BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5705822.3.1
(888 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY039536.1| Arabidopsis thaliana AT3g26720/MLJ15_12 mRNA... 72 2e-010
gb|AY113006.1| Arabidopsis thaliana AT3g26720/MLJ15_12 mRNA... 72 2e-010
emb|AX506065.1| Sequence 760 from Patent WO0216655 72 2e-010
emb|Y11767.1|ATALPMAP A.thaliana mRNA for alpha-mannosidase... 72 2e-010
ref|NM_113583.2| Arabidopsis thaliana alpha-mannosidase AT3... 72 2e-010
gb|AV821365.1|AV821365 AV821365 RAFL4 Arabidopsis thaliana ... 66 1e-008
gb|AV529226.1|AV529226 AV529226 Arabidopsis thaliana aboveg... 66 1e-008
gb|AV529772.1|AV529772 AV529772 Arabidopsis thaliana aboveg... 66 1e-008
gb|AV831034.1|AV831034 AV831034 RAFL9 Arabidopsis thaliana ... 64 4e-008
gb|AV547373.1|AV547373 AV547373 Arabidopsis thaliana roots ... 64 4e-008
gb|BP815259.1|BP815259 BP815259 RAFL19 Arabidopsis thaliana... 64 4e-008
gb|AY099704.1| Arabidopsis thaliana alpha-mannosidase (At5g... 64 4e-008
gb|BT000301.1| Arabidopsis thaliana alpha-mannosidase (At5g... 64 4e-008
dbj|AB005230.2| Arabidopsis thaliana genomic DNA, chromosom... 64 4e-008
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 64 4e-008
ref|NM_121401.4| Arabidopsis thaliana alpha-mannosidase AT5... 64 4e-008
ref|NM_001036801.1| Arabidopsis thaliana alpha-mannosidase ... 64 4e-008
ref|NM_180706.2| Arabidopsis thaliana alpha-mannosidase AT5... 64 4e-008
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 64 4e-008
gb|CW795983.1|CW795983 WiscDsLox384B1 Arabidopsis thaliana ... 62 2e-007
dbj|AB026648.1| Arabidopsis thaliana genomic DNA, chromosom... 62 2e-007
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 62 2e-007
emb|X98130.1|AT81KBGEN Arabidopsis thaliana 81kb genomic se... 62 2e-007
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 62 2e-007
emb|AJ593532.1| Arabidopsis thaliana T-DNA flanking sequenc... 56 1e-005
gb|AV528984.1|AV528984 AV528984 Arabidopsis thaliana aboveg... 56 1e-005
gb|BP804444.1|BP804444 BP804444 RAFL16 Arabidopsis thaliana... 52 2e-004
gb|BP808017.1|BP808017 BP808017 RAFL16 Arabidopsis thaliana... 46 0.010
gb|BP808964.1|BP808964 BP808964 RAFL16 Arabidopsis thaliana... 46 0.010
gb|BP809064.1|BP809064 BP809064 RAFL16 Arabidopsis thaliana... 46 0.010
>gb|AY039536.1| Arabidopsis thaliana AT3g26720/MLJ15_12 mRNA, complete cds
Length = 3178
Score = 71.9 bits (36), Expect = 2e-010
Identities = 201/256 (78%)
Strand = Plus / Plus
Query: 613 tccaggatgatccccttcttttcgattataatgttgaagaacgagtaaatgattttgttg 672
||||||||||||| || ||||| || || |||||| ||||| |||| || || ||||| |
Sbjct: 805 tccaggatgatcctctcctttttgactacaatgttcaagaaagagtcaacgactttgtag 864
Query: 673 ctgcagctgtagcacaggcaaatatcacgaggacaaatcatatcatgtttacaatgggaa 732
| ||||| | ||||||| ||| | || |||||||||||||| |||| ||||||||
Sbjct: 865 cagcagccctcgcacaggttaatgtgaccaggacaaatcatataatgtggttaatgggaa 924
Query: 733 cagacttcaaataccaatacgcagagagttggttcggaaatatggacaaactaattcact 792
| |||||| ||||| || ||| | |||||| || | || ||||| | ||||| |
Sbjct: 925 ctgacttccgttaccagtatgcatattcgtggttcagacagatagacaagtttattcatt 984
Query: 793 atgtgaacaaggatggccgtatccatgctctttattccacaccttccatttataccgatg 852
|||| ||||||||||| ||| || ||| ||| ||||| ||||| || || || |||||||
Sbjct: 985 atgttaacaaggatgggcgtctcaatgttctgtattcgacaccatctatctacaccgatg 1044
Query: 853 caaaatatgctgcaaa 868
||||||||||||||||
Sbjct: 1045 caaaatatgctgcaaa 1060
Score = 65.9 bits (33), Expect = 1e-008
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 234 ataaatggtggcatgtgcatgcacgatgaggcggctgtacactatattgacatgatcgat 293
||||||||||| ||||| ||||| |||||||| || ||| |||||||||||||| |||
Sbjct: 429 ataaatggtggaatgtgtatgcatgatgaggcaactccacattatattgacatgattgat 488
Query: 294 cagactaca 302
|||||||||
Sbjct: 489 cagactaca 497
Score = 46.1 bits (23), Expect = 0.010
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 349 ttggctggcagattgatccgtttgggcactctgcggttcaggcttaccttcttgg 403
|||| |||||||||||||| ||||| || ||||| || || |||||||| |||||
Sbjct: 544 ttggttggcagattgatccctttggacattctgcagtacaagcttacctgcttgg 598
Score = 46.1 bits (23), Expect = 0.010
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 12 tggctcaagaccgtagaccagtactacgtcggatccaacaactccat 58
||||| |||||||| || ||||||||||| || ||||| ||||||||
Sbjct: 207 tggcttaagaccgttgatcagtactacgtaggctccaataactccat 253
>gb|AY113006.1| Arabidopsis thaliana AT3g26720/MLJ15_12 mRNA, complete cds
Length = 3060
Score = 71.9 bits (36), Expect = 2e-010
Identities = 201/256 (78%)
Strand = Plus / Plus
Query: 613 tccaggatgatccccttcttttcgattataatgttgaagaacgagtaaatgattttgttg 672
||||||||||||| || ||||| || || |||||| ||||| |||| || || ||||| |
Sbjct: 752 tccaggatgatcctctcctttttgactacaatgttcaagaaagagtcaacgactttgtag 811
