BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 9196052.2.1
(771 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CL493138.1|CL493138 SAIL_574_G06.v1 SAIL Collection Arab... 42 0.14
emb|CR770399.1| Arabidopsis thaliana T-DNA flanking sequenc... 40 0.55
emb|CR770400.1| Arabidopsis thaliana T-DNA flanking sequenc... 40 0.55
gb|CW798245.1|CW798245 WiscDsLox397E05 Arabidopsis thaliana... 40 0.55
gb|AC084820.13| Arabidopsis thaliana chromosome 1 clone T2P... 40 0.55
dbj|AB013396.1| Arabidopsis thaliana genomic DNA, chromosom... 40 0.55
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 40 0.55
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 40 0.55
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 40 0.55
gb|CL512253.1|CL512253 SAIL_857_F09.v2 SAIL Collection Arab... 38 2.2
gb|CL514333.1|CL514333 SAIL_888_C06.v2 SAIL Collection Arab... 38 2.2
gb|B61147.1|B61147 T20O2TR TAMU Arabidopsis thaliana genomi... 36 8.6
emb|AL093356.1|CNS00WB2 Arabidopsis thaliana genome survey ... 36 8.6
gb|CL462311.1|CL462311 SAIL_1162_B08.v1 SAIL Collection Ara... 36 8.6
gb|CL477635.1|CL477635 SAIL_278_A01.v1 SAIL Collection Arab... 36 8.6
gb|Z37477.1|Z37477 ATTS3896 Strasbourg-A Arabidopsis thalia... 36 8.6
gb|AA394619.1|AA394619 26402 Lambda-PRL2 Arabidopsis thalia... 36 8.6
gb|T45887.1|T45887 9150 Lambda-PRL2 Arabidopsis thaliana cD... 36 8.6
gb|AV795995.1|AV795995 AV795995 RAFL9 Arabidopsis thaliana ... 36 8.6
gb|AV797857.1|AV797857 AV797857 RAFL9 Arabidopsis thaliana ... 36 8.6
gb|AV804048.1|AV804048 AV804048 RAFL9 Arabidopsis thaliana ... 36 8.6
gb|AV806004.1|AV806004 AV806004 RAFL9 Arabidopsis thaliana ... 36 8.6
gb|AV816250.1|AV816250 AV816250 RAFL9 Arabidopsis thaliana ... 36 8.6
gb|AU236030.1|AU236030 AU236030 RAFL14 Arabidopsis thaliana... 36 8.6
gb|AV518995.1|AV518995 AV518995 Arabidopsis thaliana aboveg... 36 8.6
gb|AV533676.1|AV533676 AV533676 Arabidopsis thaliana flower... 36 8.6
gb|AV537710.1|AV537710 AV537710 Arabidopsis thaliana roots ... 36 8.6
gb|AV558784.1|AV558784 AV558784 Arabidopsis thaliana green ... 36 8.6
gb|AV559027.1|AV559027 AV559027 Arabidopsis thaliana green ... 36 8.6
gb|AV566712.1|AV566712 AV566712 Arabidopsis thaliana green ... 36 8.6
gb|BP565602.1|BP565602 BP565602 RAFL14 Arabidopsis thaliana... 36 8.6
gb|BP570037.1|BP570037 BP570037 RAFL14 Arabidopsis thaliana... 36 8.6
gb|BP576521.1|BP576521 BP576521 RAFL14 Arabidopsis thaliana... 36 8.6
gb|BP579105.1|BP579105 BP579105 RAFL14 Arabidopsis thaliana... 36 8.6
gb|BP580031.1|BP580031 BP580031 RAFL14 Arabidopsis thaliana... 36 8.6
gb|BP584613.1|BP584613 BP584613 RAFL14 Arabidopsis thaliana... 36 8.6
gb|BP588502.1|BP588502 BP588502 RAFL15 Arabidopsis thaliana... 36 8.6
gb|BP600765.1|BP600765 BP600765 RAFL16 Arabidopsis thaliana... 36 8.6
gb|BP605939.1|BP605939 BP605939 RAFL16 Arabidopsis thaliana... 36 8.6
gb|BP608103.1|BP608103 BP608103 RAFL16 Arabidopsis thaliana... 36 8.6
gb|BP616356.1|BP616356 BP616356 RAFL16 Arabidopsis thaliana... 36 8.6
gb|BP629139.1|BP629139 BP629139 RAFL17 Arabidopsis thaliana... 36 8.6
gb|BP631398.1|BP631398 BP631398 RAFL17 Arabidopsis thaliana... 36 8.6
gb|BP633184.1|BP633184 BP633184 RAFL17 Arabidopsis thaliana... 36 8.6
gb|BP635201.1|BP635201 BP635201 RAFL17 Arabidopsis thaliana... 36 8.6
gb|BP639642.1|BP639642 BP639642 RAFL19 Arabidopsis thaliana... 36 8.6
gb|BP644604.1|BP644604 BP644604 RAFL19 Arabidopsis thaliana... 36 8.6
gb|BP652651.1|BP652651 BP652651 RAFL19 Arabidopsis thaliana... 36 8.6
gb|BP658306.1|BP658306 BP658306 RAFL19 Arabidopsis thaliana... 36 8.6
gb|CB254932.1|CB254932 55-E018438-019-009-M14-T7R MPIZ-ADIS... 36 8.6
