BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5110719.2.1
(581 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY084725.1| Arabidopsis thaliana clone 115924 mRNA, comp... 64 3e-008
gb|T76484.1|T76484 11262 Lambda-PRL2 Arabidopsis thaliana c... 58 2e-006
gb|AV821757.1|AV821757 AV821757 RAFL4 Arabidopsis thaliana ... 56 7e-006
gb|AV519152.1|AV519152 AV519152 Arabidopsis thaliana aboveg... 56 7e-006
gb|DR750364.1|DR750364 60-L021131-065-005-D08-SeLB MPIZ-ADI... 56 7e-006
gb|DR750528.1|DR750528 52-L021131-065-005-D07-SeLB MPIZ-ADI... 56 7e-006
gb|DR750673.1|DR750673 44-L021131-065-005-D06-SeLB MPIZ-ADI... 56 7e-006
gb|DR750816.1|DR750816 37-L021131-065-005-E05-SeLB MPIZ-ADI... 56 7e-006
gb|DR750836.1|DR750836 36-L021131-065-005-D05-SeLB MPIZ-ADI... 56 7e-006
gb|DR751172.1|DR751172 20-L021127-065-005-D03-SeLA MPIZ-ADI... 56 7e-006
gb|DR751330.1|DR751330 12-L021127-065-005-D02-SeLA MPIZ-ADI... 56 7e-006
gb|DR751331.1|DR751331 12-L021131-065-005-D02-SeLB MPIZ-ADI... 56 7e-006
gb|DR751478.1|DR751478 04-L021127-065-005-D01-SeLA MPIZ-ADI... 56 7e-006
gb|AF370550.1|AF370550 Arabidopsis thaliana transfactor-lik... 56 7e-006
gb|AY050889.1| Arabidopsis thaliana unknown protein (At3g13... 56 7e-006
gb|AY096674.1| Arabidopsis thaliana unknown protein (At3g13... 56 7e-006
gb|BT000013.1| Arabidopsis thaliana transfactor-like protei... 56 7e-006
gb|AY084738.1| Arabidopsis thaliana clone 116381 mRNA, comp... 56 7e-006
emb|BX823916.1|CNS0A6LP Arabidopsis thaliana Full-length cD... 56 7e-006
emb|BX822690.1|CNS0A70W Arabidopsis thaliana Full-length cD... 56 7e-006
emb|BX824456.1|CNS0A6UZ Arabidopsis thaliana Full-length cD... 56 7e-006
emb|BX823158.1|CNS0A7AE Arabidopsis thaliana Full-length cD... 56 7e-006
emb|BX824693.1|CNS0A7BL Arabidopsis thaliana Full-length cD... 56 7e-006
ref|NM_126168.2| Arabidopsis thaliana transcription factor ... 56 7e-006
ref|NM_112141.2| Arabidopsis thaliana transcription factor ... 56 7e-006
ref|NM_201656.1| Arabidopsis thaliana transcription factor ... 56 7e-006
ref|NM_202569.1| Arabidopsis thaliana unknown protein AT3G1... 56 7e-006
gb|DR751170.1|DR751170 20-L021131-065-005-D03-SeLB MPIZ-ADI... 50 4e-004
emb|BX820061.1|CNS0A9EL Arabidopsis thaliana Full-length cD... 50 4e-004
emb|BX820374.1|CNS0A9NR Arabidopsis thaliana Full-length cD... 50 4e-004
emb|BX819609.1|CNS0AAEE Arabidopsis thaliana Full-length cD... 50 4e-004
gb|CW839198.1|CW839198 GT7871.Ds3.07.23.2003.jx17.676 Arabi... 44 0.026
gb|AY199709.1|AY199709 AY199709 Arabidopsis thaliana Landsb... 44 0.026
gb|AY202904.1|AY202904 AY202904 Arabidopsis thaliana Landsb... 44 0.026
gb|AI995135.1|AI995135 701502242 A. thaliana, Ohio State cl... 44 0.026
gb|DR750662.1|DR750662 45-L021127-065-005-E06-SeLA MPIZ-ADI... 44 0.026
gb|DR751479.1|DR751479 04-L021131-065-005-D01-SeLB MPIZ-ADI... 44 0.026
gb|AC006837.16| Arabidopsis thaliana chromosome 2 BAC F23H1... 44 0.026
emb|BX820595.1|CNS0A9I8 Arabidopsis thaliana Full-length cD... 44 0.026
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 44 0.026
>gb|AY084725.1| Arabidopsis thaliana clone 115924 mRNA, complete sequence
Length = 1203
Score = 63.9 bits (32), Expect = 3e-008
Identities = 212/272 (77%)
Strand = Plus / Plus
Query: 3 ttaacaatataccatgtaaaaagtcacttgcagaaatacagactagcaaagtatattcct 62
||||| ||||| ||||| || |||||||| |||||||| |||| ||||||||| ||||
Sbjct: 365 ttaactatatatcatgtcaagagtcacttacagaaatatcgacttgcaaagtatcttcca 424
Query: 63 gatgcttcaactgatgggaacaagaccgataacaaagacccaggagatttgcttgccgga 122
||| | || |||| ||||| || || ||||| ||||| | |||||| |||| | ||
