BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 8612115.2.1
         (1078 letters)

Database: At_nucl_with_EST.fasta 
           1,013,581 sequences; 908,940,872 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|AB006067.1|  Arabidopsis thaliana gene for acidic endoch...    44   0.046

>dbj|AB006067.1| Arabidopsis thaliana gene for acidic endochitinase, complete cds,
           isolate:Ci-0
          Length = 1790

 Score = 44.2 bits (22), Expect = 0.046
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 37  gcatcgccatctactggggccagaacggcaacga 70
           |||| |||||||| |||||||| |||||||||||
Sbjct: 384 gcatagccatctattggggccaaaacggcaacga 417



  Database: At_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:09 PM
  Number of letters in database: 908,940,872
  Number of sequences in database:  1,013,581
  
Lambda     K      H
    1.38    0.711     1.31 

Gapped
Lambda     K      H
    1.38    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 198,112
Number of Sequences: 1013581
Number of extensions: 198112
Number of successful extensions: 13745
Number of sequences better than  0.5: 1
Number of HSP's better than  0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13744
Number of HSP's gapped (non-prelim): 1
length of query: 1078
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1058
effective length of database: 888,669,252
effective search space: 940212068616
effective search space used: 940212068616
T: 0
A: 0
X1: 11 (21.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 21 (42.2 bits)