||||||||||||| || || ||||||| || ||||| ||||| || || |||
Sbjct: 59120 gtgcctcacatgaacctccatgatgcgaagctcgctggctacgatatcccagcagaaagc 59179
Query: 1262 aagatcctcgtcaacgcctggtacctcgccaacaaccccgacagytgga 1310
|| ||||| || || || |||| || || ||||||||| |||| ||||
Sbjct: 59180 aaaatccttgttaatgcttggtggctagcaaacaaccccaacagctgga 59228
Score = 44.1 bits (22), Expect = 0.081
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 428 atggtgttcaccgtgtacggcgaccactggcgcaagatgcgccgcatcatgaccgtgccc 487
||||||||||| || |||||||| || ||| | |||||| | | |||||||| || ||
Sbjct: 58041 atggtgttcactgtttacggcgagcattggaggaagatgagaagaatcatgacggttcct 58100
Query: 488 ttcttcaccaacaa 501
||||||||||||||
Sbjct: 58101 ttcttcaccaacaa 58114
Score = 42.2 bits (21), Expect = 0.32
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 272 ttcggcgacgtcttcctcctccggatggggcagcgcaacct 312
|||||||| ||||||||||||| ||||| ||||| |||||
Sbjct: 57885 ttcggcgatctcttcctcctccgtatgggtcagcgaaacct 57925
Score = 38.2 bits (19), Expect = 5.0
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 204 tcttcgggaactggctgcaggtcggcgacgacctcaaccaccg 246
||||||| |||||||| || ||||| || || |||||||||||
Sbjct: 57817 tcttcggaaactggcttcaagtcggagatgatctcaaccaccg 57859
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 66.0 bits (33), Expect = 2e-008
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 911 gccattgatcacatactggaggcacagcagaagggtgagatcaacgaggacaacgtgctc 970
|||||||||||||| || || || |||||||||| || |||||||||||||| || ||
Sbjct: 13001844 gccattgatcacatccttgaagctgagcagaagggagaaatcaacgaggacaatgttctt 13001785
Query: 971 ttcatcgtcgagaacat 987
| |||||||||||||||
Sbjct: 13001784 tacatcgtcgagaacat 13001768
Score = 48.1 bits (24), Expect = 0.005
Identities = 87/109 (79%)
Strand = Plus / Minus
Query: 1202 gtgccgcacatgaacctccacgacgccaagctcggcggntacgacatccccgccgagagc 1261
||||| |||||||||||||| || || ||||||| || ||||| ||||| || || |||
Sbjct: 13001333 gtgcctcacatgaacctccatgatgcgaagctcgctggctacgatatcccagcagaaagc 13001274
Query: 1262 aagatcctcgtcaacgcctggtacctcgccaacaaccccgacagytgga 1310
|| ||||| || || || |||| || || ||||||||| |||| ||||
Sbjct: 13001273 aaaatccttgttaatgcttggtggctagcaaacaaccccaacagctgga 13001225
Score = 44.1 bits (22), Expect = 0.081
Identities = 61/74 (82%)
Strand = Plus / Minus
Query: 428 atggtgttcaccgtgtacggcgaccactggcgcaagatgcgccgcatcatgaccgtgccc 487
||||||||||| || |||||||| || ||| | |||||| | | |||||||| || ||
Sbjct: 13002412 atggtgttcactgtttacggcgagcattggaggaagatgagaagaatcatgacggttcct 13002353
Query: 488 ttcttcaccaacaa 501
||||||||||||||
Sbjct: 13002352 ttcttcaccaacaa 13002339
Score = 42.2 bits (21), Expect = 0.32
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 272 ttcggcgacgtcttcctcctccggatggggcagcgcaacct 312
|||||||| ||||||||||||| ||||| ||||| |||||
Sbjct: 13002568 ttcggcgatctcttcctcctccgtatgggtcagcgaaacct 13002528
Score = 38.2 bits (19), Expect = 5.0
Identities = 37/43 (86%)
Strand = Plus / Minus
Query: 204 tcttcgggaactggctgcaggtcggcgacgacctcaaccaccg 246
||||||| |||||||| || ||||| || || |||||||||||
Sbjct: 13002636 tcttcggaaactggcttcaagtcggagatgatctcaaccaccg 13002594
Score = 38.2 bits (19), Expect = 5.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 801 tctgcaaggaggtcaagga 819
|||||||||||||||||||
Sbjct: 1332168 tctgcaaggaggtcaagga 1332186
>gb|AV785095.1|AV785095 AV785095 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-11-J16 3', mRNA
sequence
Length = 663
Score = 48.1 bits (24), Expect = 0.005
Identities = 87/109 (79%)
Strand = Plus / Minus