gb|CB255380.1|CB255380 43-E012995-019-004-F12-SP6r MPIZ-ADI... 36 8.6
gb|CB255383.1|CB255383 43-E013000-019-004-F12-T7R MPIZ-ADIS... 36 8.6
gb|BP814621.1|BP814621 BP814621 RAFL19 Arabidopsis thaliana... 36 8.6
gb|BP837355.1|BP837355 BP837355 RAFL19 Arabidopsis thaliana... 36 8.6
gb|BP851057.1|BP851057 BP851057 RAFL21 Arabidopsis thaliana... 36 8.6
gb|BP866049.1|BP866049 BP866049 RAFL21 Arabidopsis thaliana... 36 8.6
gb|DN604771.1|DN604771 AC17 Arabidopsis CaMs library Arabid... 36 8.6
gb|AY062607.1| Arabidopsis thaliana Unknown protein mRNA, c... 36 8.6
gb|AY063799.1| Arabidopsis thaliana unknown protein (At2g11... 36 8.6
gb|AY117199.1| Arabidopsis thaliana unknown protein (At2g11... 36 8.6
emb|AX510477.1| Sequence 5172 from Patent WO0216655 36 8.6
gb|BT003114.1| Arabidopsis thaliana At3g10190 mRNA, complet... 36 8.6
gb|AY087895.1| Arabidopsis thaliana clone 39407 mRNA, compl... 36 8.6
emb|BX294962.1| Arabidopsis thaliana transposon insertion S... 36 8.6
emb|BX294969.1| Arabidopsis thaliana transposon insertion S... 36 8.6
gb|AC006434.5|AC006434 Genomic sequence for Arabidopsis tha... 36 8.6
gb|AC002304.3|AC002304 Genomic sequence for Arabidopsis tha... 36 8.6
gb|AC009400.4|ATAC009400 Arabidopsis thaliana chromosome II... 36 8.6
gb|AC007045.5| Arabidopsis thaliana chromosome 2 clone F23M... 36 8.6
emb|BX842542.1|CNS0ADUY Arabidopsis thaliana Full-length cD... 36 8.6
emb|BX832872.1|CNS0A0BR Arabidopsis thaliana Full-length cD... 36 8.6
emb|BX832247.1|CNS0A167 Arabidopsis thaliana Full-length cD... 36 8.6
emb|BX830173.1|CNS0A18C Arabidopsis thaliana Full-length cD... 36 8.6
emb|BX826080.1|CNS0A53L Arabidopsis thaliana Full-length cD... 36 8.6
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 36 8.6
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 36 8.6
gb|AC006259.1| Arabidopsis thaliana BAC F21J6 from chromoso... 36 8.6
ref|NM_126868.2| Arabidopsis thaliana unknown protein AT2G1... 36 8.6
ref|NM_179619.1| Arabidopsis thaliana unknown protein AT2G1... 36 8.6
ref|NM_111854.3| Arabidopsis thaliana calcium ion binding A... 36 8.6
ref|NM_147914.3| Arabidopsis thaliana unknown protein AT5G2... 36 8.6
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 36 8.6
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 36 8.6
>gb|CL493138.1|CL493138 SAIL_574_G06.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_574_G06.v1, DNA sequence
Length = 1136
Score = 42.1 bits (21), Expect = 0.14
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 456 gcggcgcgcgtggccggccggccgg 480
|||||||||| ||||||||||||||
Sbjct: 930 gcggcgcgcggggccggccggccgg 906
>emb|CR770399.1| Arabidopsis thaliana T-DNA flanking sequence GK-480F06-019791,
genomic survey sequence
Length = 417
Score = 40.1 bits (20), Expect = 0.55
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 189 atagcaaggaaacaaacaaccaag 212
|||||| |||||||||||||||||
Sbjct: 151 atagcacggaaacaaacaaccaag 174
>emb|CR770400.1| Arabidopsis thaliana T-DNA flanking sequence GK-480F06-019800,
genomic survey sequence
Length = 533
Score = 40.1 bits (20), Expect = 0.55
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 189 atagcaaggaaacaaacaaccaag 212
|||||| |||||||||||||||||
Sbjct: 206 atagcacggaaacaaacaaccaag 229
>gb|CW798245.1|CW798245 WiscDsLox397E05 Arabidopsis thaliana T-DNA insertion flanking
sequences Arabidopsis thaliana genomic, DNA sequence
Length = 1209
Score = 40.1 bits (20), Expect = 0.55
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 189 atagcaaggaaacaaacaaccaag 212
|||||| |||||||||||||||||
Sbjct: 555 atagcacggaaacaaacaaccaag 578
