BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8010573.2.1
(1223 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|B23441.1|B23441 F17N9TFB IGF Arabidopsis thaliana genomi... 54 6e-005
gb|BE520406.1|BE520406 M12C4STM Arabidopsis developing seed... 54 6e-005
gb|BE526501.1|BE526501 M65B18STM Arabidopsis developing see... 54 6e-005
gb|BE530096.1|BE530096 M76B12STM Arabidopsis developing see... 54 6e-005
gb|AV827119.1|AV827119 AV827119 RAFL9 Arabidopsis thaliana ... 54 6e-005
gb|BP813272.1|BP813272 BP813272 RAFL19 Arabidopsis thaliana... 54 6e-005
gb|BP813809.1|BP813809 BP813809 RAFL19 Arabidopsis thaliana... 54 6e-005
gb|BP817545.1|BP817545 BP817545 RAFL19 Arabidopsis thaliana... 54 6e-005
gb|BP820758.1|BP820758 BP820758 RAFL19 Arabidopsis thaliana... 54 6e-005
gb|BP841854.1|BP841854 BP841854 RAFL21 Arabidopsis thaliana... 54 6e-005
gb|BP853445.1|BP853445 BP853445 RAFL21 Arabidopsis thaliana... 54 6e-005
gb|BP862064.1|BP862064 BP862064 RAFL21 Arabidopsis thaliana... 54 6e-005
gb|BP866683.1|BP866683 BP866683 RAFL21 Arabidopsis thaliana... 54 6e-005
gb|U43485.1|ATU43485 Arabidopsis thaliana xyloglucan endotr... 54 6e-005
gb|AF163823.1|AF163823 Arabidopsis thaliana endoxyloglucan ... 54 6e-005
emb|AX412411.1| Sequence 175 from Patent WO0222675 54 6e-005
emb|AX412412.1| Sequence 176 from Patent WO0222675 54 6e-005
gb|AY125495.1| Arabidopsis thaliana AT5g57550/MUA2_12 mRNA,... 54 6e-005
gb|AY143939.1| Arabidopsis thaliana At5g57550/MUA2_12 mRNA,... 54 6e-005
emb|BX833748.1|CNS0A0FK Arabidopsis thaliana Full-length cD... 54 6e-005
dbj|AB011482.1| Arabidopsis thaliana genomic DNA, chromosom... 54 6e-005
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 54 6e-005
ref|NM_125136.3| Arabidopsis thaliana XTR3 (XYLOGLUCAN ENDO... 54 6e-005
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 54 6e-005
gb|CC798462.1|CC798462 SALK_146381.42.40.x Arabidopsis thal... 50 0.001
gb|N37583.1|N37583 18810 Lambda-PRL2 Arabidopsis thaliana c... 50 0.001
gb|AF370621.1|AF370621 Arabidopsis thaliana xylglucan endo-... 50 0.001
emb|AX507453.1| Sequence 2148 from Patent WO0216655 50 0.001
gb|AC004512.2|T8F5 Arabidopsis thaliana chromosome 1 BAC T8... 50 0.001
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 50 0.001
ref|NM_105205.2| Arabidopsis thaliana ATXTH17; hydrolase, a... 50 0.001
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 50 0.001
gb|BP851595.1|BP851595 BP851595 RAFL21 Arabidopsis thaliana... 48 0.004
gb|BH211798.1|BH211798 SALK_006674 Arabidopsis thaliana TDN... 42 0.22
gb|BZ766866.1|BZ766866 SALK_137968.52.80.x Arabidopsis thal... 42 0.22
gb|CC798456.1|CC798456 SALK_146373.37.00.x Arabidopsis thal... 42 0.22
gb|CC798463.1|CC798463 SALK_146382.42.60.x Arabidopsis thal... 42 0.22
gb|CK121402.1|CK121402 203e12.p1 AtM1 Arabidopsis thaliana ... 42 0.22
gb|BP831201.1|BP831201 BP831201 RAFL19 Arabidopsis thaliana... 42 0.22
dbj|AP000412.1| Arabidopsis thaliana genomic DNA, chromosom... 42 0.22
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 42 0.22
ref|NM_113409.3| Arabidopsis thaliana XTH3 (XYLOGLUCAN ENDO... 42 0.22
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 42 0.22
>gb|B23441.1|B23441 F17N9TFB IGF Arabidopsis thaliana genomic clone F17N9, DNA sequence
Length = 652
Score = 54.0 bits (27), Expect = 6e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 326 tcgacatgcagctcaagctcgtcccgggggactccgccggcaccgtc 372
|||||||||||||||| |||||||| || |||||||||| ||||||
Sbjct: 99 tcgacatgcagctcaaactcgtccctggaaactccgccggaaccgtc 145
>gb|BE520406.1|BE520406 M12C4STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone M12C4 5', mRNA sequence
Length = 375