Query: 673 ctgcagctgtagcacaggcaaatatcacgaggacaaatcatatcatgtttacaatgggaa 732
| ||||| | ||||||| ||| | || |||||||||||||| |||| ||||||||
Sbjct: 812 cagcagccctcgcacaggttaatgtgaccaggacaaatcatataatgtggttaatgggaa 871
Query: 733 cagacttcaaataccaatacgcagagagttggttcggaaatatggacaaactaattcact 792
| |||||| ||||| || ||| | |||||| || | || ||||| | ||||| |
Sbjct: 872 ctgacttccgttaccagtatgcatattcgtggttcagacagatagacaagtttattcatt 931
Query: 793 atgtgaacaaggatggccgtatccatgctctttattccacaccttccatttataccgatg 852
|||| ||||||||||| ||| || ||| ||| ||||| ||||| || || || |||||||
Sbjct: 932 atgttaacaaggatgggcgtctcaatgttctgtattcgacaccatctatctacaccgatg 991
Query: 853 caaaatatgctgcaaa 868
||||||||||||||||
Sbjct: 992 caaaatatgctgcaaa 1007
Score = 65.9 bits (33), Expect = 1e-008
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 234 ataaatggtggcatgtgcatgcacgatgaggcggctgtacactatattgacatgatcgat 293
||||||||||| ||||| ||||| |||||||| || ||| |||||||||||||| |||
Sbjct: 376 ataaatggtggaatgtgtatgcatgatgaggcaactccacattatattgacatgattgat 435
Query: 294 cagactaca 302
|||||||||
Sbjct: 436 cagactaca 444
Score = 46.1 bits (23), Expect = 0.010
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 349 ttggctggcagattgatccgtttgggcactctgcggttcaggcttaccttcttgg 403
|||| |||||||||||||| ||||| || ||||| || || |||||||| |||||
Sbjct: 491 ttggttggcagattgatccctttggacattctgcagtacaagcttacctgcttgg 545
Score = 46.1 bits (23), Expect = 0.010
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 12 tggctcaagaccgtagaccagtactacgtcggatccaacaactccat 58
||||| |||||||| || ||||||||||| || ||||| ||||||||
Sbjct: 154 tggcttaagaccgttgatcagtactacgtaggctccaataactccat 200
>emb|AX506065.1| Sequence 760 from Patent WO0216655
Length = 3060
Score = 71.9 bits (36), Expect = 2e-010
Identities = 201/256 (78%)
Strand = Plus / Plus
Query: 613 tccaggatgatccccttcttttcgattataatgttgaagaacgagtaaatgattttgttg 672
||||||||||||| || ||||| || || |||||| ||||| |||| || || ||||| |
Sbjct: 752 tccaggatgatcctctcctttttgactacaatgttcaagaaagagtcaacgactttgtag 811
Query: 673 ctgcagctgtagcacaggcaaatatcacgaggacaaatcatatcatgtttacaatgggaa 732
| ||||| | ||||||| ||| | || |||||||||||||| |||| ||||||||
Sbjct: 812 cagcagccctcgcacaggttaatgtgaccaggacaaatcatataatgtggttaatgggaa 871
Query: 733 cagacttcaaataccaatacgcagagagttggttcggaaatatggacaaactaattcact 792
| |||||| ||||| || ||| | |||||| || | || ||||| | ||||| |
Sbjct: 872 ctgacttccgttaccagtatgcatattcgtggttcagacagatagacaagtttattcatt 931
Query: 793 atgtgaacaaggatggccgtatccatgctctttattccacaccttccatttataccgatg 852
|||| ||||||||||| ||| || ||| ||| ||||| ||||| || || || |||||||
Sbjct: 932 atgttaacaaggatgggcgtctcaatgttctgtattcgacaccatctatctacaccgatg 991
Query: 853 caaaatatgctgcaaa 868
||||||||||||||||
Sbjct: 992 caaaatatgctgcaaa 1007
Score = 65.9 bits (33), Expect = 1e-008
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 234 ataaatggtggcatgtgcatgcacgatgaggcggctgtacactatattgacatgatcgat 293
||||||||||| ||||| ||||| |||||||| || ||| |||||||||||||| |||
Sbjct: 376 ataaatggtggaatgtgtatgcatgatgaggcaactccacattatattgacatgattgat 435
Query: 294 cagactaca 302
|||||||||
Sbjct: 436 cagactaca 444
Score = 46.1 bits (23), Expect = 0.010
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 349 ttggctggcagattgatccgtttgggcactctgcggttcaggcttaccttcttgg 403
|||| |||||||||||||| ||||| || ||||| || || |||||||| |||||
Sbjct: 491 ttggttggcagattgatccctttggacattctgcagtacaagcttacctgcttgg 545
Score = 46.1 bits (23), Expect = 0.010
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 12 tggctcaagaccgtagaccagtactacgtcggatccaacaactccat 58
||||| |||||||| || ||||||||||| || ||||| ||||||||
Sbjct: 154 tggcttaagaccgttgatcagtactacgtaggctccaataactccat 200
>emb|Y11767.1|ATALPMAP A.thaliana mRNA for alpha-mannosidase precursor
Length = 3186
Score = 71.9 bits (36), Expect = 2e-010
Identities = 201/256 (78%)
Strand = Plus / Plus
Query: 613 tccaggatgatccccttcttttcgattataatgttgaagaacgagtaaatgattttgttg 672
||||||||||||| || ||||| || || |||||| ||||| |||| || || ||||| |
Sbjct: 763 tccaggatgatcctctcctttttgactacaatgttcaagaaagagtcaacgactttgtag 822
Query: 673 ctgcagctgtagcacaggcaaatatcacgaggacaaatcatatcatgtttacaatgggaa 732
| ||||| | ||||||| ||| | || |||||||||||||| |||| ||||||||
Sbjct: 823 cagcagccctcgcacaggttaatgtgaccaggacaaatcatataatgtggttaatgggaa 882
Query: 733 cagacttcaaataccaatacgcagagagttggttcggaaatatggacaaactaattcact 792
| |||||| ||||| || ||| | |||||| || | || ||||| | ||||| |
Sbjct: 883 ctgacttccgttaccagtatgcatattcgtggttcagacagatagacaagtttattcatt 942
Query: 793 atgtgaacaaggatggccgtatccatgctctttattccacaccttccatttataccgatg 852
|||| ||||||||||| ||| || ||| ||| ||||| ||||| || || || |||||||
Sbjct: 943 atgttaacaaggatgggcgtctcaatgttctgtattcgacaccatctatctacaccgatg 1002
Query: 853 caaaatatgctgcaaa 868
||||||||||||||||
Sbjct: 1003 caaaatatgctgcaaa 1018
Score = 65.9 bits (33), Expect = 1e-008