>gb|AC084820.13| Arabidopsis thaliana chromosome 1 clone T2P3, *** SEQUENCING IN
PROGRESS ***, 33 unordered pieces
Length = 135457
Score = 40.1 bits (20), Expect = 0.55
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 189 atagcaaggaaacaaacaaccaag 212
|||||| |||||||||||||||||
Sbjct: 68196 atagcacggaaacaaacaaccaag 68173
Score = 40.1 bits (20), Expect = 0.55
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 189 atagcaaggaaacaaacaaccaag 212
|||||| |||||||||||||||||
Sbjct: 6678 atagcacggaaacaaacaaccaag 6655
>dbj|AB013396.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MTI20
Length = 79676
Score = 40.1 bits (20), Expect = 0.55
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 205 caaccaagagtggaagagag 224
||||||||||||||||||||
Sbjct: 65180 caaccaagagtggaagagag 65161
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 40.1 bits (20), Expect = 0.55
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 205 caaccaagagtggaagagag 224
||||||||||||||||||||
Sbjct: 20896602 caaccaagagtggaagagag 20896583
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 219 agagagagagaaaccgta 236
||||||||||||||||||
Sbjct: 8245160 agagagagagaaaccgta 8245143
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 40.1 bits (20), Expect = 0.55
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 205 caaccaagagtggaagagag 224
||||||||||||||||||||
Sbjct: 23485643 caaccaagagtggaagagag 23485624
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 219 agagagagagaaaccgta 236
||||||||||||||||||
Sbjct: 8754790 agagagagagaaaccgta 8754773
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 40.1 bits (20), Expect = 0.55
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 189 atagcaaggaaacaaacaaccaag 212
|||||| |||||||||||||||||
Sbjct: 17167946 atagcacggaaacaaacaaccaag 17167969
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 202 aaacaaccaagagtggaa 219
||||||||||||||||||
Sbjct: 28447404 aaacaaccaagagtggaa 28447387
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 196 ggaaacaaacaaccaaga 213
||||||||||||||||||
Sbjct: 20882096 ggaaacaaacaaccaaga 20882079
>gb|CL512253.1|CL512253 SAIL_857_F09.v2 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_857_F09.v2, DNA sequence
Length = 948
Score = 38.2 bits (19), Expect = 2.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 656 ccgccacggcggcgcgcgc 674
|||||||||||||||||||
Sbjct: 885 ccgccacggcggcgcgcgc 903
>gb|CL514333.1|CL514333 SAIL_888_C06.v2 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_888_C06.v2, DNA sequence
Length = 1868
Score = 38.2 bits (19), Expect = 2.2
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 211 agagtggaagagagagaga 229
|||||||||||||||||||
Sbjct: 1177 agagtggaagagagagaga 1195
>gb|B61147.1|B61147 T20O2TR TAMU Arabidopsis thaliana genomic clone T20O2, DNA sequence
Length = 523
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 280 ataatgccctaccaatta 297
||||||||||||||||||
Sbjct: 180 ataatgccctaccaatta 163
>emb|AL093356.1|CNS00WB2 Arabidopsis thaliana genome survey sequence SP6 end of BAC T11G2 of
TAMU library from strain Columbia of Arabidopsis
thaliana, genomic survey sequence
Length = 720
Score = 36.2 bits (18), Expect = 8.6
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 210 aagagtggaagagagagagaaa 231
|||||||||||||| |||||||
Sbjct: 701 aagagtggaagagaaagagaaa 680
>gb|CL462311.1|CL462311 SAIL_1162_B08.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_1162_B08.v1, DNA sequence
Length = 868
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 155 aaacaaatggaaaaggag 172
||||||||||||||||||
Sbjct: 558 aaacaaatggaaaaggag 575
>gb|CL477635.1|CL477635 SAIL_278_A01.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_278_A01.v1, DNA sequence