Sbjct: 425 gattcgtcttctgaagggaaaaaaactgataagaaagaatctggagatatgctctctggg 484
Query: 123 cttgagggatcctctggattgcagatatctgaagccctcaaactgcagatggaggtccaa 182
| || || || || ||| |||||||| ||||||||||||| |||||||||| || ||
Sbjct: 485 ttggacggctcgtcgggaatgcagataactgaagccctcaagttgcagatggaagttcag 544
Query: 183 aagcggctgcacgaacagttagaagtacaaaggcagctgcagttacgaattgaggctcag 242
|| || ||||||| || ||||||| ||||| |||||||| |||| || || || ||
Sbjct: 545 aaacgattgcacgagcaactagaagtgcaaagacagctgcaactacggatagaagcacaa 604
Query: 243 ggaaagtacctccagaagatcatcgaagagca 274
||||||||| | ||||||| || ||||||||
Sbjct: 605 ggaaagtacttgaagaagataattgaagagca 636
>gb|T76484.1|T76484 11262 Lambda-PRL2 Arabidopsis thaliana cDNA clone 153I5T7, mRNA
sequence
Length = 426
Score = 58.0 bits (29), Expect = 2e-006
Identities = 107/133 (80%)
Strand = Plus / Plus
Query: 142 tgcagatatctgaagccctcaaactgcagatggaggtccaaaagcggctgcacgaacagt 201
|||||||| ||||||||||||| |||||||||| || || || || ||||||| ||
Sbjct: 77 tgcagataactgaagccctcaagttgcagatggaagttcagaaacgattgcacgagcaac 136
Query: 202 tagaagtacaaaggcagctgcagttacgaattgaggctcagggaaagtacctccagaaga 261
||||||| ||||| |||||||| |||| || || || || ||||||||| | ||||||
Sbjct: 137 tagaagtgcaaagacagctgcaactacggatagaagcacaaggaaagtacttgaagaaga 196
Query: 262 tcatcgaagagca 274
| || ||||||||
Sbjct: 197 taattgaagagca 209
>gb|AV821757.1|AV821757 AV821757 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-16-A07 5',
mRNA sequence
Length = 662
Score = 56.0 bits (28), Expect = 7e-006
Identities = 211/272 (77%)
Strand = Plus / Plus
Query: 3 ttaacaatataccatgtaaaaagtcacttgcagaaatacagactagcaaagtatattcct 62
||||| ||||| ||||| || |||||||| |||||||| |||| ||||||||| ||||
Sbjct: 314 ttaactatatatcatgtcaagagtcacttacagaaatatcgacttgcaaagtatcttcca 373
Query: 63 gatgcttcaactgatgggaacaagaccgataacaaagacccaggagatttgcttgccgga 122
||| | || |||| ||||| || || ||||| ||||| | |||||| |||| | ||
Sbjct: 374 gattcgtcttctgaagggaaaaaaactgataagaaagaatctggagatatgctctctggg 433
Query: 123 cttgagggatcctctggattgcagatatctgaagccctcaaactgcagatggaggtccaa 182
| || || || || ||| |||||||| ||||||||||||| |||||||||| || ||
Sbjct: 434 ttggacggctcgtcgggaatgcagataactgaagccctcaagttgcagatggaagttcag 493
Query: 183 aagcggctgcacgaacagttagaagtacaaaggcagctgcagttacgaattgaggctcag 242
|| || | ||||| || ||||||| ||||| |||||||| |||| || || || ||
Sbjct: 494 aaacgattacacgagcaactagaagtgcaaagacagctgcaactacggatagaagcacaa 553
Query: 243 ggaaagtacctccagaagatcatcgaagagca 274
||||||||| | ||||||| || ||||||||
Sbjct: 554 ggaaagtacttgaagaagataattgaagagca 585
>gb|AV519152.1|AV519152 AV519152 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APD49f02F 3', mRNA
sequence
Length = 616
Score = 56.0 bits (28), Expect = 7e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 15 catgtaaaaagtcacttgcagaaatacagactagcaaagtatat 58
||||||||||| ||||||||||| || |||||||| ||||||||
Sbjct: 454 catgtaaaaagccacttgcagaagtatagactagccaagtatat 497
>gb|DR750364.1|DR750364 60-L021131-065-005-D08-SeLB MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 005-D08, mRNA sequence
Length = 897
Score = 56.0 bits (28), Expect = 7e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 15 catgtaaaaagtcacttgcagaaatacagactagcaaagtatat 58
||||||||||| ||||||||||| || |||||||| ||||||||
Sbjct: 560 catgtaaaaagccacttgcagaagtatagactagccaagtatat 517
>gb|DR750528.1|DR750528 52-L021131-065-005-D07-SeLB MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 005-D07, mRNA sequence
Length = 923
Score = 56.0 bits (28), Expect = 7e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 15 catgtaaaaagtcacttgcagaaatacagactagcaaagtatat 58
||||||||||| ||||||||||| || |||||||| ||||||||
