BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4CL
(1986 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV563141.1|AV563141 AV563141 Arabidopsis thaliana green ... 60 2e-006
gb|AF106085.1|AF106085 Arabidopsis thaliana 4-coumarate:CoA... 60 2e-006
gb|AF106086.1|AF106086 Arabidopsis thaliana 4-coumarate:CoA... 60 2e-006
gb|AY099695.1| Arabidopsis thaliana putative 4-coumarate:Co... 60 2e-006
gb|BT000296.1| Arabidopsis thaliana putative 4-coumarate:Co... 60 2e-006
emb|AX505882.1| Sequence 577 from Patent WO0216655 60 2e-006
gb|AY376728.1| Arabidopsis thaliana 4-coumarate CoA ligase ... 60 2e-006
emb|BX822773.1|CNS0A78O Arabidopsis thaliana Full-length cD... 60 2e-006
dbj|AB023045.1| Arabidopsis thaliana genomic DNA, chromosom... 60 2e-006
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 60 2e-006
ref|NM_113019.2| Arabidopsis thaliana 4CL2; 4-coumarate-CoA... 60 2e-006
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 60 2e-006
gb|AI999552.1|AI999552 701556371 A. thaliana, Columbia Col-... 50 0.001
gb|AV787325.1|AV787325 AV787325 RAFL6 Arabidopsis thaliana ... 50 0.001
gb|AV802214.1|AV802214 AV802214 RAFL9 Arabidopsis thaliana ... 50 0.001
gb|AV533259.1|AV533259 AV533259 Arabidopsis thaliana flower... 50 0.001
gb|AV558658.1|AV558658 AV558658 Arabidopsis thaliana green ... 50 0.001
gb|BP638930.1|BP638930 BP638930 RAFL19 Arabidopsis thaliana... 50 0.001
gb|BP777131.1|BP777131 BP777131 RAFL7 Arabidopsis thaliana ... 50 0.001
gb|BP785335.1|BP785335 BP785335 RAFL7 Arabidopsis thaliana ... 50 0.001
gb|BP789073.1|BP789073 BP789073 RAFL7 Arabidopsis thaliana ... 50 0.001
gb|BP793536.1|BP793536 BP793536 RAFL7 Arabidopsis thaliana ... 50 0.001
gb|BP794586.1|BP794586 BP794586 RAFL7 Arabidopsis thaliana ... 50 0.001
gb|AF106088.1|AF106088 Arabidopsis thaliana 4-coumarate:CoA... 50 0.001
gb|AY058083.1| Arabidopsis thaliana At1g65060/F16G16_6 mRNA... 50 0.001
gb|AY090306.1| Arabidopsis thaliana At1g65060/F16G16_6 mRNA... 50 0.001
emb|AX412572.1| Sequence 336 from Patent WO0222675 50 0.001
emb|AX506095.1| Sequence 790 from Patent WO0216655 50 0.001
gb|AY376730.1| Arabidopsis thaliana 4-coumarate CoA ligase ... 50 0.001
emb|BX814606.1|CNS0ADL5 Arabidopsis thaliana Full-length cD... 50 0.001
ref|NM_105180.2| Arabidopsis thaliana 4CL3; 4-coumarate-CoA... 50 0.001
ref|NM_179513.1| Arabidopsis thaliana 4CL3; 4-coumarate-CoA... 50 0.001
emb|AL953654.1| Arabidopsis thaliana T-DNA flanking sequenc... 46 0.023
gb|CB185724.2|CB185724 EST00650 Arabidopsis avirulent Pseud... 46 0.023
gb|BP596151.1|BP596151 BP596151 RAFL15 Arabidopsis thaliana... 44 0.092
gb|CW843421.1|CW843421 ET13749.Ds5.10.08.2004.jx90.798 Arab... 42 0.36
gb|CW847911.1|CW847911 GT19652.Ds3.07.29.2004.jx82.811 Arab... 42 0.36
gb|U78297.1|ATU78297 Arabidopsis thaliana plasma membrane i... 42 0.36
gb|AF106087.1|AF106087 Arabidopsis thaliana 4-coumarate:CoA... 42 0.36
gb|AF003728.1|AF003728 Arabidopsis thaliana plasma membrane... 42 0.36
gb|AY091079.1| Arabidopsis thaliana putative 4-coumarate--C... 42 0.36