Length = 948
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 460 cgcgcgtggccggccggc 477
||||||||||||||||||
Sbjct: 765 cgcgcgtggccggccggc 782
>gb|Z37477.1|Z37477 ATTS3896 Strasbourg-A Arabidopsis thaliana cDNA clone FAFM05 3',
mRNA sequence
Length = 300
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 219 agagagagagaaaccgta 236
||||||||||||||||||
Sbjct: 125 agagagagagaaaccgta 108
>gb|AA394619.1|AA394619 26402 Lambda-PRL2 Arabidopsis thaliana cDNA clone 151M19XP 3', mRNA
sequence
Length = 467
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 219 agagagagagaaaccgta 236
||||||||||||||||||
Sbjct: 313 agagagagagaaaccgta 330
>gb|T45887.1|T45887 9150 Lambda-PRL2 Arabidopsis thaliana cDNA clone 133H7T7, mRNA
sequence
Length = 398
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 706 ctcgttgatctcctcctc 723
||||||||||||||||||
Sbjct: 179 ctcgttgatctcctcctc 196
>gb|AV795995.1|AV795995 AV795995 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-06-B19 3',
mRNA sequence
Length = 427
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 219 agagagagagaaaccgta 236
||||||||||||||||||
Sbjct: 188 agagagagagaaaccgta 171
>gb|AV797857.1|AV797857 AV797857 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-14-B06 3',
mRNA sequence
Length = 401
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 219 agagagagagaaaccgta 236
||||||||||||||||||
Sbjct: 188 agagagagagaaaccgta 171
>gb|AV804048.1|AV804048 AV804048 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-37-L20 3',
mRNA sequence
Length = 402
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 219 agagagagagaaaccgta 236
||||||||||||||||||
Sbjct: 142 agagagagagaaaccgta 125
>gb|AV806004.1|AV806004 AV806004 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-45-A13 3',
mRNA sequence
Length = 406
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 219 agagagagagaaaccgta 236
||||||||||||||||||
Sbjct: 140 agagagagagaaaccgta 123
>gb|AV816250.1|AV816250 AV816250 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-89-O21 3',
mRNA sequence
Length = 400
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 219 agagagagagaaaccgta 236
||||||||||||||||||
Sbjct: 175 agagagagagaaaccgta 158
>gb|AU236030.1|AU236030 AU236030 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-60-D20 5',
mRNA sequence
Length = 586
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 708 cgttgatctcctcctccg 725
||||||||||||||||||
Sbjct: 339 cgttgatctcctcctccg 322
>gb|AV518995.1|AV518995 AV518995 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APD45d12F 3', mRNA
sequence
Length = 610
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 219 agagagagagaaaccgta 236
||||||||||||||||||
Sbjct: 145 agagagagagaaaccgta 128
>gb|AV533676.1|AV533676 AV533676 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB066b01F 3', mRNA sequence
Length = 438
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 219 agagagagagaaaccgta 236
||||||||||||||||||
Sbjct: 142 agagagagagaaaccgta 125
>gb|AV537710.1|AV537710 AV537710 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ101g06F 3', mRNA sequence
Length = 423
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 219 agagagagagaaaccgta 236
||||||||||||||||||
Sbjct: 128 agagagagagaaaccgta 111
>gb|AV558784.1|AV558784 AV558784 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ105h03F 3', mRNA sequence
Length = 582
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 219 agagagagagaaaccgta 236
||||||||||||||||||
Sbjct: 142 agagagagagaaaccgta 125
>gb|AV559027.1|AV559027 AV559027 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ109h07F 3', mRNA sequence