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 234 ataaatggtggcatgtgcatgcacgatgaggcggctgtacactatattgacatgatcgat 293
||||||||||| ||||| ||||| |||||||| || ||| |||||||||||||| |||
Sbjct: 387 ataaatggtggaatgtgtatgcatgatgaggcaactccacattatattgacatgattgat 446
Query: 294 cagactaca 302
|||||||||
Sbjct: 447 cagactaca 455
Score = 46.1 bits (23), Expect = 0.010
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 349 ttggctggcagattgatccgtttgggcactctgcggttcaggcttaccttcttgg 403
|||| |||||||||||||| ||||| || ||||| || || |||||||| |||||
Sbjct: 502 ttggttggcagattgatccctttggacattctgcagtacaagcttacctgcttgg 556
Score = 46.1 bits (23), Expect = 0.010
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 12 tggctcaagaccgtagaccagtactacgtcggatccaacaactccat 58
||||| |||||||| || ||||||||||| || ||||| ||||||||
Sbjct: 165 tggcttaagaccgttgatcagtactacgtaggctccaataactccat 211
>ref|NM_113583.2| Arabidopsis thaliana alpha-mannosidase AT3G26720 mRNA, complete cds
Length = 3243
Score = 71.9 bits (36), Expect = 2e-010
Identities = 201/256 (78%)
Strand = Plus / Plus
Query: 613 tccaggatgatccccttcttttcgattataatgttgaagaacgagtaaatgattttgttg 672
||||||||||||| || ||||| || || |||||| ||||| |||| || || ||||| |
Sbjct: 805 tccaggatgatcctctcctttttgactacaatgttcaagaaagagtcaacgactttgtag 864
Query: 673 ctgcagctgtagcacaggcaaatatcacgaggacaaatcatatcatgtttacaatgggaa 732
| ||||| | ||||||| ||| | || |||||||||||||| |||| ||||||||
Sbjct: 865 cagcagccctcgcacaggttaatgtgaccaggacaaatcatataatgtggttaatgggaa 924
Query: 733 cagacttcaaataccaatacgcagagagttggttcggaaatatggacaaactaattcact 792
| |||||| ||||| || ||| | |||||| || | || ||||| | ||||| |
Sbjct: 925 ctgacttccgttaccagtatgcatattcgtggttcagacagatagacaagtttattcatt 984
Query: 793 atgtgaacaaggatggccgtatccatgctctttattccacaccttccatttataccgatg 852
|||| ||||||||||| ||| || ||| ||| ||||| ||||| || || || |||||||
Sbjct: 985 atgttaacaaggatgggcgtctcaatgttctgtattcgacaccatctatctacaccgatg 1044
Query: 853 caaaatatgctgcaaa 868
||||||||||||||||
Sbjct: 1045 caaaatatgctgcaaa 1060
Score = 65.9 bits (33), Expect = 1e-008
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 234 ataaatggtggcatgtgcatgcacgatgaggcggctgtacactatattgacatgatcgat 293
||||||||||| ||||| ||||| |||||||| || ||| |||||||||||||| |||
Sbjct: 429 ataaatggtggaatgtgtatgcatgatgaggcaactccacattatattgacatgattgat 488
Query: 294 cagactaca 302
|||||||||
Sbjct: 489 cagactaca 497
Score = 46.1 bits (23), Expect = 0.010
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 349 ttggctggcagattgatccgtttgggcactctgcggttcaggcttaccttcttgg 403
|||| |||||||||||||| ||||| || ||||| || || |||||||| |||||
Sbjct: 544 ttggttggcagattgatccctttggacattctgcagtacaagcttacctgcttgg 598
Score = 46.1 bits (23), Expect = 0.010
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 12 tggctcaagaccgtagaccagtactacgtcggatccaacaactccat 58
||||| |||||||| || ||||||||||| || ||||| ||||||||
Sbjct: 207 tggcttaagaccgttgatcagtactacgtaggctccaataactccat 253
>gb|AV821365.1|AV821365 AV821365 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-09-C16 5',
mRNA sequence
Length = 603
Score = 65.9 bits (33), Expect = 1e-008
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 234 ataaatggtggcatgtgcatgcacgatgaggcggctgtacactatattgacatgatcgat 293
||||||||||| ||||| ||||| |||||||| || ||| |||||||||||||| |||
Sbjct: 430 ataaatggtggaatgtgtatgcatgatgaggcaactccacattatattgacatgattgat 489
Query: 294 cagactaca 302
|||||||||
Sbjct: 490 cagactaca 498
Score = 46.1 bits (23), Expect = 0.010
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 349 ttggctggcagattgatccgtttgggcactctgcggttcaggcttaccttcttgg 403
|||| |||||||||||||| ||||| || ||||| || || |||||||| |||||
Sbjct: 545 ttggttggcagattgatccctttggacattctgcagtacaagcttacctgcttgg 599
Score = 46.1 bits (23), Expect = 0.010
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 12 tggctcaagaccgtagaccagtactacgtcggatccaacaactccat 58
||||| |||||||| || ||||||||||| || ||||| ||||||||
Sbjct: 208 tggcttaagaccgttgatcagtactacgtaggctccaataactccat 254
>gb|AV529226.1|AV529226 AV529226 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL31a05R 5', mRNA
sequence
Length = 548
Score = 65.9 bits (33), Expect = 1e-008
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 234 ataaatggtggcatgtgcatgcacgatgaggcggctgtacactatattgacatgatcgat 293
||||||||||| ||||| ||||| |||||||| || ||| |||||||||||||| |||
Sbjct: 410 ataaatggtggaatgtgtatgcatgatgaggcaactccacattatattgacatgattgat 469
Query: 294 cagactaca 302
|||||||||
Sbjct: 470 cagactaca 478
Score = 46.1 bits (23), Expect = 0.010
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 12 tggctcaagaccgtagaccagtactacgtcggatccaacaactccat 58
||||| |||||||| || ||||||||||| || ||||| ||||||||
Sbjct: 188 tggcttaagaccgttgatcagtactacgtaggctccaataactccat 234