gb|AY122950.1| Arabidopsis thaliana putative 4-coumarate--C... 42 0.36
gb|AY088485.1| Arabidopsis thaliana clone 7108 mRNA, comple... 42 0.36
gb|AY250839.1| Arabidopsis thaliana 4-coumarate-CoA ligase-... 42 0.36
gb|AC009360.3|F16G16 Arabidopsis thaliana chromosome 1 BAC ... 42 0.36
emb|BX827081.1|CNS0A38R Arabidopsis thaliana Full-length cD... 42 0.36
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 42 0.36
ref|NM_116755.4| Arabidopsis thaliana 4-coumarate-CoA ligas... 42 0.36
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 42 0.36
gb|AQ968586.1|AQ968586 LERJD52TR LERG Arabidopsis thaliana ... 40 1.4
gb|BH612704.1|BH612704 SALK_033151 Arabidopsis thaliana TDN... 40 1.4
gb|CC887950.1|CC887950 SALK_151064.42.25.x Arabidopsis thal... 40 1.4
gb|CC888578.1|CC888578 SALK_152054.56.00.x Arabidopsis thal... 40 1.4
gb|CL512670.1|CL512670 SAIL_864_H02.v1 SAIL Collection Arab... 40 1.4
emb|AL942451.1| Arabidopsis thaliana T-DNA flanking sequenc... 40 1.4
gb|CW839963.1|CW839963 GT9170.Ds5.07.28.00.b.559 Arabidopsi... 40 1.4
gb|AY198705.1|AY198705 AY198705 Arabidopsis thaliana Landsb... 40 1.4
gb|AY198706.1|AY198706 AY198706 Arabidopsis thaliana Landsb... 40 1.4
gb|AY198707.1|AY198707 AY198707 Arabidopsis thaliana Landsb... 40 1.4
gb|H37298.1|H37298 15427 Lambda-PRL2 Arabidopsis thaliana c... 40 1.4
gb|BE529209.1|BE529209 M73P11STM Arabidopsis developing see... 40 1.4
gb|AV832080.1|AV832080 AV832080 RAFL11 Arabidopsis thaliana... 40 1.4
gb|AV548526.1|AV548526 AV548526 Arabidopsis thaliana roots ... 40 1.4
gb|AV554048.1|AV554048 AV554048 Arabidopsis thaliana roots ... 40 1.4
gb|CK117602.1|CK117602 215k08.p1 AtM1 Arabidopsis thaliana ... 40 1.4
gb|CK118405.1|CK118405 217b06.p1 AtM1 Arabidopsis thaliana ... 40 1.4
gb|BP796131.1|BP796131 BP796131 RAFL4 Arabidopsis thaliana ... 40 1.4
gb|BP807030.1|BP807030 BP807030 RAFL16 Arabidopsis thaliana... 40 1.4
gb|AF370479.1|AF370479 Arabidopsis thaliana putative D-ribu... 40 1.4
gb|AY086329.1| Arabidopsis thaliana clone 2398 mRNA, comple... 40 1.4
gb|AC010797.4|ATAC010797 Arabidopsis thaliana chromosome II... 40 1.4
emb|BX824869.1|CNS0A6U9 Arabidopsis thaliana Full-length cD... 40 1.4
ref|NM_111051.1| Arabidopsis thaliana ribulose-phosphate 3-... 40 1.4
ref|NM_180164.2| Arabidopsis thaliana ribulose-phosphate 3-... 40 1.4
gb|AQ968585.1|AQ968585 LERJD52TF LERG Arabidopsis thaliana ... 38 5.7
gb|CL479105.1|CL479105 SAIL_302_B02.v1 SAIL Collection Arab... 38 5.7
gb|CL482977.1|CL482977 SAIL_372_D04.v1 SAIL Collection Arab... 38 5.7
gb|CL510608.1|CL510608 SAIL_832_G11.v1 SAIL Collection Arab... 38 5.7
gb|Z47628.1|Z47628 ATTS4484 AC16H Arabidopsis thaliana cDNA... 38 5.7
gb|AA597980.1|AA597980 29229 Lambda-PRL2 Arabidopsis thalia... 38 5.7
gb|T88111.1|T88111 11807 Lambda-PRL2 Arabidopsis thaliana c... 38 5.7
gb|BE525630.1|BE525630 M63I03STM Arabidopsis developing see... 38 5.7
gb|AV784791.1|AV784791 AV784791 RAFL6 Arabidopsis thaliana ... 38 5.7
gb|AV830971.1|AV830971 AV830971 RAFL9 Arabidopsis thaliana ... 38 5.7