Query: 1202 gtgccgcacatgaacctccacgacgccaagctcggcggntacgacatccccgccgagagc 1261
||||| |||||||||||||| || || ||||||| || ||||| ||||| || || |||
Sbjct: 586 gtgcctcacatgaacctccatgatgcgaagctcgctggctacgatatcccagcagaaagc 527
Query: 1262 aagatcctcgtcaacgcctggtacctcgccaacaaccccgacagytgga 1310
|| ||||| || || || |||| || || ||||||||| |||| ||||
Sbjct: 526 aaaatccttgttaatgcttggtggctagcaaacaaccccaacagctgga 478
>gb|BU635358.1|BU635358 021A05 Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA
sequence
Length = 706
Score = 48.1 bits (24), Expect = 0.005
Identities = 87/109 (79%)
Strand = Plus / Plus
Query: 1202 gtgccgcacatgaacctccacgacgccaagctcggcggntacgacatccccgccgagagc 1261
||||| |||||||||||||| || || ||||||| || ||||| ||||| || || |||
Sbjct: 243 gtgcctcacatgaacctccatgatgcgaagctcgctggctacgatatcccagcagaaagc 302
Query: 1262 aagatcctcgtcaacgcctggtacctcgccaacaaccccgacagytgga 1310
|| ||||| || || || |||| || || ||||||||| |||| ||||
Sbjct: 303 aaaatccttgttaatgcttggtggctagcaaacaaccccaacagctgga 351
Score = 46.1 bits (23), Expect = 0.021
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 973 catcgtcgagaacattaacgttgcagcgatcgagaccacgctgtggtcgatcgagtggg 1031
||||||||||||||| || || || ||||| ||||| || ||||||| ||||||||||
Sbjct: 14 catcgtcgagaacatcaatgtcgccgcgattgagacaacattgtggtctatcgagtggg 72
>gb|AV823990.1|AV823990 AV823990 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-11-J16 5',
mRNA sequence
Length = 661
Score = 44.1 bits (22), Expect = 0.081
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 428 atggtgttcaccgtgtacggcgaccactggcgcaagatgcgccgcatcatgaccgtgccc 487
||||||||||| || |||||||| || ||| | |||||| | | |||||||| || ||
Sbjct: 433 atggtgttcactgtttacggcgagcattggaggaagatgagaagaatcatgacggttcct 492
Query: 488 ttcttcaccaacaa 501
||||||||||||||
Sbjct: 493 ttcttcaccaacaa 506
Score = 42.2 bits (21), Expect = 0.32
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 272 ttcggcgacgtcttcctcctccggatggggcagcgcaacct 312
|||||||| ||||||||||||| ||||| ||||| |||||
Sbjct: 277 ttcggcgatctcttcctcctccgtatgggtcagcgaaacct 317
Score = 38.2 bits (19), Expect = 5.0
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 204 tcttcgggaactggctgcaggtcggcgacgacctcaaccaccg 246
||||||| |||||||| || ||||| || || |||||||||||
Sbjct: 209 tcttcggaaactggcttcaagtcggagatgatctcaaccaccg 251
>gb|CF652756.1|CF652756 74-L020579-066-004-D19-SP6P MPIZ-ADIS-066 Arabidopsis thaliana cDNA
clone MPIZp2001D194Q 5-PRIME, mRNA sequence
Length = 842
Score = 44.1 bits (22), Expect = 0.081
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 428 atggtgttcaccgtgtacggcgaccactggcgcaagatgcgccgcatcatgaccgtgccc 487
||||||||||| || |||||||| || ||| | |||||| | | |||||||| || ||
Sbjct: 413 atggtgttcactgtttacggcgagcattggaggaagatgagaagaatcatgacggttcct 472
Query: 488 ttcttcaccaacaa 501
||||||||||||||
Sbjct: 473 ttcttcaccaacaa 486
Score = 42.2 bits (21), Expect = 0.32
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 272 ttcggcgacgtcttcctcctccggatggggcagcgcaacct 312
|||||||| ||||||||||||| ||||| ||||| |||||
Sbjct: 257 ttcggcgatctcttcctcctccgtatgggtcagcgaaacct 297
Score = 38.2 bits (19), Expect = 5.0
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 204 tcttcgggaactggctgcaggtcggcgacgacctcaaccaccg 246
||||||| |||||||| || ||||| || || |||||||||||
Sbjct: 189 tcttcggaaactggcttcaagtcggagatgatctcaaccaccg 231
>gb|BX836455.1|BX836455 BX836455 Arabidopsis thaliana Silique Col-0 Arabidopsis thaliana cDNA
clone GSLTSIL29ZC07 3PRIM, mRNA sequence
Length = 1064
Score = 44.1 bits (22), Expect = 0.081