Sbjct: 586 catgtaaaaagccacttgcagaagtatagactagccaagtatat 543
>gb|DR750673.1|DR750673 44-L021131-065-005-D06-SeLB MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 005-D06, mRNA sequence
Length = 881
Score = 56.0 bits (28), Expect = 7e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 15 catgtaaaaagtcacttgcagaaatacagactagcaaagtatat 58
||||||||||| ||||||||||| || |||||||| ||||||||
Sbjct: 587 catgtaaaaagccacttgcagaagtatagactagccaagtatat 544
>gb|DR750816.1|DR750816 37-L021131-065-005-E05-SeLB MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 005-E05, mRNA sequence
Length = 882
Score = 56.0 bits (28), Expect = 7e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 15 catgtaaaaagtcacttgcagaaatacagactagcaaagtatat 58
||||||||||| ||||||||||| || |||||||| ||||||||
Sbjct: 588 catgtaaaaagccacttgcagaagtatagactagccaagtatat 545
>gb|DR750836.1|DR750836 36-L021131-065-005-D05-SeLB MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 005-D05, mRNA sequence
Length = 865
Score = 56.0 bits (28), Expect = 7e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 15 catgtaaaaagtcacttgcagaaatacagactagcaaagtatat 58
||||||||||| ||||||||||| || |||||||| ||||||||
Sbjct: 593 catgtaaaaagccacttgcagaagtatagactagccaagtatat 550
>gb|DR751172.1|DR751172 20-L021127-065-005-D03-SeLA MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 005-D03, mRNA sequence
Length = 742
Score = 56.0 bits (28), Expect = 7e-006
Identities = 211/272 (77%)
Strand = Plus / Plus
Query: 3 ttaacaatataccatgtaaaaagtcacttgcagaaatacagactagcaaagtatattcct 62
||||| ||||| ||||| || |||||||| |||||||| |||| ||||||||| ||||
Sbjct: 235 ttaactatatatcatgtcaagagtcacttacagaaatatcgacttgcaaagtatcttcca 294
Query: 63 gatgcttcaactgatgggaacaagaccgataacaaagacccaggagatttgcttgccgga 122
||| | || |||| ||||| || || ||||| ||||| | |||||| |||| | ||
Sbjct: 295 gattcgtcttctgaagggaaaaaaactgataagaaagaatctggagatatgctctctggg 354
Query: 123 cttgagggatcctctggattgcagatatctgaagccctcaaactgcagatggaggtccaa 182
| || || || || ||| |||||||| ||||||||||||| |||||||||| || ||
Sbjct: 355 ttggacggctcgtcgggaatgcagataactgaagccctcaagttgcagatggaagttcag 414
Query: 183 aagcggctgcacgaacagttagaagtacaaaggcagctgcagttacgaattgaggctcag 242
|| || | ||||| || ||||||| ||||| |||||||| |||| || || || ||
Sbjct: 415 aaacgattacacgagcaactagaagtgcaaagacagctgcaactacggatagaagcacaa 474
Query: 243 ggaaagtacctccagaagatcatcgaagagca 274
||||||||| | ||||||| || ||||||||
Sbjct: 475 ggaaagtacttgaagaagataattgaagagca 506
>gb|DR751330.1|DR751330 12-L021127-065-005-D02-SeLA MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 005-D02, mRNA sequence
Length = 796
Score = 56.0 bits (28), Expect = 7e-006
Identities = 211/272 (77%)
Strand = Plus / Plus
Query: 3 ttaacaatataccatgtaaaaagtcacttgcagaaatacagactagcaaagtatattcct 62
||||| ||||| ||||| || |||||||| |||||||| |||| ||||||||| ||||
Sbjct: 233 ttaactatatatcatgtcaagagtcacttacagaaatatcgacttgcaaagtatcttcca 292
Query: 63 gatgcttcaactgatgggaacaagaccgataacaaagacccaggagatttgcttgccgga 122
||| | || |||| ||||| || || ||||| ||||| | |||||| |||| | ||
Sbjct: 293 gattcgtcttctgaagggaaaaaaactgataagaaagaatctggagatatgctctctggg 352
Query: 123 cttgagggatcctctggattgcagatatctgaagccctcaaactgcagatggaggtccaa 182
| || || || || ||| |||||||| ||||||||||||| |||||||||| || ||
Sbjct: 353 ttggacggctcgtcgggaatgcagataactgaagccctcaagttgcagatggaagttcag 412
Query: 183 aagcggctgcacgaacagttagaagtacaaaggcagctgcagttacgaattgaggctcag 242
|| || | ||||| || ||||||| ||||| |||||||| |||| || || || ||
Sbjct: 413 aaacgattacacgagcaactagaagtgcaaagacagctgcaactacggatagaagcacaa 472
Query: 243 ggaaagtacctccagaagatcatcgaagagca 274