>gb|AV529772.1|AV529772 AV529772 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL47b05R 5', mRNA
sequence
Length = 548
Score = 65.9 bits (33), Expect = 1e-008
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 234 ataaatggtggcatgtgcatgcacgatgaggcggctgtacactatattgacatgatcgat 293
||||||||||| ||||| ||||| |||||||| || ||| |||||||||||||| |||
Sbjct: 398 ataaatggtggaatgtgtatgcatgatgaggcaactccacattatattgacatgattgat 457
Query: 294 cagactaca 302
|||||||||
Sbjct: 458 cagactaca 466
Score = 46.1 bits (23), Expect = 0.010
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 12 tggctcaagaccgtagaccagtactacgtcggatccaacaactccat 58
||||| |||||||| || ||||||||||| || ||||| ||||||||
Sbjct: 176 tggcttaagaccgttgatcagtactacgtaggctccaataactccat 222
>gb|AV831034.1|AV831034 AV831034 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-83-A01 5',
mRNA sequence
Length = 612
Score = 63.9 bits (32), Expect = 4e-008
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 12 tggctcaagaccgtagaccagtactacgtcggatccaacaactccatccagg 63
|||||||||||||| ||||||||||| || || ||||||||||| |||||||
Sbjct: 282 tggctcaagaccgttgaccagtactatgttggctccaacaactctatccagg 333
Score = 42.1 bits (21), Expect = 0.16
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 234 ataaatggtggcatgtgcatgcacgatgaggcggctgtacactatattgacatgatcgat 293
||||||||||| ||||| ||||| ||||| || || ||||||||| || ||||| |||
Sbjct: 504 ataaatggtggtatgtgtatgcatgatgaagcagcaccacactatatagatatgattgat 563
Query: 294 cagac 298
|||||
Sbjct: 564 cagac 568
>gb|AV547373.1|AV547373 AV547373 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZL30e03F 3', mRNA sequence
Length = 620
Score = 63.9 bits (32), Expect = 4e-008
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 12 tggctcaagaccgtagaccagtactacgtcggatccaacaactccatccagg 63
|||||||||||||| ||||||||||| || || ||||||||||| |||||||
Sbjct: 232 tggctcaagaccgttgaccagtactatgttggctccaacaactctatccagg 283
Score = 42.1 bits (21), Expect = 0.16
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 234 ataaatggtggcatgtgcatgcacgatgaggcggctgtacactatattgacatgatcgat 293
||||||||||| ||||| ||||| ||||| || || ||||||||| || ||||| |||
Sbjct: 454 ataaatggtggtatgtgtatgcatgatgaagcagcaccacactatatagatatgattgat 513
Query: 294 cagac 298
|||||
Sbjct: 514 cagac 518
>gb|BP815259.1|BP815259 BP815259 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-38-E21 5',
mRNA sequence
Length = 389
Score = 63.9 bits (32), Expect = 4e-008
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 12 tggctcaagaccgtagaccagtactacgtcggatccaacaactccatccagg 63
|||||||||||||| ||||||||||| || || ||||||||||| |||||||
Sbjct: 248 tggctcaagaccgttgaccagtactatgttggctccaacaactctatccagg 299
>gb|AY099704.1| Arabidopsis thaliana alpha-mannosidase (At5g13980) mRNA, complete
cds
Length = 3290
Score = 63.9 bits (32), Expect = 4e-008
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 12 tggctcaagaccgtagaccagtactacgtcggatccaacaactccatccagg 63
|||||||||||||| ||||||||||| || || ||||||||||| |||||||
Sbjct: 281 tggctcaagaccgttgaccagtactatgttggctccaacaactctatccagg 332
Score = 56.0 bits (28), Expect = 1e-005
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 354 tggcagattgatccgtttgggcactctgcggttcaggcttaccttcttggcgcagaagta 413
|||||||||||||| ||||| || ||||| || ||||||||| | || |||||||||||
Sbjct: 623 tggcagattgatccctttggacattctgcagtgcaggcttacttgctaggcgcagaagtt 682
Query: 414 ggattcga 421
|| |||||
Sbjct: 683 ggcttcga 690
Score = 54.0 bits (27), Expect = 4e-005
Identities = 120/151 (79%)
Strand = Plus / Plus
Query: 601 attcccctgttgtccaggatgatccccttcttttcgattataatgttgaagaacgagtaa 660
||||||| |||||||| |||||||| || || ||||| |||||| |||| ||||| |
Sbjct: 870 attcccccgttgtccaagatgatcctgacctgtttgattacaatgttcaagagcgagtga 929
Query: 661 atgattttgttgctgcagctgtagcacaggcaaatatcacgaggacaaatcatatcatgt 720
||| ||||| ||||||||| | | ||||| || || || | | |||||| |||||||
Sbjct: 930 atgcctttgtagctgcagctttggatcaggccaacattactcgaataaatcacatcatgt 989
Query: 721 ttacaatgggaacagacttcaaataccaata 751
|||| ||||||||||| |||| ||||||||
Sbjct: 990 ttaccatgggaacagatttcaggtaccaata 1020
Score = 42.1 bits (21), Expect = 0.16
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 234 ataaatggtggcatgtgcatgcacgatgaggcggctgtacactatattgacatgatcgat 293
||||||||||| ||||| ||||| ||||| || || ||||||||| || ||||| |||
Sbjct: 503 ataaatggtggtatgtgtatgcatgatgaagcagcaccacactatatagatatgattgat 562
Query: 294 cagac 298
|||||
Sbjct: 563 cagac 567
>gb|BT000301.1| Arabidopsis thaliana alpha-mannosidase (At5g13980) mRNA, complete
cds
Length = 3127
Score = 63.9 bits (32), Expect = 4e-008
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 12 tggctcaagaccgtagaccagtactacgtcggatccaacaactccatccagg 63
|||||||||||||| ||||||||||| || || ||||||||||| |||||||
Sbjct: 151 tggctcaagaccgttgaccagtactatgttggctccaacaactctatccagg 202
Score = 56.0 bits (28), Expect = 1e-005