Identities = 67/82 (81%)
Strand = Plus / Minus
Query: 950 atcaacgaggacaacgtgctcttcatcgtcgagaacattaacgttgcagcgatcgagacc 1009
|||||||||||||| || || |||||||||| ||||||| || || ||||| |||||
Sbjct: 797 atcaacgaggacaatgttcttaacatcgtcgagtacattaatgtcgccgcgattgagaca 738
Query: 1010 acgctgtggtcgatcgagtggg 1031
|| |||| || ||||||||||
Sbjct: 737 acattgtgctctatcgagtggg 716
>gb|AV542275.1|AV542275 AV542275 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ181d12F 3', mRNA sequence
Length = 619
Score = 44.1 bits (22), Expect = 0.081
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 428 atggtgttcaccgtgtacggcgaccactggcgcaagatgcgccgcatcatgaccgtgccc 487
||||||||||| || |||||||| || ||| | |||||| | | |||||||| || ||
Sbjct: 240 atggtgttcactgtttacggcgagcattggaggaagatgagaagaatcatgacggttcct 299
Query: 488 ttcttcaccaacaa 501
||||||||||||||
Sbjct: 300 ttcttcaccaacaa 313
Score = 42.2 bits (21), Expect = 0.32
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 272 ttcggcgacgtcttcctcctccggatggggcagcgcaacct 312
|||||||| ||||||||||||| ||||| ||||| |||||
Sbjct: 84 ttcggcgatctcttcctcctccgtatgggtcagcgaaacct 124
Score = 38.2 bits (19), Expect = 5.0
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 204 tcttcgggaactggctgcaggtcggcgacgacctcaaccaccg 246
||||||| |||||||| || ||||| || || |||||||||||
Sbjct: 16 tcttcggaaactggcttcaagtcggagatgatctcaaccaccg 58
>gb|AV559178.1|AV559178 AV559178 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ112f04F 3', mRNA sequence
Length = 604
Score = 44.1 bits (22), Expect = 0.081
Identities = 61/74 (82%)
Strand = Plus / Minus
Query: 428 atggtgttcaccgtgtacggcgaccactggcgcaagatgcgccgcatcatgaccgtgccc 487
||||||||||| || |||||||| || ||| | |||||| | | |||||||| || ||
Sbjct: 342 atggtgttcactgtttacggcgagcattggaggaagatgagaagaatcatgacggttcct 283
Query: 488 ttcttcaccaacaa 501
||||||||||||||
Sbjct: 282 ttcttcaccaacaa 269
Score = 42.2 bits (21), Expect = 0.32
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 272 ttcggcgacgtcttcctcctccggatggggcagcgcaacct 312
|||||||| ||||||||||||| ||||| ||||| |||||
Sbjct: 498 ttcggcgatctcttcctcctccgtatgggtcagcgaaacct 458
Score = 38.2 bits (19), Expect = 5.0
Identities = 37/43 (86%)
Strand = Plus / Minus
Query: 204 tcttcgggaactggctgcaggtcggcgacgacctcaaccaccg 246
||||||| |||||||| || ||||| || || |||||||||||
Sbjct: 566 tcttcggaaactggcttcaagtcggagatgatctcaaccaccg 524
>gb|BP797411.1|BP797411 BP797411 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-03-E22 5',
mRNA sequence
Length = 397
Score = 42.2 bits (21), Expect = 0.32
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 272 ttcggcgacgtcttcctcctccggatggggcagcgcaacct 312
|||||||| ||||||||||||| ||||| ||||| |||||
Sbjct: 275 ttcggcgatctcttcctcctccgtatgggtcagcgaaacct 315
>gb|BP798188.1|BP798188 BP798188 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-06-F09 5',
mRNA sequence
Length = 388
Score = 42.2 bits (21), Expect = 0.32
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 272 ttcggcgacgtcttcctcctccggatggggcagcgcaacct 312
|||||||| ||||||||||||| ||||| ||||| |||||
Sbjct: 276 ttcggcgatctcttcctcctccgtatgggtcagcgaaacct 316
Score = 38.2 bits (19), Expect = 5.0
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 204 tcttcgggaactggctgcaggtcggcgacgacctcaaccaccg 246
||||||| |||||||| || ||||| || || |||||||||||
Sbjct: 208 tcttcggaaactggcttcaagtcggagatgatctcaaccaccg 250
>gb|BP798367.1|BP798367 BP798367 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-07-A11 5',
mRNA sequence
Length = 402
Score = 42.2 bits (21), Expect = 0.32
