BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 9232502.2.1
(560 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CL480219.1|CL480219 SAIL_320_B10.v1 SAIL Collection Arab... 46 0.006
gb|CL483612.1|CL483612 SAIL_384_B05.v1 SAIL Collection Arab... 42 0.10
gb|CL493532.1|CL493532 SAIL_581_B09.v2 SAIL Collection Arab... 42 0.10
gb|CL499796.1|CL499796 SAIL_673_D10.v1 SAIL Collection Arab... 42 0.10
gb|CL481910.1|CL481910 SAIL_350_E05.v1 SAIL Collection Arab... 40 0.40
gb|CL505751.1|CL505751 SAIL_754_F08.v2 SAIL Collection Arab... 40 0.40
>gb|CL480219.1|CL480219 SAIL_320_B10.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_320_B10.v1, DNA sequence
Length = 1127
Score = 46.1 bits (23), Expect = 0.006
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 424 ccgccgcgcccgcgcccgagcccgacg 450
|||||||||||||||||| ||||||||
Sbjct: 652 ccgccgcgcccgcgcccgcgcccgacg 678
>gb|CL483612.1|CL483612 SAIL_384_B05.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_384_B05.v1, DNA sequence
Length = 917
Score = 42.1 bits (21), Expect = 0.10
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 419 cgcgtccgccgcgcccgcgcc 439
|||||||||||||||||||||
Sbjct: 837 cgcgtccgccgcgcccgcgcc 817
>gb|CL493532.1|CL493532 SAIL_581_B09.v2 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_581_B09.v2, DNA sequence
Length = 1876
Score = 42.1 bits (21), Expect = 0.10
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 419 cgcgtccgccgcgcccgcgcc 439
|||||||||||||||||||||
Sbjct: 816 cgcgtccgccgcgcccgcgcc 796
>gb|CL499796.1|CL499796 SAIL_673_D10.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_673_D10.v1, DNA sequence
Length = 1052
Score = 42.1 bits (21), Expect = 0.10
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 410 cggcggcgccgcgtccgccgcgcccgcgc 438
||||||||||||| ||||||||| |||||
Sbjct: 1008 cggcggcgccgcgcccgccgcgcgcgcgc 1036
>gb|CL481910.1|CL481910 SAIL_350_E05.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_350_E05.v1, DNA sequence
Length = 956
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 420 gcgtccgccgcgcccgcgcc 439
||||||||||||||||||||
Sbjct: 880 gcgtccgccgcgcccgcgcc 899
>gb|CL505751.1|CL505751 SAIL_754_F08.v2 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_754_F08.v2, DNA sequence
Length = 964
Score = 40.1 bits (20), Expect = 0.40
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 418 ccgcgtccgccgcgcccgcgcccg 441
|||||||| |||||||||||||||
Sbjct: 686 ccgcgtcccccgcgcccgcgcccg 709
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 105,668
Number of Sequences: 1013581
Number of extensions: 105668
Number of successful extensions: 8014
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8006
Number of HSP's gapped (non-prelim): 7
length of query: 560
length of database: 908,940,872
effective HSP length: 20
effective length of query: 540
effective length of database: 888,669,252
effective search space: 479881396080
effective search space used: 479881396080
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)