Score = 54.0 bits (27), Expect = 6e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 326 tcgacatgcagctcaagctcgtcccgggggactccgccggcaccgtc 372
|||||||||||||||| |||||||| || |||||||||| ||||||
Sbjct: 221 tcgacatgcagctcaaactcgtccctggaaactccgccggaaccgtc 267
>gb|BE526501.1|BE526501 M65B18STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone 600035165R1 5', mRNA sequence
Length = 258
Score = 54.0 bits (27), Expect = 6e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 326 tcgacatgcagctcaagctcgtcccgggggactccgccggcaccgtc 372
|||||||||||||||| |||||||| || |||||||||| ||||||
Sbjct: 142 tcgacatgcagctcaaactcgtccctggaaactccgccggaaccgtc 188
>gb|BE530096.1|BE530096 M76B12STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone 600039541R1 5', mRNA sequence
Length = 258
Score = 54.0 bits (27), Expect = 6e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 326 tcgacatgcagctcaagctcgtcccgggggactccgccggcaccgtc 372
|||||||||||||||| |||||||| || |||||||||| ||||||
Sbjct: 204 tcgacatgcagctcaaactcgtccctggaaactccgccggaaccgtc 250
>gb|AV827119.1|AV827119 AV827119 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-11-I12 5',
mRNA sequence
Length = 617
Score = 54.0 bits (27), Expect = 6e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 326 tcgacatgcagctcaagctcgtcccgggggactccgccggcaccgtc 372
|||||||||||||||| |||||||| || |||||||||| ||||||
Sbjct: 262 tcgacatgcagctcaaactcgtccctggaaactccgccggaaccgtc 308
>gb|BP813272.1|BP813272 BP813272 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-05-O14 5',
mRNA sequence
Length = 405
Score = 54.0 bits (27), Expect = 6e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 326 tcgacatgcagctcaagctcgtcccgggggactccgccggcaccgtc 372
|||||||||||||||| |||||||| || |||||||||| ||||||
Sbjct: 260 tcgacatgcagctcaaactcgtccctggaaactccgccggaaccgtc 306
>gb|BP813809.1|BP813809 BP813809 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-33-L01 5',
mRNA sequence
Length = 377
Score = 54.0 bits (27), Expect = 6e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 326 tcgacatgcagctcaagctcgtcccgggggactccgccggcaccgtc 372
|||||||||||||||| |||||||| || |||||||||| ||||||
Sbjct: 256 tcgacatgcagctcaaactcgtccctggaaactccgccggaaccgtc 302
>gb|BP817545.1|BP817545 BP817545 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-45-E13 5',
mRNA sequence
Length = 384
Score = 54.0 bits (27), Expect = 6e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 326 tcgacatgcagctcaagctcgtcccgggggactccgccggcaccgtc 372
|||||||||||||||| |||||||| || |||||||||| ||||||
Sbjct: 260 tcgacatgcagctcaaactcgtccctggaaactccgccggaaccgtc 306
>gb|BP820758.1|BP820758 BP820758 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-55-J15 5',
mRNA sequence
Length = 391
Score = 54.0 bits (27), Expect = 6e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 326 tcgacatgcagctcaagctcgtcccgggggactccgccggcaccgtc 372
|||||||||||||||| |||||||| || |||||||||| ||||||
Sbjct: 261 tcgacatgcagctcaaactcgtccctggaaactccgccggaaccgtc 307
>gb|BP841854.1|BP841854 BP841854 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-52-G01 5',
mRNA sequence
Length = 383
Score = 54.0 bits (27), Expect = 6e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 326 tcgacatgcagctcaagctcgtcccgggggactccgccggcaccgtc 372
|||||||||||||||| |||||||| || |||||||||| ||||||
Sbjct: 263 tcgacatgcagctcaaactcgtccctggaaactccgccggaaccgtc 309
>gb|BP853445.1|BP853445 BP853445 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-23-F03 5',
mRNA sequence
Length = 363
Score = 54.0 bits (27), Expect = 6e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 326 tcgacatgcagctcaagctcgtcccgggggactccgccggcaccgtc 372
|||||||||||||||| |||||||| || |||||||||| ||||||
Sbjct: 260 tcgacatgcagctcaaactcgtccctggaaactccgccggaaccgtc 306