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 272 ttcggcgacgtcttcctcctccggatggggcagcgcaacct 312
|||||||| ||||||||||||| ||||| ||||| |||||
Sbjct: 276 ttcggcgatctcttcctcctccgtatgggtcagcgaaacct 316
Score = 38.2 bits (19), Expect = 5.0
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 204 tcttcgggaactggctgcaggtcggcgacgacctcaaccaccg 246
||||||| |||||||| || ||||| || || |||||||||||
Sbjct: 208 tcttcggaaactggcttcaagtcggagatgatctcaaccaccg 250
>gb|BP798387.1|BP798387 BP798387 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-07-B13 5',
mRNA sequence
Length = 404
Score = 42.2 bits (21), Expect = 0.32
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 272 ttcggcgacgtcttcctcctccggatggggcagcgcaacct 312
|||||||| ||||||||||||| ||||| ||||| |||||
Sbjct: 276 ttcggcgatctcttcctcctccgtatgggtcagcgaaacct 316
Score = 38.2 bits (19), Expect = 5.0
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 204 tcttcgggaactggctgcaggtcggcgacgacctcaaccaccg 246
||||||| |||||||| || ||||| || || |||||||||||
Sbjct: 208 tcttcggaaactggcttcaagtcggagatgatctcaaccaccg 250
>gb|BP799135.1|BP799135 BP799135 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-09-N07 5',
mRNA sequence
Length = 396
Score = 42.2 bits (21), Expect = 0.32
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 272 ttcggcgacgtcttcctcctccggatggggcagcgcaacct 312
|||||||| ||||||||||||| ||||| ||||| |||||
Sbjct: 276 ttcggcgatctcttcctcctccgtatgggtcagcgaaacct 316
>gb|BP799215.1|BP799215 BP799215 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-10-C16 5',
mRNA sequence
Length = 418
Score = 42.2 bits (21), Expect = 0.32
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 272 ttcggcgacgtcttcctcctccggatggggcagcgcaacct 312
|||||||| ||||||||||||| ||||| ||||| |||||
Sbjct: 278 ttcggcgatctcttcctcctccgtatgggtcagcgaaacct 318
Score = 38.2 bits (19), Expect = 5.0
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 204 tcttcgggaactggctgcaggtcggcgacgacctcaaccaccg 246
||||||| |||||||| || ||||| || || |||||||||||
Sbjct: 210 tcttcggaaactggcttcaagtcggagatgatctcaaccaccg 252
>gb|BP801765.1|BP801765 BP801765 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-21-E05 5',
mRNA sequence
Length = 373
Score = 42.2 bits (21), Expect = 0.32
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 272 ttcggcgacgtcttcctcctccggatggggcagcgcaacct 312
|||||||| ||||||||||||| ||||| ||||| |||||
Sbjct: 276 ttcggcgatctcttcctcctccgtatgggtcagcgaaacct 316
Score = 38.2 bits (19), Expect = 5.0
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 204 tcttcgggaactggctgcaggtcggcgacgacctcaaccaccg 246
||||||| |||||||| || ||||| || || |||||||||||
Sbjct: 208 tcttcggaaactggcttcaagtcggagatgatctcaaccaccg 250
>gb|BP807014.1|BP807014 BP807014 RAFL16 Arabidopsis thaliana cDNA clone RAFL24-12-A05 5',
mRNA sequence
Length = 398
Score = 42.2 bits (21), Expect = 0.32
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 272 ttcggcgacgtcttcctcctccggatggggcagcgcaacct 312
|||||||| ||||||||||||| ||||| ||||| |||||
Sbjct: 278 ttcggcgatctcttcctcctccgtatgggtcagcgaaacct 318
>gb|BP815831.1|BP815831 BP815831 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-40-A19 5',
mRNA sequence
Length = 426
Score = 42.2 bits (21), Expect = 0.32
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 272 ttcggcgacgtcttcctcctccggatggggcagcgcaacct 312
|||||||| ||||||||||||| ||||| ||||| |||||
Sbjct: 279 ttcggcgatctcttcctcctccgtatgggtcagcgaaacct 319
Score = 38.2 bits (19), Expect = 5.0
