BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AB021176.2.1
(1318 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 48 0.004
gb|AC025417.4|AC025417 Genomic sequence for Arabidopsis tha... 48 0.004
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 48 0.004
gb|AC025416.4|AC025416 Genomic sequence for Arabidopsis tha... 46 0.015
ref|NM_101121.1| Arabidopsis thaliana unknown protein AT1G1... 46 0.015
emb|AL952368.1| Arabidopsis thaliana T-DNA flanking sequenc... 42 0.24
emb|CR356336.1| Arabidopsis thaliana T-DNA flanking sequenc... 42 0.24
emb|CR356337.1| Arabidopsis thaliana T-DNA flanking sequenc... 42 0.24
gb|AF080118.1|F8M12 Arabidopsis thaliana BAC F8M12 42 0.24
gb|G72072.1|G72072 At-8BJ-008 Arabidopsis genomic DNA (B. J... 42 0.24
gb|G72113.1|G72113 At-8.5BJ-569 Arabidopsis genomic DNA (B.... 42 0.24
gb|AY133683.1| Arabidopsis thaliana clone C103110 unknown p... 42 0.24
emb|BX832414.1|CNS0A127 Arabidopsis thaliana Full-length cD... 42 0.24
emb|AJ270058.1| Arabidopsis thaliana DNA chromosome 4, shor... 42 0.24
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 42 0.24
dbj|AB012240.1| Arabidopsis thaliana genomic DNA, chromosom... 42 0.24
dbj|AB015472.1| Arabidopsis thaliana genomic DNA, chromosom... 42 0.24
gb|BT014982.1| Arabidopsis thaliana At5g11460 gene, complet... 42 0.24
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 42 0.24
emb|AL049525.1|ATF25I24 Arabidopsis thaliana DNA chromosome... 42 0.24
emb|AL161518.2|ATCHRIV30 Arabidopsis thaliana DNA chromosom... 42 0.24
emb|AL161497.2|ATCHRIV9 Arabidopsis thaliana DNA chromosome... 42 0.24
emb|AL163815.1|ATF15N18 Arabidopsis thaliana DNA chromosome... 42 0.24
gb|AC005142.2| Arabidopsis thaliana BAC T5L23 from chromoso... 42 0.24
ref|NM_123888.1| Arabidopsis thaliana ATP binding / transme... 42 0.24
ref|NM_117162.2| Arabidopsis thaliana unknown protein AT4G1... 42 0.24
ref|NM_121184.2| Arabidopsis thaliana unknown protein AT5G1... 42 0.24
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 42 0.24
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 42 0.24
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 48.1 bits (24), Expect = 0.004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 187 cacaaggagaaggagaaggagaag 210
||||||||||||||||||||||||
Sbjct: 4312478 cacaaggagaaggagaaggagaag 4312455
Score = 46.1 bits (23), Expect = 0.015
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 188 acaaggagaaggagaaggagaag 210
|||||||||||||||||||||||
Sbjct: 4260886 acaaggagaaggagaaggagaag 4260908
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 4312469 aaggagaaggagaaggagaag 4312449
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 4312463 aaggagaaggagaaggagaag 4312443
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 4260894 aaggagaaggagaaggagaag 4260914
>gb|AC025417.4|AC025417 Genomic sequence for Arabidopsis thaliana BAC T12C24 from chromosome I,
complete sequence
Length = 106142
Score = 48.1 bits (24), Expect = 0.004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 187 cacaaggagaaggagaaggagaag 210
||||||||||||||||||||||||
Sbjct: 62998 cacaaggagaaggagaaggagaag 62975
Score = 46.1 bits (23), Expect = 0.015
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 188 acaaggagaaggagaaggagaag 210
|||||||||||||||||||||||
Sbjct: 11406 acaaggagaaggagaaggagaag 11428
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 62989 aaggagaaggagaaggagaag 62969
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 62983 aaggagaaggagaaggagaag 62963
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 11414 aaggagaaggagaaggagaag 11434
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 48.1 bits (24), Expect = 0.004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 187 cacaaggagaaggagaaggagaag 210
||||||||||||||||||||||||
Sbjct: 4312654 cacaaggagaaggagaaggagaag 4312631
Score = 46.1 bits (23), Expect = 0.015
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 188 acaaggagaaggagaaggagaag 210
|||||||||||||||||||||||
Sbjct: 4261062 acaaggagaaggagaaggagaag 4261084
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 4312645 aaggagaaggagaaggagaag 4312625
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 4312639 aaggagaaggagaaggagaag 4312619
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 4261070 aaggagaaggagaaggagaag 4261090
>gb|AC025416.4|AC025416 Genomic sequence for Arabidopsis thaliana BAC F5O11 from chromosome I,
complete sequence
Length = 118374
Score = 46.1 bits (23), Expect = 0.015