>gb|BP862064.1|BP862064 BP862064 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-49-M11 5',
mRNA sequence
Length = 396
Score = 54.0 bits (27), Expect = 6e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 326 tcgacatgcagctcaagctcgtcccgggggactccgccggcaccgtc 372
|||||||||||||||| |||||||| || |||||||||| ||||||
Sbjct: 260 tcgacatgcagctcaaactcgtccctggaaactccgccggaaccgtc 306
>gb|BP866683.1|BP866683 BP866683 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-78-I24 5',
mRNA sequence
Length = 385
Score = 54.0 bits (27), Expect = 6e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 326 tcgacatgcagctcaagctcgtcccgggggactccgccggcaccgtc 372
|||||||||||||||| |||||||| || |||||||||| ||||||
Sbjct: 260 tcgacatgcagctcaaactcgtccctggaaactccgccggaaccgtc 306
>gb|U43485.1|ATU43485 Arabidopsis thaliana xyloglucan endotransglycosylase-related
protein (XTR3) mRNA, 3' end, partial cds
Length = 1017
Score = 54.0 bits (27), Expect = 6e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 326 tcgacatgcagctcaagctcgtcccgggggactccgccggcaccgtc 372
|||||||||||||||| |||||||| || |||||||||| ||||||
Sbjct: 203 tcgacatgcagctcaaactcgtccctggaaactccgccggaaccgtc 249
>gb|AF163823.1|AF163823 Arabidopsis thaliana endoxyloglucan transferase (XTR3) gene, complete
cds
Length = 2703
Score = 54.0 bits (27), Expect = 6e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 326 tcgacatgcagctcaagctcgtcccgggggactccgccggcaccgtc 372
|||||||||||||||| |||||||| || |||||||||| ||||||
Sbjct: 1341 tcgacatgcagctcaaactcgtccctggaaactccgccggaaccgtc 1387
>emb|AX412411.1| Sequence 175 from Patent WO0222675
Length = 855
Score = 54.0 bits (27), Expect = 6e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 326 tcgacatgcagctcaagctcgtcccgggggactccgccggcaccgtc 372
|||||||||||||||| |||||||| || |||||||||| ||||||
Sbjct: 224 tcgacatgcagctcaaactcgtccctggaaactccgccggaaccgtc 270
>emb|AX412412.1| Sequence 176 from Patent WO0222675
Length = 855
Score = 54.0 bits (27), Expect = 6e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 326 tcgacatgcagctcaagctcgtcccgggggactccgccggcaccgtc 372
|||||||||||||||| |||||||| || |||||||||| ||||||
Sbjct: 224 tcgacatgcagctcaaactcgtccctggaaactccgccggaaccgtc 270
>gb|AY125495.1| Arabidopsis thaliana AT5g57550/MUA2_12 mRNA, complete cds
Length = 1060
Score = 54.0 bits (27), Expect = 6e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 326 tcgacatgcagctcaagctcgtcccgggggactccgccggcaccgtc 372
|||||||||||||||| |||||||| || |||||||||| ||||||
Sbjct: 261 tcgacatgcagctcaaactcgtccctggaaactccgccggaaccgtc 307
>gb|AY143939.1| Arabidopsis thaliana At5g57550/MUA2_12 mRNA, complete cds
Length = 855
Score = 54.0 bits (27), Expect = 6e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 326 tcgacatgcagctcaagctcgtcccgggggactccgccggcaccgtc 372
|||||||||||||||| |||||||| || |||||||||| ||||||
Sbjct: 224 tcgacatgcagctcaaactcgtccctggaaactccgccggaaccgtc 270
>emb|BX833748.1|CNS0A0FK Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL74ZH09 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 1025
Score = 54.0 bits (27), Expect = 6e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 326 tcgacatgcagctcaagctcgtcccgggggactccgccggcaccgtc 372
|||||||||||||||| |||||||| || |||||||||| ||||||
Sbjct: 238 tcgacatgcagctcaaactcgtccctggaaactccgccggaaccgtc 284
>dbj|AB011482.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUA2
Length = 83478
Score = 54.0 bits (27), Expect = 6e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 326 tcgacatgcagctcaagctcgtcccgggggactccgccggcaccgtc 372
|||||||||||||||| |||||||| || |||||||||| ||||||
Sbjct: 37102 tcgacatgcagctcaaactcgtccctggaaactccgccggaaccgtc 37056