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 204 tcttcgggaactggctgcaggtcggcgacgacctcaaccaccg 246
||||||| |||||||| || ||||| || || |||||||||||
Sbjct: 211 tcttcggaaactggcttcaagtcggagatgatctcaaccaccg 253
>gb|BP827629.1|BP827629 BP827629 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-76-C22 5',
mRNA sequence
Length = 384
Score = 42.2 bits (21), Expect = 0.32
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 272 ttcggcgacgtcttcctcctccggatggggcagcgcaacct 312
|||||||| ||||||||||||| ||||| ||||| |||||
Sbjct: 279 ttcggcgatctcttcctcctccgtatgggtcagcgaaacct 319
>gb|BP830469.1|BP830469 BP830469 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-85-H14 5',
mRNA sequence
Length = 415
Score = 42.2 bits (21), Expect = 0.32
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 272 ttcggcgacgtcttcctcctccggatggggcagcgcaacct 312
|||||||| ||||||||||||| ||||| ||||| |||||
Sbjct: 280 ttcggcgatctcttcctcctccgtatgggtcagcgaaacct 320
>gb|BP831371.1|BP831371 BP831371 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-88-M08 5',
mRNA sequence
Length = 413
Score = 42.2 bits (21), Expect = 0.32
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 272 ttcggcgacgtcttcctcctccggatggggcagcgcaacct 312
|||||||| ||||||||||||| ||||| ||||| |||||
Sbjct: 278 ttcggcgatctcttcctcctccgtatgggtcagcgaaacct 318
Score = 38.2 bits (19), Expect = 5.0
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 204 tcttcgggaactggctgcaggtcggcgacgacctcaaccaccg 246
||||||| |||||||| || ||||| || || |||||||||||
Sbjct: 210 tcttcggaaactggcttcaagtcggagatgatctcaaccaccg 252
>gb|BP843807.1|BP843807 BP843807 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-88-B17 5',
mRNA sequence
Length = 396
Score = 42.2 bits (21), Expect = 0.32
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 272 ttcggcgacgtcttcctcctccggatggggcagcgcaacct 312
|||||||| ||||||||||||| ||||| ||||| |||||
Sbjct: 276 ttcggcgatctcttcctcctccgtatgggtcagcgaaacct 316
Score = 38.2 bits (19), Expect = 5.0
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 204 tcttcgggaactggctgcaggtcggcgacgacctcaaccaccg 246
||||||| |||||||| || ||||| || || |||||||||||
Sbjct: 208 tcttcggaaactggcttcaagtcggagatgatctcaaccaccg 250
>gb|BP845178.1|BP845178 BP845178 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-92-M18 5',
mRNA sequence
Length = 389
Score = 42.2 bits (21), Expect = 0.32
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 272 ttcggcgacgtcttcctcctccggatggggcagcgcaacct 312
|||||||| ||||||||||||| ||||| ||||| |||||
Sbjct: 278 ttcggcgatctcttcctcctccgtatgggtcagcgaaacct 318
Score = 38.2 bits (19), Expect = 5.0
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 204 tcttcgggaactggctgcaggtcggcgacgacctcaaccaccg 246
||||||| |||||||| || ||||| || || |||||||||||
Sbjct: 210 tcttcggaaactggcttcaagtcggagatgatctcaaccaccg 252
>gb|BP854199.1|BP854199 BP854199 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-60-M21 5',
mRNA sequence
Length = 391
Score = 42.2 bits (21), Expect = 0.32
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 272 ttcggcgacgtcttcctcctccggatggggcagcgcaacct 312
|||||||| ||||||||||||| ||||| ||||| |||||
Sbjct: 276 ttcggcgatctcttcctcctccgtatgggtcagcgaaacct 316
Score = 38.2 bits (19), Expect = 5.0
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 204 tcttcgggaactggctgcaggtcggcgacgacctcaaccaccg 246
||||||| |||||||| || ||||| || || |||||||||||
Sbjct: 208 tcttcggaaactggcttcaagtcggagatgatctcaaccaccg 250
>gb|BP860430.1|BP860430 BP860430 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-44-B14 5',