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 354 tggcagattgatccgtttgggcactctgcggttcaggcttaccttcttggcgcagaagta 413
|||||||||||||| ||||| || ||||| || ||||||||| | || |||||||||||
Sbjct: 493 tggcagattgatccctttggacattctgcagtgcaggcttacttgctaggcgcagaagtt 552
Query: 414 ggattcga 421
|| |||||
Sbjct: 553 ggcttcga 560
Score = 54.0 bits (27), Expect = 4e-005
Identities = 120/151 (79%)
Strand = Plus / Plus
Query: 601 attcccctgttgtccaggatgatccccttcttttcgattataatgttgaagaacgagtaa 660
||||||| |||||||| |||||||| || || ||||| |||||| |||| ||||| |
Sbjct: 740 attcccccgttgtccaagatgatcctgacctgtttgattacaatgttcaagagcgagtga 799
Query: 661 atgattttgttgctgcagctgtagcacaggcaaatatcacgaggacaaatcatatcatgt 720
||| ||||| ||||||||| | | ||||| || || || | | |||||| |||||||
Sbjct: 800 atgcctttgtagctgcagctttggatcaggccaacattactcgaataaatcacatcatgt 859
Query: 721 ttacaatgggaacagacttcaaataccaata 751
|||| ||||||||||| |||| ||||||||
Sbjct: 860 ttaccatgggaacagatttcaggtaccaata 890
Score = 42.1 bits (21), Expect = 0.16
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 234 ataaatggtggcatgtgcatgcacgatgaggcggctgtacactatattgacatgatcgat 293
||||||||||| ||||| ||||| ||||| || || ||||||||| || ||||| |||
Sbjct: 373 ataaatggtggtatgtgtatgcatgatgaagcagcaccacactatatagatatgattgat 432
Query: 294 cagac 298
|||||
Sbjct: 433 cagac 437
>dbj|AB005230.2| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MAC12
Length = 74613
Score = 63.9 bits (32), Expect = 4e-008
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 12 tggctcaagaccgtagaccagtactacgtcggatccaacaactccatccagg 63
|||||||||||||| ||||||||||| || || ||||||||||| |||||||
Sbjct: 59248 tggctcaagaccgttgaccagtactatgttggctccaacaactctatccagg 59299
Score = 56.0 bits (28), Expect = 1e-005
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 354 tggcagattgatccgtttgggcactctgcggttcaggcttaccttcttggcgcagaagta 413
|||||||||||||| ||||| || ||||| || ||||||||| | || ||||||||||||
Sbjct: 59923 tggcagattgatccctttggacattctgcagtgcaggcttacttgctaggcgcagaagta 59982
Score = 50.1 bits (25), Expect = 7e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 707 aaatcatatcatgtttacaatgggaacagacttcaaataccaata 751
|||||| ||||||||||| ||||||||||| |||| ||||||||
Sbjct: 60604 aaatcacatcatgtttaccatgggaacagatttcaggtaccaata 60648
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 63.9 bits (32), Expect = 4e-008
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 12 tggctcaagaccgtagaccagtactacgtcggatccaacaactccatccagg 63
|||||||||||||| ||||||||||| || || ||||||||||| |||||||
Sbjct: 4301751 tggctcaagaccgttgaccagtactatgttggctccaacaactctatccagg 4301802
Score = 56.0 bits (28), Expect = 1e-005
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 354 tggcagattgatccgtttgggcactctgcggttcaggcttaccttcttggcgcagaagta 413
|||||||||||||| ||||| || ||||| || ||||||||| | || ||||||||||||
Sbjct: 4302426 tggcagattgatccctttggacattctgcagtgcaggcttacttgctaggcgcagaagta 4302485
Score = 50.1 bits (25), Expect = 7e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 707 aaatcatatcatgtttacaatgggaacagacttcaaataccaata 751
|||||| ||||||||||| ||||||||||| |||| ||||||||
Sbjct: 4303107 aaatcacatcatgtttaccatgggaacagatttcaggtaccaata 4303151
>ref|NM_121401.4| Arabidopsis thaliana alpha-mannosidase AT5G13980 transcript variant
AT5G13980.2 mRNA, complete cds
Length = 3309
Score = 63.9 bits (32), Expect = 4e-008
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 12 tggctcaagaccgtagaccagtactacgtcggatccaacaactccatccagg 63
|||||||||||||| ||||||||||| || || ||||||||||| |||||||
Sbjct: 281 tggctcaagaccgttgaccagtactatgttggctccaacaactctatccagg 332
Score = 56.0 bits (28), Expect = 1e-005
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 354 tggcagattgatccgtttgggcactctgcggttcaggcttaccttcttggcgcagaagta 413
|||||||||||||| ||||| || ||||| || ||||||||| | || |||||||||||
Sbjct: 623 tggcagattgatccctttggacattctgcagtgcaggcttacttgctaggcgcagaagtt 682
Query: 414 ggattcga 421
|| |||||
Sbjct: 683 ggcttcga 690
Score = 54.0 bits (27), Expect = 4e-005
Identities = 120/151 (79%)
Strand = Plus / Plus
Query: 601 attcccctgttgtccaggatgatccccttcttttcgattataatgttgaagaacgagtaa 660
||||||| |||||||| |||||||| || || ||||| |||||| |||| ||||| |
Sbjct: 870 attcccccgttgtccaagatgatcctgacctgtttgattacaatgttcaagagcgagtga 929
Query: 661 atgattttgttgctgcagctgtagcacaggcaaatatcacgaggacaaatcatatcatgt 720
||| ||||| ||||||||| | | ||||| || || || | | |||||| |||||||
Sbjct: 930 atgcctttgtagctgcagctttggatcaggccaacattactcgaataaatcacatcatgt 989
Query: 721 ttacaatgggaacagacttcaaataccaata 751
|||| ||||||||||| |||| ||||||||
Sbjct: 990 ttaccatgggaacagatttcaggtaccaata 1020
Score = 42.1 bits (21), Expect = 0.16
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 234 ataaatggtggcatgtgcatgcacgatgaggcggctgtacactatattgacatgatcgat 293