Length = 604
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 219 agagagagagaaaccgta 236
||||||||||||||||||
Sbjct: 175 agagagagagaaaccgta 158
>gb|AV566712.1|AV566712 AV566712 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ248h10F 3', mRNA sequence
Length = 223
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 219 agagagagagaaaccgta 236
||||||||||||||||||
Sbjct: 144 agagagagagaaaccgta 127
>gb|BP565602.1|BP565602 BP565602 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-50-I23 3',
mRNA sequence
Length = 443
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 219 agagagagagaaaccgta 236
||||||||||||||||||
Sbjct: 142 agagagagagaaaccgta 125
>gb|BP570037.1|BP570037 BP570037 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-71-D04 3',
mRNA sequence
Length = 459
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 219 agagagagagaaaccgta 236
||||||||||||||||||
Sbjct: 142 agagagagagaaaccgta 125
>gb|BP576521.1|BP576521 BP576521 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-92-G02 3',
mRNA sequence
Length = 433
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 219 agagagagagaaaccgta 236
||||||||||||||||||
Sbjct: 142 agagagagagaaaccgta 125
>gb|BP579105.1|BP579105 BP579105 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-21-A22 3',
mRNA sequence
Length = 448
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 219 agagagagagaaaccgta 236
||||||||||||||||||
Sbjct: 142 agagagagagaaaccgta 125
>gb|BP580031.1|BP580031 BP580031 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-25-E13 3',
mRNA sequence
Length = 460
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 219 agagagagagaaaccgta 236
||||||||||||||||||
Sbjct: 142 agagagagagaaaccgta 125
>gb|BP584613.1|BP584613 BP584613 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-47-C08 3',
mRNA sequence
Length = 429
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 219 agagagagagaaaccgta 236
||||||||||||||||||
Sbjct: 142 agagagagagaaaccgta 125
>gb|BP588502.1|BP588502 BP588502 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-46-H21 3',
mRNA sequence
Length = 401
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 219 agagagagagaaaccgta 236
||||||||||||||||||
Sbjct: 172 agagagagagaaaccgta 155
>gb|BP600765.1|BP600765 BP600765 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-47-H05 3',
mRNA sequence
Length = 409
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 219 agagagagagaaaccgta 236
||||||||||||||||||
Sbjct: 175 agagagagagaaaccgta 158
>gb|BP605939.1|BP605939 BP605939 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-68-P19 3',
mRNA sequence
Length = 412
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 219 agagagagagaaaccgta 236
||||||||||||||||||
Sbjct: 155 agagagagagaaaccgta 138
>gb|BP608103.1|BP608103 BP608103 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-77-G07 3',
mRNA sequence
Length = 427
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 219 agagagagagaaaccgta 236
||||||||||||||||||
Sbjct: 175 agagagagagaaaccgta 158
>gb|BP616356.1|BP616356 BP616356 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-19-L06 3',
mRNA sequence
Length = 440
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 219 agagagagagaaaccgta 236
||||||||||||||||||
Sbjct: 175 agagagagagaaaccgta 158
>gb|BP629139.1|BP629139 BP629139 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-15-C18 3',
mRNA sequence
Length = 360
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 219 agagagagagaaaccgta 236
||||||||||||||||||
Sbjct: 143 agagagagagaaaccgta 126