mRNA sequence
Length = 394
Score = 42.2 bits (21), Expect = 0.32
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 272 ttcggcgacgtcttcctcctccggatggggcagcgcaacct 312
|||||||| ||||||||||||| ||||| ||||| |||||
Sbjct: 276 ttcggcgatctcttcctcctccgtatgggtcagcgaaacct 316
Score = 38.2 bits (19), Expect = 5.0
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 204 tcttcgggaactggctgcaggtcggcgacgacctcaaccaccg 246
||||||| |||||||| || ||||| || || |||||||||||
Sbjct: 208 tcttcggaaactggcttcaagtcggagatgatctcaaccaccg 250
>dbj|D78597.1| Arabidopsis thaliana DNA for trans-ciinamate 4-hydroxylase, partial
cds
Length = 1202
Score = 42.2 bits (21), Expect = 0.32
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 272 ttcggcgacgtcttcctcctccggatggggcagcgcaacct 312
|||||||| ||||||||||||| ||||| ||||| |||||
Sbjct: 1101 ttcggcgatctcttcctcctccgtatgggtcagcgaaacct 1141
Score = 38.2 bits (19), Expect = 5.0
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 204 tcttcgggaactggctgcaggtcggcgacgacctcaaccaccg 246
||||||| |||||||| || ||||| || || |||||||||||
Sbjct: 1033 tcttcggaaactggcttcaagtcggagatgatctcaaccaccg 1075
>gb|BP832902.1|BP832902 BP832902 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-94-C12 5',
mRNA sequence
Length = 385
Score = 40.2 bits (20), Expect = 1.3
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 273 tcggcgacgtcttcctcctccggatggggcagcgcaacct 312
||||||| ||||||||||||| ||||| ||||| |||||
Sbjct: 276 tcggcgatctcttcctcctccgtatgggtcagcgaaacct 315
>gb|BP859181.1|BP859181 BP859181 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-39-M08 5',
mRNA sequence
Length = 351
Score = 40.2 bits (20), Expect = 1.3
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 204 tcttcgggaactggctgcaggtcggcgacgacctcaaccaccgcaacctcgc 255
||||||| |||||||| || ||||| || || ||||||||||| || |||||
Sbjct: 208 tcttcggaaactggcttcaagtcggagatgatctcaaccaccgtaatctcgc 259
>gb|T44874.1|T44874 8137 Lambda-PRL2 Arabidopsis thaliana cDNA clone 126E1T7, mRNA
sequence
Length = 339
Score = 38.2 bits (19), Expect = 5.0
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 204 tcttcgggaactggctgcaggtcggcgacgacctcaaccaccg 246
||||||| |||||||| || ||||| || || |||||||||||
Sbjct: 180 tcttcggaaactggcttcaagtcggagatgatctcaaccaccg 222
>gb|BP799937.1|BP799937 BP799937 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-13-B02 5',
mRNA sequence
Length = 376
Score = 38.2 bits (19), Expect = 5.0
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 204 tcttcgggaactggctgcaggtcggcgacgacctcaaccaccg 246
||||||| |||||||| || ||||| || || |||||||||||
Sbjct: 208 tcttcggaaactggcttcaagtcggagatgatctcaaccaccg 250
>gb|BP800155.1|BP800155 BP800155 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-14-C04 5',
mRNA sequence
Length = 405
Score = 38.2 bits (19), Expect = 5.0
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 204 tcttcgggaactggctgcaggtcggcgacgacctcaaccaccg 246
||||||| |||||||| || ||||| || || |||||||||||
Sbjct: 212 tcttcggaaactggcttcaagtcggagatgatctcaaccaccg 254
>gb|BP800553.1|BP800553 BP800553 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-15-O06 5',
mRNA sequence
Length = 370
Score = 38.2 bits (19), Expect = 5.0
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 204 tcttcgggaactggctgcaggtcggcgacgacctcaaccaccg 246
||||||| |||||||| || ||||| || || |||||||||||
Sbjct: 208 tcttcggaaactggcttcaagtcggagatgatctcaaccaccg 250
>gb|BP800981.1|BP800981 BP800981 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-17-L12 5',
mRNA sequence