||||||||||| ||||| ||||| ||||| || || ||||||||| || ||||| |||
Sbjct: 503 ataaatggtggtatgtgtatgcatgatgaagcagcaccacactatatagatatgattgat 562
Query: 294 cagac 298
|||||
Sbjct: 563 cagac 567
>ref|NM_001036801.1| Arabidopsis thaliana alpha-mannosidase AT5G13980 transcript variant
AT5G13980.3 mRNA, complete cds
Length = 3327
Score = 63.9 bits (32), Expect = 4e-008
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 12 tggctcaagaccgtagaccagtactacgtcggatccaacaactccatccagg 63
|||||||||||||| ||||||||||| || || ||||||||||| |||||||
Sbjct: 281 tggctcaagaccgttgaccagtactatgttggctccaacaactctatccagg 332
Score = 56.0 bits (28), Expect = 1e-005
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 354 tggcagattgatccgtttgggcactctgcggttcaggcttaccttcttggcgcagaagta 413
|||||||||||||| ||||| || ||||| || ||||||||| | || |||||||||||
Sbjct: 623 tggcagattgatccctttggacattctgcagtgcaggcttacttgctaggcgcagaagtt 682
Query: 414 ggattcga 421
|| |||||
Sbjct: 683 ggcttcga 690
Score = 54.0 bits (27), Expect = 4e-005
Identities = 120/151 (79%)
Strand = Plus / Plus
Query: 601 attcccctgttgtccaggatgatccccttcttttcgattataatgttgaagaacgagtaa 660
||||||| |||||||| |||||||| || || ||||| |||||| |||| ||||| |
Sbjct: 870 attcccccgttgtccaagatgatcctgacctgtttgattacaatgttcaagagcgagtga 929
Query: 661 atgattttgttgctgcagctgtagcacaggcaaatatcacgaggacaaatcatatcatgt 720
||| ||||| ||||||||| | | ||||| || || || | | |||||| |||||||
Sbjct: 930 atgcctttgtagctgcagctttggatcaggccaacattactcgaataaatcacatcatgt 989
Query: 721 ttacaatgggaacagacttcaaataccaata 751
|||| ||||||||||| |||| ||||||||
Sbjct: 990 ttaccatgggaacagatttcaggtaccaata 1020
Score = 42.1 bits (21), Expect = 0.16
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 234 ataaatggtggcatgtgcatgcacgatgaggcggctgtacactatattgacatgatcgat 293
||||||||||| ||||| ||||| ||||| || || ||||||||| || ||||| |||
Sbjct: 503 ataaatggtggtatgtgtatgcatgatgaagcagcaccacactatatagatatgattgat 562
Query: 294 cagac 298
|||||
Sbjct: 563 cagac 567
>ref|NM_180706.2| Arabidopsis thaliana alpha-mannosidase AT5G13980 transcript variant
AT5G13980.1 mRNA, complete cds
Length = 3296
Score = 63.9 bits (32), Expect = 4e-008
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 12 tggctcaagaccgtagaccagtactacgtcggatccaacaactccatccagg 63
|||||||||||||| ||||||||||| || || ||||||||||| |||||||
Sbjct: 281 tggctcaagaccgttgaccagtactatgttggctccaacaactctatccagg 332
Score = 56.0 bits (28), Expect = 1e-005
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 354 tggcagattgatccgtttgggcactctgcggttcaggcttaccttcttggcgcagaagta 413
|||||||||||||| ||||| || ||||| || ||||||||| | || |||||||||||
Sbjct: 623 tggcagattgatccctttggacattctgcagtgcaggcttacttgctaggcgcagaagtt 682
Query: 414 ggattcga 421
|| |||||
Sbjct: 683 ggcttcga 690
Score = 54.0 bits (27), Expect = 4e-005
Identities = 120/151 (79%)
Strand = Plus / Plus
Query: 601 attcccctgttgtccaggatgatccccttcttttcgattataatgttgaagaacgagtaa 660
||||||| |||||||| |||||||| || || ||||| |||||| |||| ||||| |
Sbjct: 870 attcccccgttgtccaagatgatcctgacctgtttgattacaatgttcaagagcgagtga 929
Query: 661 atgattttgttgctgcagctgtagcacaggcaaatatcacgaggacaaatcatatcatgt 720
||| ||||| ||||||||| | | ||||| || || || | | |||||| |||||||
Sbjct: 930 atgcctttgtagctgcagctttggatcaggccaacattactcgaataaatcacatcatgt 989
Query: 721 ttacaatgggaacagacttcaaataccaata 751
|||| ||||||||||| |||| ||||||||
Sbjct: 990 ttaccatgggaacagatttcaggtaccaata 1020
Score = 42.1 bits (21), Expect = 0.16
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 234 ataaatggtggcatgtgcatgcacgatgaggcggctgtacactatattgacatgatcgat 293
||||||||||| ||||| ||||| ||||| || || ||||||||| || ||||| |||
Sbjct: 503 ataaatggtggtatgtgtatgcatgatgaagcagcaccacactatatagatatgattgat 562
Query: 294 cagac 298
|||||
Sbjct: 563 cagac 567
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 63.9 bits (32), Expect = 4e-008
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 12 tggctcaagaccgtagaccagtactacgtcggatccaacaactccatccagg 63
|||||||||||||| ||||||||||| || || ||||||||||| |||||||
Sbjct: 4508778 tggctcaagaccgttgaccagtactatgttggctccaacaactctatccagg 4508829
Score = 56.0 bits (28), Expect = 1e-005
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 354 tggcagattgatccgtttgggcactctgcggttcaggcttaccttcttggcgcagaagta 413
|||||||||||||| ||||| || ||||| || ||||||||| | || ||||||||||||
Sbjct: 4509453 tggcagattgatccctttggacattctgcagtgcaggcttacttgctaggcgcagaagta 4509512
Score = 50.1 bits (25), Expect = 7e-004
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 707 aaatcatatcatgtttacaatgggaacagacttcaaataccaata 751
|||||| ||||||||||| ||||||||||| |||| ||||||||
Sbjct: 4510134 aaatcacatcatgtttaccatgggaacagatttcaggtaccaata 4510178
>gb|CW795983.1|CW795983 WiscDsLox384B1 Arabidopsis thaliana T-DNA insertion flanking
sequences Arabidopsis thaliana genomic, DNA sequence