gb|CB264188.1|CB264188 81-E015022-035-004-A22-T7R MPIZ-ADIS... 38 5.7
gb|CF652094.1|CF652094 33-L020577-066-004-A09-SP6P MPIZ-ADI... 38 5.7
gb|AV440910.1|AV440910 AV440910 Arabidopsis thaliana above-... 38 5.7
gb|AV442163.1|AV442163 AV442163 Arabidopsis thaliana above-... 38 5.7
gb|AV531469.1|AV531469 AV531469 Arabidopsis thaliana flower... 38 5.7
gb|AV532748.1|AV532748 AV532748 Arabidopsis thaliana flower... 38 5.7
gb|AV537734.1|AV537734 AV537734 Arabidopsis thaliana roots ... 38 5.7
gb|AV538125.1|AV538125 AV538125 Arabidopsis thaliana roots ... 38 5.7
gb|AV538658.1|AV538658 AV538658 Arabidopsis thaliana roots ... 38 5.7
gb|AV539426.1|AV539426 AV539426 Arabidopsis thaliana roots ... 38 5.7
gb|AV539578.1|AV539578 AV539578 Arabidopsis thaliana roots ... 38 5.7
gb|AV540520.1|AV540520 AV540520 Arabidopsis thaliana roots ... 38 5.7
gb|AV543751.1|AV543751 AV543751 Arabidopsis thaliana roots ... 38 5.7
gb|AV544520.1|AV544520 AV544520 Arabidopsis thaliana roots ... 38 5.7
gb|AV544701.1|AV544701 AV544701 Arabidopsis thaliana roots ... 38 5.7
gb|AV550671.1|AV550671 AV550671 Arabidopsis thaliana roots ... 38 5.7
gb|AV550960.1|AV550960 AV550960 Arabidopsis thaliana roots ... 38 5.7
gb|AV551242.1|AV551242 AV551242 Arabidopsis thaliana roots ... 38 5.7
gb|AV551644.1|AV551644 AV551644 Arabidopsis thaliana roots ... 38 5.7
gb|AV551730.1|AV551730 AV551730 Arabidopsis thaliana roots ... 38 5.7
gb|AV553150.1|AV553150 AV553150 Arabidopsis thaliana roots ... 38 5.7
gb|AV554267.1|AV554267 AV554267 Arabidopsis thaliana roots ... 38 5.7
gb|AV563387.1|AV563387 AV563387 Arabidopsis thaliana green ... 38 5.7
gb|AV563946.1|AV563946 AV563946 Arabidopsis thaliana green ... 38 5.7
gb|AV567082.1|AV567082 AV567082 Arabidopsis thaliana green ... 38 5.7
gb|BP609431.1|BP609431 BP609431 RAFL16 Arabidopsis thaliana... 38 5.7
gb|BP617384.1|BP617384 BP617384 RAFL16 Arabidopsis thaliana... 38 5.7
gb|BP561084.2|BP561084 BP561084 RAFL6 Arabidopsis thaliana ... 38 5.7
gb|BP810066.1|BP810066 BP810066 RAFL16 Arabidopsis thaliana... 38 5.7
gb|BP833397.1|BP833397 BP833397 RAFL19 Arabidopsis thaliana... 38 5.7
gb|BP838856.1|BP838856 BP838856 RAFL19 Arabidopsis thaliana... 38 5.7
gb|AF412110.1|AF412110 Arabidopsis thaliana AT4g35100/M4E13... 38 5.7
gb|AY062803.1| Arabidopsis thaliana plasma membrane intrins... 38 5.7
gb|AY081580.1| Arabidopsis thaliana plasma membrane intrins... 38 5.7
emb|BX827124.1|CNS0A2UI Arabidopsis thaliana Full-length cD... 38 5.7
emb|BX827919.1|CNS0A2ZT Arabidopsis thaliana Full-length cD... 38 5.7
emb|BX826294.1|CNS0A39S Arabidopsis thaliana Full-length cD... 38 5.7
emb|BX826680.1|CNS0A37C Arabidopsis thaliana Full-length cD... 38 5.7
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 38 5.7
dbj|D85193.1| Arabidopsis thaliana mRNA, partial cds 38 5.7
dbj|AB018119.1| Arabidopsis thaliana genomic DNA, chromosom... 38 5.7
dbj|AP000603.1| Arabidopsis thaliana genomic DNA, chromosom... 38 5.7
emb|CR377843.1| Arabidopsis thaliana transposon insertion S... 38 5.7