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 54.0 bits (27), Expect = 6e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 326 tcgacatgcagctcaagctcgtcccgggggactccgccggcaccgtc 372
|||||||||||||||| |||||||| || |||||||||| ||||||
Sbjct: 20754346 tcgacatgcagctcaaactcgtccctggaaactccgccggaaccgtc 20754300
>ref|NM_125136.3| Arabidopsis thaliana XTR3 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 3);
hydrolase, acting on glycosyl bonds AT5G57550 (XTR3)
mRNA, complete cds
Length = 1059
Score = 54.0 bits (27), Expect = 6e-005
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 326 tcgacatgcagctcaagctcgtcccgggggactccgccggcaccgtc 372
|||||||||||||||| |||||||| || |||||||||| ||||||
Sbjct: 261 tcgacatgcagctcaaactcgtccctggaaactccgccggaaccgtc 307
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 54.0 bits (27), Expect = 6e-005
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 326 tcgacatgcagctcaagctcgtcccgggggactccgccggcaccgtc 372
|||||||||||||||| |||||||| || |||||||||| ||||||
Sbjct: 23323387 tcgacatgcagctcaaactcgtccctggaaactccgccggaaccgtc 23323341
>gb|CC798462.1|CC798462 SALK_146381.42.40.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_146381.42.40.x,
DNA sequence
Length = 200
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 883 tacatgatctacaactactgcaccgataa 911
||||||||||||||||| |||||||||||
Sbjct: 131 tacatgatctacaactattgcaccgataa 103
>gb|N37583.1|N37583 18810 Lambda-PRL2 Arabidopsis thaliana cDNA clone 206L9T7 3', mRNA
sequence
Length = 570
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 883 tacatgatctacaactactgcaccgataa 911
||||||||||||||||| |||||||||||
Sbjct: 248 tacatgatctacaactattgcaccgataa 276
>gb|AF370621.1|AF370621 Arabidopsis thaliana xylglucan endo-transglycolsylase-like protein
(T8F5.9) mRNA, complete cds
Length = 849
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 883 tacatgatctacaactactgcaccgataa 911
||||||||||||||||| |||||||||||
Sbjct: 781 tacatgatctacaactattgcaccgataa 809
>emb|AX507453.1| Sequence 2148 from Patent WO0216655
Length = 849
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 883 tacatgatctacaactactgcaccgataa 911
||||||||||||||||| |||||||||||
Sbjct: 781 tacatgatctacaactattgcaccgataa 809
>gb|AC004512.2|T8F5 Arabidopsis thaliana chromosome 1 BAC T8F5 sequence, complete sequence
Length = 88292
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 883 tacatgatctacaactactgcaccgataa 911
||||||||||||||||| |||||||||||
Sbjct: 24313 tacatgatctacaactattgcaccgataa 24341
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 883 tacatgatctacaactactgcaccgataa 911
||||||||||||||||| |||||||||||
Sbjct: 8499566 tacatgatctacaactattgcaccgataa 8499594
>ref|NM_105205.2| Arabidopsis thaliana ATXTH17; hydrolase, acting on glycosyl bonds /
hydrolase, hydrolyzing O-glycosyl compounds AT1G65310
(ATXTH17) mRNA, complete cds
Length = 1003
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 883 tacatgatctacaactactgcaccgataa 911
||||||||||||||||| |||||||||||
Sbjct: 781 tacatgatctacaactattgcaccgataa 809
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 883 tacatgatctacaactactgcaccgataa 911
||||||||||||||||| |||||||||||
Sbjct: 24261914 tacatgatctacaactattgcaccgataa 24261942
>gb|BP851595.1|BP851595 BP851595 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-16-P04 5',
mRNA sequence
Length = 389
Score = 48.1 bits (24), Expect = 0.004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 326 tcgacatgcagctcaagctcgtcccgggggactccgccgg 365
|||||||||||||||| |||||||| || ||||||||||
Sbjct: 262 tcgacatgcagctcaaactcgtccctggaaactccgccgg 301
>gb|BH211798.1|BH211798 SALK_006674 Arabidopsis thaliana TDNA insertion lines Arabidopsis
thaliana genomic clone SALK_006674, DNA sequence
Length = 468
Score = 42.1 bits (21), Expect = 0.22