Length = 757
Score = 61.9 bits (31), Expect = 2e-007
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 236 aaatggtggcatgtgcatgcacgatgaggcggctgtacactatattgacatgatcgatca 295
||||||||| ||||| ||||| |||||||| || ||| |||||||||||||| |||||
Sbjct: 269 aaatggtggaatgtgtatgcatgatgaggcaactccacattatattgacatgattgatca 328
Query: 296 gactaca 302
|||||||
Sbjct: 329 gactaca 335
Score = 46.1 bits (23), Expect = 0.010
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 349 ttggctggcagattgatccgtttgggcactctgcggttcaggcttaccttcttgg 403
|||| |||||||||||||| ||||| || ||||| || || |||||||| |||||
Sbjct: 382 ttggttggcagattgatccctttggacattctgcagtacaagcttacctgcttgg 436
>dbj|AB026648.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MLJ15
Length = 43481
Score = 61.9 bits (31), Expect = 2e-007
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 236 aaatggtggcatgtgcatgcacgatgaggcggctgtacactatattgacatgatcgatca 295
||||||||| ||||| ||||| |||||||| || ||| |||||||||||||| |||||
Sbjct: 27271 aaatggtggaatgtgtatgcatgatgaggcaactccacattatattgacatgattgatca 27330
Query: 296 gactaca 302
|||||||
Sbjct: 27331 gactaca 27337
Score = 54.0 bits (27), Expect = 4e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 802 aggatggccgtatccatgctctttattccacaccttccatttataccgatgcaaaatatg 861
||||||| ||| || ||| ||| ||||| ||||| || || || ||||||||||||||||
Sbjct: 28307 aggatgggcgtctcaatgttctgtattcgacaccatctatctacaccgatgcaaaatatg 28366
Query: 862 ctgcaaa 868
|||||||
Sbjct: 28367 ctgcaaa 28373
Score = 46.1 bits (23), Expect = 0.010
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 349 ttggctggcagattgatccgtttgggcactctgcggttcaggcttaccttcttgg 403
|||| |||||||||||||| ||||| || ||||| || || |||||||| |||||
Sbjct: 27384 ttggttggcagattgatccctttggacattctgcagtacaagcttacctgcttgg 27438
Score = 46.1 bits (23), Expect = 0.010
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 12 tggctcaagaccgtagaccagtactacgtcggatccaacaactccat 58
||||| |||||||| || ||||||||||| || ||||| ||||||||
Sbjct: 26808 tggcttaagaccgttgatcagtactacgtaggctccaataactccat 26854
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 61.9 bits (31), Expect = 2e-007
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 236 aaatggtggcatgtgcatgcacgatgaggcggctgtacactatattgacatgatcgatca 295
||||||||| ||||| ||||| |||||||| || ||| |||||||||||||| |||||
Sbjct: 9753761 aaatggtggaatgtgtatgcatgatgaggcaactccacattatattgacatgattgatca 9753820
Query: 296 gactaca 302
|||||||
Sbjct: 9753821 gactaca 9753827
Score = 54.0 bits (27), Expect = 4e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 802 aggatggccgtatccatgctctttattccacaccttccatttataccgatgcaaaatatg 861
||||||| ||| || ||| ||| ||||| ||||| || || || ||||||||||||||||
Sbjct: 9754797 aggatgggcgtctcaatgttctgtattcgacaccatctatctacaccgatgcaaaatatg 9754856
Query: 862 ctgcaaa 868
|||||||
Sbjct: 9754857 ctgcaaa 9754863
Score = 46.1 bits (23), Expect = 0.010
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 349 ttggctggcagattgatccgtttgggcactctgcggttcaggcttaccttcttgg 403
|||| |||||||||||||| ||||| || ||||| || || |||||||| |||||
Sbjct: 9753874 ttggttggcagattgatccctttggacattctgcagtacaagcttacctgcttgg 9753928
Score = 46.1 bits (23), Expect = 0.010
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 12 tggctcaagaccgtagaccagtactacgtcggatccaacaactccat 58
||||| |||||||| || ||||||||||| || ||||| ||||||||
Sbjct: 9753298 tggcttaagaccgttgatcagtactacgtaggctccaataactccat 9753344
>emb|X98130.1|AT81KBGEN Arabidopsis thaliana 81kb genomic sequence
Length = 81493
Score = 61.9 bits (31), Expect = 2e-007
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 236 aaatggtggcatgtgcatgcacgatgaggcggctgtacactatattgacatgatcgatca 295
||||||||| ||||| ||||| |||||||| || ||| |||||||||||||| |||||
Sbjct: 69509 aaatggtggaatgtgtatgcatgatgaggcaactccacattatattgacatgattgatca 69568
Query: 296 gactaca 302
|||||||
Sbjct: 69569 gactaca 69575
Score = 54.0 bits (27), Expect = 4e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 802 aggatggccgtatccatgctctttattccacaccttccatttataccgatgcaaaatatg 861
||||||| ||| || ||| ||| ||||| ||||| || || || ||||||||||||||||
Sbjct: 70545 aggatgggcgtctcaatgttctgtattcgacaccatctatctacaccgatgcaaaatatg 70604
Query: 862 ctgcaaa 868
|||||||
Sbjct: 70605 ctgcaaa 70611
Score = 46.1 bits (23), Expect = 0.010
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 349 ttggctggcagattgatccgtttgggcactctgcggttcaggcttaccttcttgg 403
|||| |||||||||||||| ||||| || ||||| || || |||||||| |||||
Sbjct: 69622 ttggttggcagattgatccctttggacattctgcagtacaagcttacctgcttgg 69676
Score = 46.1 bits (23), Expect = 0.010
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 12 tggctcaagaccgtagaccagtactacgtcggatccaacaactccat 58
||||| |||||||| || ||||||||||| || ||||| ||||||||
Sbjct: 69046 tggcttaagaccgttgatcagtactacgtaggctccaataactccat 69092