>gb|BP631398.1|BP631398 BP631398 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-23-G09 3',
mRNA sequence
Length = 368
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 219 agagagagagaaaccgta 236
||||||||||||||||||
Sbjct: 175 agagagagagaaaccgta 158
>gb|BP633184.1|BP633184 BP633184 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-29-O04 3',
mRNA sequence
Length = 406
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 219 agagagagagaaaccgta 236
||||||||||||||||||
Sbjct: 142 agagagagagaaaccgta 125
>gb|BP635201.1|BP635201 BP635201 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-37-G10 3',
mRNA sequence
Length = 431
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 219 agagagagagaaaccgta 236
||||||||||||||||||
Sbjct: 175 agagagagagaaaccgta 158
>gb|BP639642.1|BP639642 BP639642 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-48-J20 3',
mRNA sequence
Length = 379
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 219 agagagagagaaaccgta 236
||||||||||||||||||
Sbjct: 144 agagagagagaaaccgta 127
>gb|BP644604.1|BP644604 BP644604 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-66-A21 3',
mRNA sequence
Length = 429
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 219 agagagagagaaaccgta 236
||||||||||||||||||
Sbjct: 142 agagagagagaaaccgta 125
>gb|BP652651.1|BP652651 BP652651 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-93-N15 3',
mRNA sequence
Length = 391
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 219 agagagagagaaaccgta 236
||||||||||||||||||
Sbjct: 188 agagagagagaaaccgta 171
>gb|BP658306.1|BP658306 BP658306 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-34-O06 3',
mRNA sequence
Length = 403
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 219 agagagagagaaaccgta 236
||||||||||||||||||
Sbjct: 154 agagagagagaaaccgta 137
>gb|CB254932.1|CB254932 55-E018438-019-009-M14-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768M149Q 5-PRIME, mRNA sequence
Length = 400
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 219 agagagagagaaaccgta 236
||||||||||||||||||
Sbjct: 235 agagagagagaaaccgta 252
>gb|CB255380.1|CB255380 43-E012995-019-004-F12-SP6r MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768F124Q 3-PRIME, mRNA sequence
Length = 605
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 708 cgttgatctcctcctccg 725
||||||||||||||||||
Sbjct: 427 cgttgatctcctcctccg 444
>gb|CB255383.1|CB255383 43-E013000-019-004-F12-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768F124Q 5-PRIME, mRNA sequence
Length = 615
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 708 cgttgatctcctcctccg 725
||||||||||||||||||
Sbjct: 319 cgttgatctcctcctccg 302
>gb|BP814621.1|BP814621 BP814621 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-36-F04 5',
mRNA sequence
Length = 383
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 708 cgttgatctcctcctccg 725
||||||||||||||||||
Sbjct: 342 cgttgatctcctcctccg 325
>gb|BP837355.1|BP837355 BP837355 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-20-F09 5',
mRNA sequence
Length = 389
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 52 ggttgtctgtcaaggagg 69
||||||||||||||||||
Sbjct: 232 ggttgtctgtcaaggagg 249
>gb|BP851057.1|BP851057 BP851057 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-15-C08 5',
mRNA sequence
Length = 416
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 521 tcggcgccggggctgttg 538
||||||||||||||||||
Sbjct: 245 tcggcgccggggctgttg 262
>gb|BP866049.1|BP866049 BP866049 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-76-F22 5',
mRNA sequence
Length = 392
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 52 ggttgtctgtcaaggagg 69