||||||||| | ||||||| || ||||||||
Sbjct: 473 ggaaagtacttgaagaagataattgaagagca 504
>gb|DR751331.1|DR751331 12-L021131-065-005-D02-SeLB MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 005-D02, mRNA sequence
Length = 803
Score = 56.0 bits (28), Expect = 7e-006
Identities = 211/272 (77%)
Strand = Plus / Minus
Query: 3 ttaacaatataccatgtaaaaagtcacttgcagaaatacagactagcaaagtatattcct 62
||||| ||||| ||||| || |||||||| |||||||| |||| ||||||||| ||||
Sbjct: 730 ttaactatatatcatgtcaagagtcacttacagaaatatcgacttgcaaagtatcttcca 671
Query: 63 gatgcttcaactgatgggaacaagaccgataacaaagacccaggagatttgcttgccgga 122
||| | || |||| ||||| || || ||||| ||||| | |||||| |||| | ||
Sbjct: 670 gattcgtcttctgaagggaaaaaaactgataagaaagaatctggagatatgctctctggg 611
Query: 123 cttgagggatcctctggattgcagatatctgaagccctcaaactgcagatggaggtccaa 182
| || || || || ||| |||||||| ||||||||||||| |||||||||| || ||
Sbjct: 610 ttggacggctcgtcgggaatgcagataactgaagccctcaagttgcagatggaagttcag 551
Query: 183 aagcggctgcacgaacagttagaagtacaaaggcagctgcagttacgaattgaggctcag 242
|| || | ||||| || ||||||| ||||| |||||||| |||| || || || ||
Sbjct: 550 aaacgattacacgagcaactagaagtgcaaagacagctgcaactacggatagaagcacaa 491
Query: 243 ggaaagtacctccagaagatcatcgaagagca 274
||||||||| | ||||||| || ||||||||
Sbjct: 490 ggaaagtacttgaagaagataattgaagagca 459
>gb|DR751478.1|DR751478 04-L021127-065-005-D01-SeLA MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 005-D01, mRNA sequence
Length = 730
Score = 56.0 bits (28), Expect = 7e-006
Identities = 211/272 (77%)
Strand = Plus / Plus
Query: 3 ttaacaatataccatgtaaaaagtcacttgcagaaatacagactagcaaagtatattcct 62
||||| ||||| ||||| || |||||||| |||||||| |||| ||||||||| ||||
Sbjct: 234 ttaactatatatcatgtcaagagtcacttacagaaatatcgacttgcaaagtatcttcca 293
Query: 63 gatgcttcaactgatgggaacaagaccgataacaaagacccaggagatttgcttgccgga 122
||| | || |||| ||||| || || ||||| ||||| | |||||| |||| | ||
Sbjct: 294 gattcgtcttctgaagggaaaaaaactgataagaaagaatctggagatatgctctctggg 353
Query: 123 cttgagggatcctctggattgcagatatctgaagccctcaaactgcagatggaggtccaa 182
| || || || || ||| |||||||| ||||||||||||| |||||||||| || ||
Sbjct: 354 ttggacggctcgtcgggaatgcagataactgaagccctcaagttgcagatggaagttcag 413
Query: 183 aagcggctgcacgaacagttagaagtacaaaggcagctgcagttacgaattgaggctcag 242
|| || | ||||| || ||||||| ||||| |||||||| |||| || || || ||
Sbjct: 414 aaacgattacacgagcaactagaagtgcaaagacagctgcaactacggatagaagcacaa 473
Query: 243 ggaaagtacctccagaagatcatcgaagagca 274
||||||||| | ||||||| || ||||||||
Sbjct: 474 ggaaagtacttgaagaagataattgaagagca 505
>gb|AF370550.1|AF370550 Arabidopsis thaliana transfactor-like protein (At2g01060; F23H14.3)
mRNA, complete cds
Length = 1182
Score = 56.0 bits (28), Expect = 7e-006
Identities = 211/272 (77%)
Strand = Plus / Plus
Query: 3 ttaacaatataccatgtaaaaagtcacttgcagaaatacagactagcaaagtatattcct 62
||||| ||||| ||||| || |||||||| |||||||| |||| ||||||||| ||||
Sbjct: 314 ttaactatatatcatgtcaagagtcacttacagaaatatcgacttgcaaagtatcttcca 373
Query: 63 gatgcttcaactgatgggaacaagaccgataacaaagacccaggagatttgcttgccgga 122
||| | || |||| ||||| || || ||||| ||||| | |||||| |||| | ||
Sbjct: 374 gattcgtcttctgaagggaaaaaaactgataagaaagaatctggagatatgctctctggg 433
Query: 123 cttgagggatcctctggattgcagatatctgaagccctcaaactgcagatggaggtccaa 182
| || || || || ||| |||||||| ||||||||||||| |||||||||| || ||
Sbjct: 434 ttggacggctcgtcgggaatgcagataactgaagccctcaagttgcagatggaagttcag 493
Query: 183 aagcggctgcacgaacagttagaagtacaaaggcagctgcagttacgaattgaggctcag 242
|| || | ||||| || ||||||| ||||| |||||||| |||| || || || ||
Sbjct: 494 aaacgattacacgagcaactagaagtgcaaagacagctgcaactacggatagaagcacaa 553