emb|CR378288.1| Arabidopsis thaliana transposon insertion S... 38 5.7
emb|CR380101.1| Arabidopsis thaliana transposon insertion S... 38 5.7
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 38 5.7
emb|AL022023.1|ATM4E13 Arabidopsis thaliana DNA chromosome ... 38 5.7
emb|AL035522.1|ATT12J5 Arabidopsis thaliana DNA chromosome ... 38 5.7
emb|AL161586.2|ATCHRIV82 Arabidopsis thaliana DNA chromosom... 38 5.7
ref|NM_119676.2| Arabidopsis thaliana PIP3 (PLASMA MEMBRANE... 38 5.7
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 38 5.7
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 38 5.7
>gb|AV563141.1|AV563141 AV563141 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ182a09F 3', mRNA sequence
Length = 362
Score = 60.0 bits (30), Expect = 2e-006
Identities = 93/114 (81%)
Strand = Plus / Plus
Query: 1165 cagggttatgggatgacagaggcaggcccggtgctctcgatgtgcatggcgtttgccaag 1224
||||| |||||||||||||| ||||| |||||||| | |||| | | |||||| ||
Sbjct: 1 cagggctatgggatgacagaagcaggtccggtgctagcaatgtcgttagggtttgctaaa 60
Query: 1225 gagccgttaccggtgaagtccggtgcctgcggcacggtggtgaggaatgccgag 1278
|||||||| || |||||||| || || || || |||||||||||||| ||||||
Sbjct: 61 gagccgtttccagtgaagtcaggagcatgtggtacggtggtgaggaacgccgag 114
>gb|AF106085.1|AF106085 Arabidopsis thaliana 4-coumarate:CoA ligase 2 gene, complete cds
Length = 7906
Score = 60.0 bits (30), Expect = 2e-006
Identities = 93/114 (81%)
Strand = Plus / Plus
Query: 1165 cagggttatgggatgacagaggcaggcccggtgctctcgatgtgcatggcgtttgccaag 1224
||||| |||||||||||||| ||||| |||||||| | |||| | | |||||| ||
Sbjct: 3519 cagggctatgggatgacagaagcaggtccggtgctagcaatgtcgttagggtttgctaaa 3578
Query: 1225 gagccgttaccggtgaagtccggtgcctgcggcacggtggtgaggaatgccgag 1278
|||||||| || |||||||| || || || || |||||||||||||| ||||||
Sbjct: 3579 gagccgtttccagtgaagtcaggagcatgtggtacggtggtgaggaacgccgag 3632
Score = 40.1 bits (20), Expect = 1.4
Identities = 74/92 (80%)
Strand = Plus / Plus
Query: 742 tccggcacgacggggctgcccaagggggtgatgctgtcgcaccgtgggctggtaaccagc 801
|||||||||||||| || ||||| || |||||||| | ||| || || || || |||
Sbjct: 2160 tccggcacgacgggtctccccaaaggagtgatgctaacacacaaaggtctagtcacgagc 2219
Query: 802 gtggcgcagctcgtcgacggcgacaacccgaa 833
|||||||||| ||||||||||| || |||||
Sbjct: 2220 gtggcgcagcaagtcgacggcgagaatccgaa 2251
Score = 38.2 bits (19), Expect = 5.7
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 230 accacctcccgctccacgactac 252
|||||||||| ||||||||||||
Sbjct: 1651 accacctcccactccacgactac 1673
>gb|AF106086.1|AF106086 Arabidopsis thaliana 4-coumarate:CoA ligase 2 mRNA, complete cds
Length = 1944
Score = 60.0 bits (30), Expect = 2e-006
Identities = 93/114 (81%)
Strand = Plus / Plus
Query: 1165 cagggttatgggatgacagaggcaggcccggtgctctcgatgtgcatggcgtttgccaag 1224
||||| |||||||||||||| ||||| |||||||| | |||| | | |||||| ||
Sbjct: 1099 cagggctatgggatgacagaagcaggtccggtgctagcaatgtcgttagggtttgctaaa 1158
Query: 1225 gagccgttaccggtgaagtccggtgcctgcggcacggtggtgaggaatgccgag 1278
|||||||| || |||||||| || || || || |||||||||||||| ||||||
Sbjct: 1159 gagccgtttccagtgaagtcaggagcatgtggtacggtggtgaggaacgccgag 1212