||||||||||||||||||
Sbjct: 202 ggttgtctgtcaaggagg 219
>gb|DN604771.1|DN604771 AC17 Arabidopsis CaMs library Arabidopsis thaliana cDNA, mRNA
sequence
Length = 627
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 708 cgttgatctcctcctccg 725
||||||||||||||||||
Sbjct: 328 cgttgatctcctcctccg 311
>gb|AY062607.1| Arabidopsis thaliana Unknown protein mRNA, complete cds
Length = 1387
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 219 agagagagagaaaccgta 236
||||||||||||||||||
Sbjct: 1201 agagagagagaaaccgta 1218
>gb|AY063799.1| Arabidopsis thaliana unknown protein (At2g11910) mRNA, complete cds
Length = 743
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 52 ggttgtctgtcaaggagg 69
||||||||||||||||||
Sbjct: 201 ggttgtctgtcaaggagg 218
>gb|AY117199.1| Arabidopsis thaliana unknown protein (At2g11910) mRNA, complete cds
Length = 538
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 52 ggttgtctgtcaaggagg 69
||||||||||||||||||
Sbjct: 158 ggttgtctgtcaaggagg 175
>emb|AX510477.1| Sequence 5172 from Patent WO0216655
Length = 2000
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 202 aaacaaccaagagtggaa 219
||||||||||||||||||
Sbjct: 542 aaacaaccaagagtggaa 559
>gb|BT003114.1| Arabidopsis thaliana At3g10190 mRNA, complete cds
Length = 630
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 708 cgttgatctcctcctccg 725
||||||||||||||||||
Sbjct: 328 cgttgatctcctcctccg 311
>gb|AY087895.1| Arabidopsis thaliana clone 39407 mRNA, complete sequence
Length = 830
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 52 ggttgtctgtcaaggagg 69
||||||||||||||||||
Sbjct: 304 ggttgtctgtcaaggagg 321
>emb|BX294962.1| Arabidopsis thaliana transposon insertion STS SM_3.32945, sequence
tagged site
Length = 316
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 708 cgttgatctcctcctccg 725
||||||||||||||||||
Sbjct: 143 cgttgatctcctcctccg 126
>emb|BX294969.1| Arabidopsis thaliana transposon insertion STS SM_3.32962, sequence
tagged site
Length = 330
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 708 cgttgatctcctcctccg 725
||||||||||||||||||
Sbjct: 143 cgttgatctcctcctccg 126
>gb|AC006434.5|AC006434 Genomic sequence for Arabidopsis thaliana BAC F10A5, complete sequence
Length = 129547
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 202 aaacaaccaagagtggaa 219
||||||||||||||||||
Sbjct: 15572 aaacaaccaagagtggaa 15589
>gb|AC002304.3|AC002304 Genomic sequence for Arabidopsis thaliana BAC F14J16 from chromosome I,
complete sequence
Length = 106320
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 196 ggaaacaaacaaccaaga 213
||||||||||||||||||
Sbjct: 27023 ggaaacaaacaaccaaga 27006
>gb|AC009400.4|ATAC009400 Arabidopsis thaliana chromosome III BAC F14P13 genomic sequence,
complete sequence
Length = 87937
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 708 cgttgatctcctcctccg 725
||||||||||||||||||
Sbjct: 75130 cgttgatctcctcctccg 75147
>gb|AC007045.5| Arabidopsis thaliana chromosome 2 clone F23M2 map mi421, complete
sequence
Length = 117945
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 52 ggttgtctgtcaaggagg 69
||||||||||||||||||
Sbjct: 26057 ggttgtctgtcaaggagg 26040
>emb|BX842542.1|CNS0ADUY Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB42ZB02 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1286
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 58 ctgtcaaggaggaaacaa 75
||||||||||||||||||
Sbjct: 781 ctgtcaaggaggaaacaa 798
>emb|BX832872.1|CNS0A0BR Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL18ZG11 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 404
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 219 agagagagagaaaccgta 236