Query: 243 ggaaagtacctccagaagatcatcgaagagca 274
||||||||| | ||||||| || ||||||||
Sbjct: 554 ggaaagtacttgaagaagataattgaagagca 585
>gb|AY050889.1| Arabidopsis thaliana unknown protein (At3g13040) mRNA, complete cds
Length = 1758
Score = 56.0 bits (28), Expect = 7e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 15 catgtaaaaagtcacttgcagaaatacagactagcaaagtatat 58
||||||||||| ||||||||||| || |||||||| ||||||||
Sbjct: 1078 catgtaaaaagccacttgcagaagtatagactagccaagtatat 1121
>gb|AY096674.1| Arabidopsis thaliana unknown protein (At3g13040) mRNA, complete cds
Length = 1381
Score = 56.0 bits (28), Expect = 7e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 15 catgtaaaaagtcacttgcagaaatacagactagcaaagtatat 58
||||||||||| ||||||||||| || |||||||| ||||||||
Sbjct: 853 catgtaaaaagccacttgcagaagtatagactagccaagtatat 896
>gb|BT000013.1| Arabidopsis thaliana transfactor-like protein (At2g01060) mRNA,
complete cds
Length = 975
Score = 56.0 bits (28), Expect = 7e-006
Identities = 211/272 (77%)
Strand = Plus / Plus
Query: 3 ttaacaatataccatgtaaaaagtcacttgcagaaatacagactagcaaagtatattcct 62
||||| ||||| ||||| || |||||||| |||||||| |||| ||||||||| ||||
Sbjct: 163 ttaactatatatcatgtcaagagtcacttacagaaatatcgacttgcaaagtatcttcca 222
Query: 63 gatgcttcaactgatgggaacaagaccgataacaaagacccaggagatttgcttgccgga 122
||| | || |||| ||||| || || ||||| ||||| | |||||| |||| | ||
Sbjct: 223 gattcgtcttctgaagggaaaaaaactgataagaaagaatctggagatatgctctctggg 282
Query: 123 cttgagggatcctctggattgcagatatctgaagccctcaaactgcagatggaggtccaa 182
| || || || || ||| |||||||| ||||||||||||| |||||||||| || ||
Sbjct: 283 ttggacggctcgtcgggaatgcagataactgaagccctcaagttgcagatggaagttcag 342
Query: 183 aagcggctgcacgaacagttagaagtacaaaggcagctgcagttacgaattgaggctcag 242
|| || | ||||| || ||||||| ||||| |||||||| |||| || || || ||
Sbjct: 343 aaacgattacacgagcaactagaagtgcaaagacagctgcaactacggatagaagcacaa 402
Query: 243 ggaaagtacctccagaagatcatcgaagagca 274
||||||||| | ||||||| || ||||||||
Sbjct: 403 ggaaagtacttgaagaagataattgaagagca 434
>gb|AY084738.1| Arabidopsis thaliana clone 116381 mRNA, complete sequence
Length = 1832
Score = 56.0 bits (28), Expect = 7e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 15 catgtaaaaagtcacttgcagaaatacagactagcaaagtatat 58
||||||||||| ||||||||||| || |||||||| ||||||||
Sbjct: 1111 catgtaaaaagccacttgcagaagtatagactagccaagtatat 1154
>emb|BX823916.1|CNS0A6LP Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS92ZA08 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 941
Score = 56.0 bits (28), Expect = 7e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 15 catgtaaaaagtcacttgcagaaatacagactagcaaagtatat 58
||||||||||| ||||||||||| || |||||||| ||||||||
Sbjct: 311 catgtaaaaagccacttgcagaagtatagactagccaagtatat 354
>emb|BX822690.1|CNS0A70W Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB58ZE08 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1661
Score = 56.0 bits (28), Expect = 7e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 15 catgtaaaaagtcacttgcagaaatacagactagcaaagtatat 58
||||||||||| ||||||||||| || |||||||| ||||||||
Sbjct: 1030 catgtaaaaagccacttgcagaagtatagactagccaagtatat 1073
>emb|BX824456.1|CNS0A6UZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH4ZE07 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1562
Score = 56.0 bits (28), Expect = 7e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 15 catgtaaaaagtcacttgcagaaatacagactagcaaagtatat 58
||||||||||| ||||||||||| || |||||||| ||||||||
Sbjct: 943 catgtaaaaagccacttgcagaagtatagactagccaagtatat 986
>emb|BX823158.1|CNS0A7AE Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB94ZB08 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1689