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 188 acaaggagaaggagaaggagaag 210
|||||||||||||||||||||||
Sbjct: 90389 acaaggagaaggagaaggagaag 90411
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 90397 aaggagaaggagaaggagaag 90417
>ref|NM_101121.1| Arabidopsis thaliana unknown protein AT1G12490 mRNA, complete cds
Length = 1059
Score = 46.1 bits (23), Expect = 0.015
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 188 acaaggagaaggagaaggagaag 210
|||||||||||||||||||||||
Sbjct: 254 acaaggagaaggagaaggagaag 276
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 262 aaggagaaggagaaggagaag 282
>emb|AL952368.1| Arabidopsis thaliana T-DNA flanking sequence GK-342H01-016163,
genomic survey sequence
Length = 601
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 304 aaggagaaggagaaggagaag 284
>emb|CR356336.1| Arabidopsis thaliana T-DNA flanking sequence GK-596B05-025556,
genomic survey sequence
Length = 464
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 149 aaggagaaggagaaggagaag 129
>emb|CR356337.1| Arabidopsis thaliana T-DNA flanking sequence GK-596B05-025557,
genomic survey sequence
Length = 460
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 149 aaggagaaggagaaggagaag 129
>gb|AF080118.1|F8M12 Arabidopsis thaliana BAC F8M12
Length = 103673
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 41565 aaggagaaggagaaggagaag 41585
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 41559 aaggagaaggagaaggagaag 41579
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 41553 aaggagaaggagaaggagaag 41573
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 41547 aaggagaaggagaaggagaag 41567
>gb|G72072.1|G72072 At-8BJ-008 Arabidopsis genomic DNA (B. Jordan) Arabidopsis thaliana
STS genomic, sequence tagged site
Length = 485
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 51 aaggagaaggagaaggagaag 31
>gb|G72113.1|G72113 At-8.5BJ-569 Arabidopsis genomic DNA (B. Jordan) Arabidopsis
thaliana STS genomic, sequence tagged site
Length = 630
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 451 aaggagaaggagaaggagaag 471
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 445 aaggagaaggagaaggagaag 465
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 439 aaggagaaggagaaggagaag 459
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 433 aaggagaaggagaaggagaag 453
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 427 aaggagaaggagaaggagaag 447
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 421 aaggagaaggagaaggagaag 441
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 415 aaggagaaggagaaggagaag 435
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 409 aaggagaaggagaaggagaag 429
>gb|AY133683.1| Arabidopsis thaliana clone C103110 unknown protein (At4g10930) mRNA,
complete cds
Length = 2986
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 2408 aaggagaaggagaaggagaag 2428
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 2402 aaggagaaggagaaggagaag 2422
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 2396 aaggagaaggagaaggagaag 2416
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 2390 aaggagaaggagaaggagaag 2410
>emb|BX832414.1|CNS0A127 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH71ZC03 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1392
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 88 aaggagaaggagaaggagaag 68
>emb|AJ270058.1| Arabidopsis thaliana DNA chromosome 4, short arm
Length = 3052119
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 1595252 aaggagaaggagaaggagaag 1595232
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 1595246 aaggagaaggagaaggagaag 1595226
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 2618560 aaggagaaggagaaggagaag 2618540
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 2618554 aaggagaaggagaaggagaag 2618534
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 2618548 aaggagaaggagaaggagaag 2618528
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 2618542 aaggagaaggagaaggagaag 2618522
>dbj|AB012240.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K18C1
Length = 71618
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 191 aggagaaggagaaggagaagc 211
|||||||||||||||||||||
Sbjct: 40508 aggagaaggagaaggagaagc 40488
>dbj|AB015472.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAE1
Length = 54632
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 3464 aaggagaaggagaaggagaag 3444
>gb|BT014982.1| Arabidopsis thaliana At5g11460 gene, complete cds
Length = 1373