||||||||||||||||||
Sbjct: 262 agagagagagaaaccgta 279
>emb|BX832247.1|CNS0A167 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH60ZH06 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1276
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 219 agagagagagaaaccgta 236
||||||||||||||||||
Sbjct: 1175 agagagagagaaaccgta 1192
>emb|BX830173.1|CNS0A18C Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB64ZC10 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1298
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 219 agagagagagaaaccgta 236
||||||||||||||||||
Sbjct: 1193 agagagagagaaaccgta 1210
>emb|BX826080.1|CNS0A53L Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL83ZE07 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 824
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 708 cgttgatctcctcctccg 725
||||||||||||||||||
Sbjct: 320 cgttgatctcctcctccg 303
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 708 cgttgatctcctcctccg 725
||||||||||||||||||
Sbjct: 3213937 cgttgatctcctcctccg 3213954
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 202 aaacaaccaagagtggaa 219
||||||||||||||||||
Sbjct: 12685062 aaacaaccaagagtggaa 12685045
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 196 ggaaacaaacaaccaaga 213
||||||||||||||||||
Sbjct: 5237873 ggaaacaaacaaccaaga 5237856
>gb|AC006259.1| Arabidopsis thaliana BAC F21J6 from chromosome V, containing KNAT3 and
mapping near 60.5 cM, complete sequence
Length = 110680
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 219 agagagagagaaaccgta 236
||||||||||||||||||
Sbjct: 91074 agagagagagaaaccgta 91057
>ref|NM_126868.2| Arabidopsis thaliana unknown protein AT2G11910 transcript variant
AT2G11910.1 mRNA, complete cds
Length = 830
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 52 ggttgtctgtcaaggagg 69
||||||||||||||||||
Sbjct: 304 ggttgtctgtcaaggagg 321
>ref|NM_179619.1| Arabidopsis thaliana unknown protein AT2G11910 transcript variant
AT2G11910.2 mRNA, complete cds
Length = 727
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 52 ggttgtctgtcaaggagg 69
||||||||||||||||||
Sbjct: 201 ggttgtctgtcaaggagg 218
>ref|NM_111854.3| Arabidopsis thaliana calcium ion binding AT3G10190 mRNA, complete
cds
Length = 843
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 708 cgttgatctcctcctccg 725
||||||||||||||||||
Sbjct: 339 cgttgatctcctcctccg 322
>ref|NM_147914.3| Arabidopsis thaliana unknown protein AT5G25265 mRNA, complete cds
Length = 1435
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 219 agagagagagaaaccgta 236
||||||||||||||||||
Sbjct: 1201 agagagagagaaaccgta 1218
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 52 ggttgtctgtcaaggagg 69
||||||||||||||||||
Sbjct: 4813293 ggttgtctgtcaaggagg 4813276
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 36.2 bits (18), Expect = 8.6
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 708 cgttgatctcctcctccg 725
||||||||||||||||||
Sbjct: 3155641 cgttgatctcctcctccg 3155624
Database: At_nucl_with_EST.fasta
Posted date: May 2, 2006 2:53 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 402,928
Number of Sequences: 1013581
Number of extensions: 402928
Number of successful extensions: 32315
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30297
Number of HSP's gapped (non-prelim): 2018
length of query: 771
length of database: 908,940,872
effective HSP length: 20
effective length of query: 751
effective length of database: 888,669,252
effective search space: 667390608252
effective search space used: 667390608252
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)