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 883 tacatgatctacaactactgcaccgataa 911
||||||||||||| ||| |||||||||||
Sbjct: 365 tacatgatctacagctattgcaccgataa 337
>gb|BZ766866.1|BZ766866 SALK_137968.52.80.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_137968.52.80.x,
DNA sequence
Length = 426
Score = 42.1 bits (21), Expect = 0.22
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 406 cacgacgagatcgacttcgagttcctggggaac 438
||||||||||| ||||||||||| || ||||||
Sbjct: 243 cacgacgagattgacttcgagtttctagggaac 275
>gb|CC798456.1|CC798456 SALK_146373.37.00.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_146373.37.00.x,
DNA sequence
Length = 206
Score = 42.1 bits (21), Expect = 0.22
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 883 tacatgatctacaactactgcaccgataa 911
|||||||||| |||||| |||||||||||
Sbjct: 137 tacatgatcttcaactattgcaccgataa 109
>gb|CC798463.1|CC798463 SALK_146382.42.60.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_146382.42.60.x,
DNA sequence
Length = 173
Score = 42.1 bits (21), Expect = 0.22
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 883 tacatgatctacaactactgcaccgataa 911
||||||||||||| ||| |||||||||||
Sbjct: 104 tacatgatctacatctattgcaccgataa 76
>gb|CK121402.1|CK121402 203e12.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011E12203
5-PRIME, mRNA sequence
Length = 690
Score = 42.1 bits (21), Expect = 0.22
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 406 cacgacgagatcgacttcgagttcctggggaac 438
||||||||||| ||||||||||| || ||||||
Sbjct: 48 cacgacgagattgacttcgagtttctagggaac 80
>gb|BP831201.1|BP831201 BP831201 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-88-E09 5',
mRNA sequence
Length = 414
Score = 42.1 bits (21), Expect = 0.22
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 326 tcgacatgcagctcaagctcgtccc 350
|||||||||||||||| ||||||||
Sbjct: 258 tcgacatgcagctcaaactcgtccc 282
>dbj|AP000412.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone: K3G3
Length = 24057
Score = 42.1 bits (21), Expect = 0.22
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 406 cacgacgagatcgacttcgagttcctggggaac 438
||||||||||| ||||||||||| || ||||||
Sbjct: 20451 cacgacgagattgacttcgagtttctagggaac 20483
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 42.1 bits (21), Expect = 0.22
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 406 cacgacgagatcgacttcgagttcctggggaac 438
||||||||||| ||||||||||| || ||||||
Sbjct: 9068440 cacgacgagattgacttcgagtttctagggaac 9068472
>ref|NM_113409.3| Arabidopsis thaliana XTH3 (XYLOGLUCAN
ENDOTRANSGLUCOSYLASE/HYDROLASE 3); hydrolase, acting on
glycosyl bonds AT3G25050 (XTH3) mRNA, complete cds
Length = 1065
Score = 42.1 bits (21), Expect = 0.22
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 406 cacgacgagatcgacttcgagttcctggggaac 438
||||||||||| ||||||||||| || ||||||
Sbjct: 319 cacgacgagattgacttcgagtttctagggaac 351
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 42.1 bits (21), Expect = 0.22
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 406 cacgacgagatcgacttcgagttcctggggaac 438
||||||||||| ||||||||||| || ||||||
Sbjct: 9127371 cacgacgagattgacttcgagtttctagggaac 9127403
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 309,805
Number of Sequences: 1013581
Number of extensions: 309805
Number of successful extensions: 21528
Number of sequences better than 0.5: 43
Number of HSP's better than 0.5 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20893
Number of HSP's gapped (non-prelim): 635
length of query: 1223
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1203
effective length of database: 888,669,252
effective search space: 1069069110156
effective search space used: 1069069110156
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)