Score = 56.0 bits (28), Expect = 7e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 15 catgtaaaaagtcacttgcagaaatacagactagcaaagtatat 58
||||||||||| ||||||||||| || |||||||| ||||||||
Sbjct: 1061 catgtaaaaagccacttgcagaagtatagactagccaagtatat 1104
>emb|BX824693.1|CNS0A7BL Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH65ZA07 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1559
Score = 56.0 bits (28), Expect = 7e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 15 catgtaaaaagtcacttgcagaaatacagactagcaaagtatat 58
||||||||||| ||||||||||| || |||||||| ||||||||
Sbjct: 950 catgtaaaaagccacttgcagaagtatagactagccaagtatat 993
>ref|NM_126168.2| Arabidopsis thaliana transcription factor AT2G01060 transcript
variant AT2G01060.1 mRNA, complete cds
Length = 1261
Score = 56.0 bits (28), Expect = 7e-006
Identities = 211/272 (77%)
Strand = Plus / Plus
Query: 3 ttaacaatataccatgtaaaaagtcacttgcagaaatacagactagcaaagtatattcct 62
||||| ||||| ||||| || |||||||| |||||||| |||| ||||||||| ||||
Sbjct: 365 ttaactatatatcatgtcaagagtcacttacagaaatatcgacttgcaaagtatcttcca 424
Query: 63 gatgcttcaactgatgggaacaagaccgataacaaagacccaggagatttgcttgccgga 122
||| | || |||| ||||| || || ||||| ||||| | |||||| |||| | ||
Sbjct: 425 gattcgtcttctgaagggaaaaaaactgataagaaagaatctggagatatgctctctggg 484
Query: 123 cttgagggatcctctggattgcagatatctgaagccctcaaactgcagatggaggtccaa 182
| || || || || ||| |||||||| ||||||||||||| |||||||||| || ||
Sbjct: 485 ttggacggctcgtcgggaatgcagataactgaagccctcaagttgcagatggaagttcag 544
Query: 183 aagcggctgcacgaacagttagaagtacaaaggcagctgcagttacgaattgaggctcag 242
|| || | ||||| || ||||||| ||||| |||||||| |||| || || || ||
Sbjct: 545 aaacgattacacgagcaactagaagtgcaaagacagctgcaactacggatagaagcacaa 604
Query: 243 ggaaagtacctccagaagatcatcgaagagca 274
||||||||| | ||||||| || ||||||||
Sbjct: 605 ggaaagtacttgaagaagataattgaagagca 636
>ref|NM_112141.2| Arabidopsis thaliana transcription factor AT3G13040 transcript
variant AT3G13040.1 mRNA, complete cds
Length = 1881
Score = 56.0 bits (28), Expect = 7e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 15 catgtaaaaagtcacttgcagaaatacagactagcaaagtatat 58
||||||||||| ||||||||||| || |||||||| ||||||||
Sbjct: 1111 catgtaaaaagccacttgcagaagtatagactagccaagtatat 1154
>ref|NM_201656.1| Arabidopsis thaliana transcription factor AT2G01060 transcript
variant AT2G01060.2 mRNA, complete cds
Length = 1415
Score = 56.0 bits (28), Expect = 7e-006
Identities = 211/272 (77%)
Strand = Plus / Plus
Query: 3 ttaacaatataccatgtaaaaagtcacttgcagaaatacagactagcaaagtatattcct 62
||||| ||||| ||||| || |||||||| |||||||| |||| ||||||||| ||||
Sbjct: 519 ttaactatatatcatgtcaagagtcacttacagaaatatcgacttgcaaagtatcttcca 578
Query: 63 gatgcttcaactgatgggaacaagaccgataacaaagacccaggagatttgcttgccgga 122
||| | || |||| ||||| || || ||||| ||||| | |||||| |||| | ||
Sbjct: 579 gattcgtcttctgaagggaaaaaaactgataagaaagaatctggagatatgctctctggg 638
Query: 123 cttgagggatcctctggattgcagatatctgaagccctcaaactgcagatggaggtccaa 182
| || || || || ||| |||||||| ||||||||||||| |||||||||| || ||
Sbjct: 639 ttggacggctcgtcgggaatgcagataactgaagccctcaagttgcagatggaagttcag 698
Query: 183 aagcggctgcacgaacagttagaagtacaaaggcagctgcagttacgaattgaggctcag 242
|| || | ||||| || ||||||| ||||| |||||||| |||| || || || ||
Sbjct: 699 aaacgattacacgagcaactagaagtgcaaagacagctgcaactacggatagaagcacaa 758
Query: 243 ggaaagtacctccagaagatcatcgaagagca 274
||||||||| | ||||||| || ||||||||
Sbjct: 759 ggaaagtacttgaagaagataattgaagagca 790
>ref|NM_202569.1| Arabidopsis thaliana unknown protein AT3G13040 transcript variant
AT3G13040.2 mRNA, complete cds