Score = 40.1 bits (20), Expect = 1.4
Identities = 74/92 (80%)
Strand = Plus / Plus
Query: 742 tccggcacgacggggctgcccaagggggtgatgctgtcgcaccgtgggctggtaaccagc 801
|||||||||||||| || ||||| || |||||||| | ||| || || || || |||
Sbjct: 676 tccggcacgacgggtctccccaaaggagtgatgctaacacacaaaggtctagtcacgagc 735
Query: 802 gtggcgcagctcgtcgacggcgacaacccgaa 833
|||||||||| ||||||||||| || |||||
Sbjct: 736 gtggcgcagcaagtcgacggcgagaatccgaa 767
Score = 38.2 bits (19), Expect = 5.7
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 230 accacctcccgctccacgactac 252
|||||||||| ||||||||||||
Sbjct: 167 accacctcccactccacgactac 189
>gb|AY099695.1| Arabidopsis thaliana putative 4-coumarate:CoA ligase 2 (At3g21240)
mRNA, complete cds
Length = 1824
Score = 60.0 bits (30), Expect = 2e-006
Identities = 93/114 (81%)
Strand = Plus / Plus
Query: 1165 cagggttatgggatgacagaggcaggcccggtgctctcgatgtgcatggcgtttgccaag 1224
||||| |||||||||||||| ||||| |||||||| | |||| | | |||||| ||
Sbjct: 1070 cagggctatgggatgacagaagcaggtccggtgctagcaatgtcgttagggtttgctaaa 1129
Query: 1225 gagccgttaccggtgaagtccggtgcctgcggcacggtggtgaggaatgccgag 1278
|||||||| || |||||||| || || || || |||||||||||||| ||||||
Sbjct: 1130 gagccgtttccagtgaagtcaggagcatgtggtacggtggtgaggaacgccgag 1183
Score = 40.1 bits (20), Expect = 1.4
Identities = 74/92 (80%)
Strand = Plus / Plus
Query: 742 tccggcacgacggggctgcccaagggggtgatgctgtcgcaccgtgggctggtaaccagc 801
|||||||||||||| || ||||| || |||||||| | ||| || || || || |||
Sbjct: 647 tccggcacgacgggtctccccaaaggagtgatgctaacacacaaaggtctagtcacgagc 706
Query: 802 gtggcgcagctcgtcgacggcgacaacccgaa 833
|||||||||| ||||||||||| || |||||
Sbjct: 707 gtggcgcagcaagtcgacggcgagaatccgaa 738
Score = 38.2 bits (19), Expect = 5.7
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 230 accacctcccgctccacgactac 252
|||||||||| ||||||||||||
Sbjct: 138 accacctcccactccacgactac 160
>gb|BT000296.1| Arabidopsis thaliana putative 4-coumarate:CoA ligase 2 (At3g21240)
mRNA, complete cds
Length = 1744
Score = 60.0 bits (30), Expect = 2e-006
Identities = 93/114 (81%)
Strand = Plus / Plus
Query: 1165 cagggttatgggatgacagaggcaggcccggtgctctcgatgtgcatggcgtttgccaag 1224
||||| |||||||||||||| ||||| |||||||| | |||| | | |||||| ||
Sbjct: 1033 cagggctatgggatgacagaagcaggtccggtgctagcaatgtcgttagggtttgctaaa 1092
Query: 1225 gagccgttaccggtgaagtccggtgcctgcggcacggtggtgaggaatgccgag 1278
|||||||| || |||||||| || || || || |||||||||||||| ||||||
Sbjct: 1093 gagccgtttccagtgaagtcaggagcatgtggtacggtggtgaggaacgccgag 1146
Score = 40.1 bits (20), Expect = 1.4
Identities = 74/92 (80%)
Strand = Plus / Plus
Query: 742 tccggcacgacggggctgcccaagggggtgatgctgtcgcaccgtgggctggtaaccagc 801
|||||||||||||| || ||||| || |||||||| | ||| || || || || |||
Sbjct: 610 tccggcacgacgggtctccccaaaggagtgatgctaacacacaaaggtctagtcacgagc 669
Query: 802 gtggcgcagctcgtcgacggcgacaacccgaa 833
|||||||||| ||||||||||| || |||||
Sbjct: 670 gtggcgcagcaagtcgacggcgagaatccgaa 701
Score = 38.2 bits (19), Expect = 5.7
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 230 accacctcccgctccacgactac 252