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 71 aaggagaaggagaaggagaag 51
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 191 aggagaaggagaaggagaagc 211
|||||||||||||||||||||
Sbjct: 16600153 aggagaaggagaaggagaagc 16600133
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 3471814 aaggagaaggagaaggagaag 3471834
>emb|AL049525.1|ATF25I24 Arabidopsis thaliana DNA chromosome 4, BAC clone F25I24 (ESSA project)
Length = 95799
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 62177 aaggagaaggagaaggagaag 62157
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 62171 aaggagaaggagaaggagaag 62151
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 62165 aaggagaaggagaaggagaag 62145
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 62159 aaggagaaggagaaggagaag 62139
>emb|AL161518.2|ATCHRIV30 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 30
Length = 198136
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 143201 aaggagaaggagaaggagaag 143181
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 143195 aaggagaaggagaaggagaag 143175
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 143189 aaggagaaggagaaggagaag 143169
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 143183 aaggagaaggagaaggagaag 143163
>emb|AL161497.2|ATCHRIV9 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 9
Length = 159629
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 57156 aaggagaaggagaaggagaag 57136
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 57150 aaggagaaggagaaggagaag 57130
>emb|AL163815.1|ATF15N18 Arabidopsis thaliana DNA chromosome 5, BAC clone F15N18 (ESSA project)
Length = 101665
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 20650 aaggagaaggagaaggagaag 20670
>gb|AC005142.2| Arabidopsis thaliana BAC T5L23 from chromosome IV, near 19 cM, complete
sequence
Length = 116448
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 35878 aaggagaaggagaaggagaag 35858
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 35872 aaggagaaggagaaggagaag 35852
>ref|NM_123888.1| Arabidopsis thaliana ATP binding / transmembrane receptor AT5G45200
mRNA, complete cds
Length = 3786
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 191 aggagaaggagaaggagaagc 211
|||||||||||||||||||||
Sbjct: 588 aggagaaggagaaggagaagc 608
>ref|NM_117162.2| Arabidopsis thaliana unknown protein AT4G10930 mRNA, complete cds
Length = 2986
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 2408 aaggagaaggagaaggagaag 2428
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 2402 aaggagaaggagaaggagaag 2422
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 2396 aaggagaaggagaaggagaag 2416
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 2390 aaggagaaggagaaggagaag 2410
>ref|NM_121184.2| Arabidopsis thaliana unknown protein AT5G11460 mRNA, complete cds
Length = 1439
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 88 aaggagaaggagaaggagaag 68
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 6705825 aaggagaaggagaaggagaag 6705805
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 6705819 aaggagaaggagaaggagaag 6705799
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 6705813 aaggagaaggagaaggagaag 6705793
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 6705807 aaggagaaggagaaggagaag 6705787
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 1596436 aaggagaaggagaaggagaag 1596416
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 1596430 aaggagaaggagaaggagaag 1596410
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 24455487 aaggagaaggagaaggagaag 24455467
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 191 aggagaaggagaaggagaagc 211
|||||||||||||||||||||
Sbjct: 18304659 aggagaaggagaaggagaagc 18304639
Score = 42.1 bits (21), Expect = 0.24
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 190 aaggagaaggagaaggagaag 210
|||||||||||||||||||||
Sbjct: 3658845 aaggagaaggagaaggagaag 3658865
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 365,748
Number of Sequences: 1013581
Number of extensions: 365748
Number of successful extensions: 30578
Number of sequences better than 0.5: 29
Number of HSP's better than 0.5 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28798
Number of HSP's gapped (non-prelim): 1747
length of query: 1318
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1298
effective length of database: 888,669,252
effective search space: 1153492689096
effective search space used: 1153492689096
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)