Length = 1735
Score = 56.0 bits (28), Expect = 7e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 15 catgtaaaaagtcacttgcagaaatacagactagcaaagtatat 58
||||||||||| ||||||||||| || |||||||| ||||||||
Sbjct: 965 catgtaaaaagccacttgcagaagtatagactagccaagtatat 1008
>gb|DR751170.1|DR751170 20-L021131-065-005-D03-SeLB MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 005-D03, mRNA sequence
Length = 867
Score = 50.1 bits (25), Expect = 4e-004
Identities = 136/173 (78%)
Strand = Plus / Minus
Query: 3 ttaacaatataccatgtaaaaagtcacttgcagaaatacagactagcaaagtatattcct 62
||||| ||||| ||||| || |||||||| |||||||| |||| ||||||||| ||||
Sbjct: 790 ttaactatatatcatgtcaagagtcacttacagaaatatcgacttgcaaagtatcttcca 731
Query: 63 gatgcttcaactgatgggaacaagaccgataacaaagacccaggagatttgcttgccgga 122
||| | || |||| ||||| || || ||||| ||||| | |||||| |||| | ||
Sbjct: 730 gattcgtcttctgaagggaaaaaaactgataagaaagaatctggagatatgctctctggg 671
Query: 123 cttgagggatcctctggattgcagatatctgaagccctcaaactgcagatgga 175
| || || || || ||| |||||||| ||||||||||||| ||||||||||
Sbjct: 670 ttggacggctcgtcgggaatgcagataactgaagccctcaagttgcagatgga 618
>emb|BX820061.1|CNS0A9EL Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS6ZC03 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1446
Score = 50.1 bits (25), Expect = 4e-004
Identities = 106/133 (79%)
Strand = Plus / Plus
Query: 142 tgcagatatctgaagccctcaaactgcagatggaggtccaaaagcggctgcacgaacagt 201
|||||||| ||||||||||||| |||||||||| || || || || | ||||| ||
Sbjct: 733 tgcagataactgaagccctcaagttgcagatggaagttcagaaacgattacacgagcaac 792
Query: 202 tagaagtacaaaggcagctgcagttacgaattgaggctcagggaaagtacctccagaaga 261
||||||| ||||| |||||||| |||| || || || || ||||||||| | ||||||
Sbjct: 793 tagaagtgcaaagacagctgcaactacggatagaagcacaaggaaagtacttgaagaaga 852
Query: 262 tcatcgaagagca 274
| || ||||||||
Sbjct: 853 taattgaagagca 865
>emb|BX820374.1|CNS0A9NR Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH27ZD02 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1355
Score = 50.1 bits (25), Expect = 4e-004
Identities = 106/133 (79%)
Strand = Plus / Plus
Query: 142 tgcagatatctgaagccctcaaactgcagatggaggtccaaaagcggctgcacgaacagt 201
|||||||| ||||||||||||| |||||||||| || || || || | ||||| ||
Sbjct: 775 tgcagataactgaagccctcaagttgcagatggaagttcagaaacgattacacgagcaac 834
Query: 202 tagaagtacaaaggcagctgcagttacgaattgaggctcagggaaagtacctccagaaga 261
||||||| ||||| |||||||| |||| || || || || ||||||||| | ||||||
Sbjct: 835 tagaagtgcaaagacagctgcaactacggatagaagcacaaggaaagtacttgaagaaga 894
Query: 262 tcatcgaagagca 274
| || ||||||||
Sbjct: 895 taattgaagagca 907
>emb|BX819609.1|CNS0AAEE Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB93ZG05 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 630
Score = 50.1 bits (25), Expect = 4e-004
Identities = 106/133 (79%)
Strand = Plus / Plus
Query: 142 tgcagatatctgaagccctcaaactgcagatggaggtccaaaagcggctgcacgaacagt 201
|||||||| ||||||||||||| |||||||||| || || || || | ||||| ||
Sbjct: 6 tgcagataactgaagccctcaagttgcagatggaagttcagaaacgattacacgagcaac 65
Query: 202 tagaagtacaaaggcagctgcagttacgaattgaggctcagggaaagtacctccagaaga 261
||||||| ||||| |||||||| |||| || || || || ||||||||| | ||||||
Sbjct: 66 tagaagtgcaaagacagctgcaactacggatagaagcacaaggaaagtacttgaagaaga 125
Query: 262 tcatcgaagagca 274
| || ||||||||
Sbjct: 126 taattgaagagca 138
>gb|CW839198.1|CW839198 GT7871.Ds3.07.23.2003.jx17.676 Arabidopsis thaliana Landsberg Ds
insertion lines Arabidopsis thaliana genomic clone
GT7871, DNA sequence
Length = 676
Score = 44.1 bits (22), Expect = 0.026
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 142 tgcagatatctgaagccctcaaactgcagatgga 175