|||||||||| ||||||||||||
Sbjct: 101 accacctcccactccacgactac 123
>emb|AX505882.1| Sequence 577 from Patent WO0216655
Length = 1671
Score = 60.0 bits (30), Expect = 2e-006
Identities = 93/114 (81%)
Strand = Plus / Plus
Query: 1165 cagggttatgggatgacagaggcaggcccggtgctctcgatgtgcatggcgtttgccaag 1224
||||| |||||||||||||| ||||| |||||||| | |||| | | |||||| ||
Sbjct: 1033 cagggctatgggatgacagaagcaggtccggtgctagcaatgtcgttagggtttgctaaa 1092
Query: 1225 gagccgttaccggtgaagtccggtgcctgcggcacggtggtgaggaatgccgag 1278
|||||||| || |||||||| || || || || |||||||||||||| ||||||
Sbjct: 1093 gagccgtttccagtgaagtcaggagcatgtggtacggtggtgaggaacgccgag 1146
Score = 40.1 bits (20), Expect = 1.4
Identities = 74/92 (80%)
Strand = Plus / Plus
Query: 742 tccggcacgacggggctgcccaagggggtgatgctgtcgcaccgtgggctggtaaccagc 801
|||||||||||||| || ||||| || |||||||| | ||| || || || || |||
Sbjct: 610 tccggcacgacgggtctccccaaaggagtgatgctaacacacaaaggtctagtcacgagc 669
Query: 802 gtggcgcagctcgtcgacggcgacaacccgaa 833
|||||||||| ||||||||||| || |||||
Sbjct: 670 gtggcgcagcaagtcgacggcgagaatccgaa 701
Score = 38.2 bits (19), Expect = 5.7
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 230 accacctcccgctccacgactac 252
|||||||||| ||||||||||||
Sbjct: 101 accacctcccactccacgactac 123
>gb|AY376728.1| Arabidopsis thaliana 4-coumarate CoA ligase isoform 2 mRNA, complete
cds
Length = 1671
Score = 60.0 bits (30), Expect = 2e-006
Identities = 93/114 (81%)
Strand = Plus / Plus
Query: 1165 cagggttatgggatgacagaggcaggcccggtgctctcgatgtgcatggcgtttgccaag 1224
||||| |||||||||||||| ||||| |||||||| | |||| | | |||||| ||
Sbjct: 1033 cagggctatgggatgacagaagcaggtccggtgctagcaatgtcgttagggtttgctaaa 1092
Query: 1225 gagccgttaccggtgaagtccggtgcctgcggcacggtggtgaggaatgccgag 1278
|||||||| || |||||||| || || || || |||||||||||||| ||||||
Sbjct: 1093 gagccgtttccagtgaagtcaggagcatgtggtacggtggtgaggaacgccgag 1146
Score = 40.1 bits (20), Expect = 1.4
Identities = 74/92 (80%)
Strand = Plus / Plus
Query: 742 tccggcacgacggggctgcccaagggggtgatgctgtcgcaccgtgggctggtaaccagc 801
|||||||||||||| || ||||| || |||||||| | ||| || || || || |||
Sbjct: 610 tccggcacgacgggtctccccaaaggagtgatgctaacacacaaaggtctagtcacgagc 669
Query: 802 gtggcgcagctcgtcgacggcgacaacccgaa 833
|||||||||| ||||||||||| || |||||
Sbjct: 670 gtggcgcagcaagtcgacggcgagaatccgaa 701
Score = 38.2 bits (19), Expect = 5.7
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 230 accacctcccgctccacgactac 252
|||||||||| ||||||||||||
Sbjct: 101 accacctcccactccacgactac 123
>emb|BX822773.1|CNS0A78O Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB63ZD09 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1922
Score = 60.0 bits (30), Expect = 2e-006
Identities = 93/114 (81%)
Strand = Plus / Plus
Query: 1165 cagggttatgggatgacagaggcaggcccggtgctctcgatgtgcatggcgtttgccaag 1224
||||| |||||||||||||| ||||| |||||||| | |||| | | |||||| ||
Sbjct: 1094 cagggctatgggatgacagaagcaggtccggtgctagcaatgtcgttagggtttgctaaa 1153
Query: 1225 gagccgttaccggtgaagtccggtgcctgcggcacggtggtgaggaatgccgag 1278
|||||||| || |||||||| || || || || |||||||||||||| ||||||