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 61.9 bits (31), Expect = 2e-007
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 236 aaatggtggcatgtgcatgcacgatgaggcggctgtacactatattgacatgatcgatca 295
||||||||| ||||| ||||| |||||||| || ||| |||||||||||||| |||||
Sbjct: 9818560 aaatggtggaatgtgtatgcatgatgaggcaactccacattatattgacatgattgatca 9818619
Query: 296 gactaca 302
|||||||
Sbjct: 9818620 gactaca 9818626
Score = 54.0 bits (27), Expect = 4e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 802 aggatggccgtatccatgctctttattccacaccttccatttataccgatgcaaaatatg 861
||||||| ||| || ||| ||| ||||| ||||| || || || ||||||||||||||||
Sbjct: 9819596 aggatgggcgtctcaatgttctgtattcgacaccatctatctacaccgatgcaaaatatg 9819655
Query: 862 ctgcaaa 868
|||||||
Sbjct: 9819656 ctgcaaa 9819662
Score = 46.1 bits (23), Expect = 0.010
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 349 ttggctggcagattgatccgtttgggcactctgcggttcaggcttaccttcttgg 403
|||| |||||||||||||| ||||| || ||||| || || |||||||| |||||
Sbjct: 9818673 ttggttggcagattgatccctttggacattctgcagtacaagcttacctgcttgg 9818727
Score = 46.1 bits (23), Expect = 0.010
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 12 tggctcaagaccgtagaccagtactacgtcggatccaacaactccat 58
||||| |||||||| || ||||||||||| || ||||| ||||||||
Sbjct: 9818097 tggcttaagaccgttgatcagtactacgtaggctccaataactccat 9818143
>emb|AJ593532.1| Arabidopsis thaliana T-DNA flanking sequence, left border, clone
382C07, genomic survey sequence
Length = 828
Score = 56.0 bits (28), Expect = 1e-005
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 354 tggcagattgatccgtttgggcactctgcggttcaggcttaccttcttggcgcagaagta 413
|||||||||||||| ||||| || ||||| || ||||||||| | || ||||||||||||
Sbjct: 199 tggcagattgatccctttggacattctgcagtgcaggcttacttgctaggcgcagaagta 258
>gb|AV528984.1|AV528984 AV528984 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL24e04R 5', mRNA
sequence
Length = 458
Score = 56.0 bits (28), Expect = 1e-005
Identities = 58/68 (85%)
Strand = Plus / Plus
Query: 354 tggcagattgatccgtttgggcactctgcggttcaggcttaccttcttggcgcagaagta 413
|||||||||||||| ||||| || ||||| || ||||||||| | || |||||||||||
Sbjct: 315 tggcagattgatccctttggacattctgcagtgcaggcttacttgctaggcgcagaagtt 374
Query: 414 ggattcga 421
|| |||||
Sbjct: 375 ggcttcga 382
Score = 42.1 bits (21), Expect = 0.16
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 234 ataaatggtggcatgtgcatgcacgatgaggcggctgtacactatattgacatgatcgat 293
||||||||||| ||||| ||||| ||||| || || ||||||||| || ||||| |||
Sbjct: 195 ataaatggtggtatgtgtatgcatgatgaagcagcaccacactatatagatatgattgat 254
Query: 294 cagac 298
|||||
Sbjct: 255 cagac 259
>gb|BP804444.1|BP804444 BP804444 RAFL16 Arabidopsis thaliana cDNA clone RAFL24-01-O05 5',
mRNA sequence
Length = 370
Score = 52.0 bits (26), Expect = 2e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 12 tggctcaagaccgtagaccagtactacgtcggatccaacaac 53
|||||||||||||| ||||||||||| || || |||||||||
Sbjct: 266 tggctcaagaccgttgaccagtactatgttggctccaacaac 307
>gb|BP808017.1|BP808017 BP808017 RAFL16 Arabidopsis thaliana cDNA clone RAFL24-16-B21 5',
mRNA sequence
Length = 403
Score = 46.1 bits (23), Expect = 0.010
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 12 tggctcaagaccgtagaccagtactacgtcggatccaacaactccat 58
||||| |||||||| || ||||||||||| || ||||| ||||||||
Sbjct: 282 tggcttaagaccgttgatcagtactacgtaggctccaataactccat 328
>gb|BP808964.1|BP808964 BP808964 RAFL16 Arabidopsis thaliana cDNA clone RAFL24-19-M03 5',
mRNA sequence
Length = 389
Score = 46.1 bits (23), Expect = 0.010
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 12 tggctcaagaccgtagaccagtactacgtcggatccaacaactccat 58
||||| |||||||| || ||||||||||| || ||||| ||||||||
Sbjct: 206 tggcttaagaccgtggatcagtactacgtaggctccaataactccat 252
>gb|BP809064.1|BP809064 BP809064 RAFL16 Arabidopsis thaliana cDNA clone RAFL24-20-C11 5',
mRNA sequence
Length = 401
Score = 46.1 bits (23), Expect = 0.010
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 12 tggctcaagaccgtagaccagtactacgtcggatccaacaactccat 58
||||| |||||||| || ||||||||||| || ||||| ||||||||
Sbjct: 212 tggcttaagaccgttgatcagtactacgtaggctccaataactccat 258
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 466,901
Number of Sequences: 1013581
Number of extensions: 466901
Number of successful extensions: 35013
Number of sequences better than 0.5: 30
Number of HSP's better than 0.5 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34080
Number of HSP's gapped (non-prelim): 933
length of query: 888
length of database: 908,940,872
effective HSP length: 20
effective length of query: 868
effective length of database: 888,669,252
effective search space: 771364910736
effective search space used: 771364910736
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)