Length = 389
Score = 38.2 bits (19), Expect = 5.0
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 204 tcttcgggaactggctgcaggtcggcgacgacctcaaccaccg 246
||||||| |||||||| || ||||| || || |||||||||||
Sbjct: 208 tcttcggaaactggcttcaagtcggagatgatctcaaccaccg 250
>gb|BP852553.1|BP852553 BP852553 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-20-E15 5',
mRNA sequence
Length = 363
Score = 38.2 bits (19), Expect = 5.0
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 204 tcttcgggaactggctgcaggtcggcgacgacctcaaccaccg 246
||||||| |||||||| || ||||| || || |||||||||||
Sbjct: 208 tcttcggaaactggcttcaagtcggagatgatctcaaccaccg 250
>gb|BP860485.1|BP860485 BP860485 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-44-E17 5',
mRNA sequence
Length = 388
Score = 38.2 bits (19), Expect = 5.0
Identities = 37/43 (86%)
Strand = Plus / Plus
Query: 204 tcttcgggaactggctgcaggtcggcgacgacctcaaccaccg 246
||||||| |||||||| || ||||| || || |||||||||||
Sbjct: 210 tcttcggaaactggcttcaagtcggagatgatctcaaccaccg 252
>gb|BP862251.1|BP862251 BP862251 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-62-F08 5',
mRNA sequence
Length = 389
Score = 38.2 bits (19), Expect = 5.0
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 282 tcttcctcctccggatggggcagcgcaacct 312
||||||||||||| ||||| ||||| |||||
Sbjct: 286 tcttcctcctccgtatgggtcagcgaaacct 316
>gb|DN604475.1|DN604475 JCAt2g04038 Arabidopsis Gateway cDNA Library Arabidopsis thaliana
cDNA 3', mRNA sequence
Length = 376
Score = 38.2 bits (19), Expect = 5.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 801 tctgcaaggaggtcaagga 819
|||||||||||||||||||
Sbjct: 248 tctgcaaggaggtcaagga 266
>gb|DR750574.1|DR750574 48-L022242-065-008-H06-SeLA MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 008-H06, mRNA sequence
Length = 822
Score = 38.2 bits (19), Expect = 5.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 801 tctgcaaggaggtcaagga 819
|||||||||||||||||||
Sbjct: 356 tctgcaaggaggtcaagga 374
>gb|DR750575.1|DR750575 48-L022243-065-008-H06-SeLB MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 008-H06, mRNA sequence
Length = 578
Score = 38.2 bits (19), Expect = 5.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 801 tctgcaaggaggtcaagga 819
|||||||||||||||||||
Sbjct: 364 tctgcaaggaggtcaagga 346
>gb|AC007178.6| Arabidopsis thaliana chromosome 2 clone F3L12 map mi320, complete
sequence
Length = 116149
Score = 38.2 bits (19), Expect = 5.0
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 801 tctgcaaggaggtcaagga 819
|||||||||||||||||||
Sbjct: 72069 tctgcaaggaggtcaagga 72051
>ref|NM_126441.1| Arabidopsis thaliana DNA binding / transcription factor AT2G04038
mRNA, complete cds
Length = 501
Score = 38.2 bits (19), Expect = 5.0
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 801 tctgcaaggaggtcaagga 819
|||||||||||||||||||
Sbjct: 253 tctgcaaggaggtcaagga 271
Database: At_nucl_with_EST.fasta
Posted date: May 2, 2006 2:53 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 553,300
Number of Sequences: 1013581
Number of extensions: 553300
Number of successful extensions: 41313
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40832
Number of HSP's gapped (non-prelim): 481
length of query: 1794
length of database: 908,940,872
effective HSP length: 21
effective length of query: 1773
effective length of database: 887,655,671
effective search space: 1573813504683
effective search space used: 1573813504683
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)