|||||||| ||||||||||||| ||||||||||
Sbjct: 180 tgcagataactgaagccctcaagttgcagatgga 213
>gb|AY199709.1|AY199709 AY199709 Arabidopsis thaliana Landsberg DNA Arabidopsis thaliana
genomic clone ET6887.Ds5.07.09.99.b.585, DNA sequence
Length = 585
Score = 44.1 bits (22), Expect = 0.026
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 142 tgcagatatctgaagccctcaaactgcagatgga 175
|||||||| ||||||||||||| ||||||||||
Sbjct: 242 tgcagataactgaagccctcaagttgcagatgga 275
>gb|AY202904.1|AY202904 AY202904 Arabidopsis thaliana Landsberg erecta DNA Arabidopsis
thaliana genomic clone GT7871.Ds3.03.28.01.JU86.b.532,
DNA sequence
Length = 530
Score = 44.1 bits (22), Expect = 0.026
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 142 tgcagatatctgaagccctcaaactgcagatgga 175
|||||||| ||||||||||||| ||||||||||
Sbjct: 169 tgcagataactgaagccctcaagttgcagatgga 202
>gb|AI995135.1|AI995135 701502242 A. thaliana, Ohio State clone set Arabidopsis thaliana
cDNA clone 701502242, mRNA sequence
Length = 578
Score = 44.1 bits (22), Expect = 0.026
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 142 tgcagatatctgaagccctcaaactgcagatgga 175
|||||||| ||||||||||||| ||||||||||
Sbjct: 323 tgcagataactgaagccctcaagttgcagatgga 356
>gb|DR750662.1|DR750662 45-L021127-065-005-E06-SeLA MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 005-E06, mRNA sequence
Length = 329
Score = 44.1 bits (22), Expect = 0.026
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 142 tgcagatatctgaagccctcaaactgcagatgga 175
|||||||| ||||||||||||| ||||||||||
Sbjct: 280 tgcagataactgaagccctcaagttgcagatgga 313
>gb|DR751479.1|DR751479 04-L021131-065-005-D01-SeLB MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 005-D01, mRNA sequence
Length = 801
Score = 44.1 bits (22), Expect = 0.026
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 142 tgcagatatctgaagccctcaaactgcagatgga 175
|||||||| ||||||||||||| ||||||||||
Sbjct: 600 tgcagataactgaagccctcaagttgcagatgga 567
>gb|AC006837.16| Arabidopsis thaliana chromosome 2 BAC F23H14 genomic sequence, complete
sequence
Length = 91268
Score = 44.1 bits (22), Expect = 0.026
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 142 tgcagatatctgaagccctcaaactgcagatgga 175
|||||||| ||||||||||||| ||||||||||
Sbjct: 73137 tgcagataactgaagccctcaagttgcagatgga 73104
>emb|BX820595.1|CNS0A9I8 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH50ZF02 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1358
Score = 44.1 bits (22), Expect = 0.026
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 142 tgcagatatctgaagccctcaaactgcagatgga 175
|||||||| ||||||||||||| ||||||||||
Sbjct: 659 tgcagataactgaagccctcaagttgcagatgga 692
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 44.1 bits (22), Expect = 0.026
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 142 tgcagatatctgaagccctcaaactgcagatgga 175
|||||||| ||||||||||||| ||||||||||
Sbjct: 74137 tgcagataactgaagccctcaagttgcagatgga 74104
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 228,110
Number of Sequences: 1013581
Number of extensions: 228110
Number of successful extensions: 14993
Number of sequences better than 0.5: 40
Number of HSP's better than 0.5 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14891
Number of HSP's gapped (non-prelim): 102
length of query: 581
length of database: 908,940,872
effective HSP length: 20
effective length of query: 561
effective length of database: 888,669,252
effective search space: 498543450372
effective search space used: 498543450372
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)