Sbjct: 1154 gagccgtttccagtgaagtcaggagcatgtggtacggtggtgaggaacgccgag 1207
Score = 38.2 bits (19), Expect = 5.7
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 742 tccggcacgacggggctgcccaagggggtgatgct 776
|||||||||||||| || ||||| || ||||||||
Sbjct: 671 tccggcacgacgggtctccccaaaggagtgatgct 705
Score = 38.2 bits (19), Expect = 5.7
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 230 accacctcccgctccacgactac 252
|||||||||| ||||||||||||
Sbjct: 162 accacctcccactccacgactac 184
>dbj|AB023045.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MXL8
Length = 85599
Score = 60.0 bits (30), Expect = 2e-006
Identities = 93/114 (81%)
Strand = Plus / Minus
Query: 1165 cagggttatgggatgacagaggcaggcccggtgctctcgatgtgcatggcgtttgccaag 1224
||||| |||||||||||||| ||||| |||||||| | |||| | | |||||| ||
Sbjct: 37154 cagggctatgggatgacagaagcaggtccggtgctagcaatgtcgttagggtttgctaaa 37095
Query: 1225 gagccgttaccggtgaagtccggtgcctgcggcacggtggtgaggaatgccgag 1278
|||||||| || |||||||| || || || || |||||||||||||| ||||||
Sbjct: 37094 gagccgtttccagtgaagtcaggagcatgtggtacggtggtgaggaacgccgag 37041
Score = 40.1 bits (20), Expect = 1.4
Identities = 74/92 (80%)
Strand = Plus / Minus
Query: 742 tccggcacgacggggctgcccaagggggtgatgctgtcgcaccgtgggctggtaaccagc 801
|||||||||||||| || ||||| || |||||||| | ||| || || || || |||
Sbjct: 38513 tccggcacgacgggtctccccaaaggagtgatgctaacacacaaaggtctagtcacgagc 38454
Query: 802 gtggcgcagctcgtcgacggcgacaacccgaa 833
|||||||||| ||||||||||| || |||||
Sbjct: 38453 gtggcgcagcaagtcgacggcgagaatccgaa 38422
Score = 38.2 bits (19), Expect = 5.7
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 230 accacctcccgctccacgactac 252
|||||||||| ||||||||||||
Sbjct: 39022 accacctcccactccacgactac 39000
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 60.0 bits (30), Expect = 2e-006
Identities = 93/114 (81%)
Strand = Plus / Minus
Query: 1165 cagggttatgggatgacagaggcaggcccggtgctctcgatgtgcatggcgtttgccaag 1224
||||| |||||||||||||| ||||| |||||||| | |||| | | |||||| ||
Sbjct: 7408164 cagggctatgggatgacagaagcaggtccggtgctagcaatgtcgttagggtttgctaaa 7408105
Query: 1225 gagccgttaccggtgaagtccggtgcctgcggcacggtggtgaggaatgccgag 1278
|||||||| || |||||||| || || || || |||||||||||||| ||||||
Sbjct: 7408104 gagccgtttccagtgaagtcaggagcatgtggtacggtggtgaggaacgccgag 7408051
Score = 40.1 bits (20), Expect = 1.4
Identities = 74/92 (80%)
Strand = Plus / Minus
Query: 742 tccggcacgacggggctgcccaagggggtgatgctgtcgcaccgtgggctggtaaccagc 801
|||||||||||||| || ||||| || |||||||| | ||| || || || || |||
Sbjct: 7409523 tccggcacgacgggtctccccaaaggagtgatgctaacacacaaaggtctagtcacgagc 7409464
Query: 802 gtggcgcagctcgtcgacggcgacaacccgaa 833
|||||||||| ||||||||||| || |||||
Sbjct: 7409463 gtggcgcagcaagtcgacggcgagaatccgaa 7409432
Score = 40.1 bits (20), Expect = 1.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 148 cggaagaagatggtgtcgcc 167
||||||||||||||||||||
Sbjct: 302006 cggaagaagatggtgtcgcc 301987
Score = 38.2 bits (19), Expect = 5.7
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 230 accacctcccgctccacgactac 252
|||||||||| ||||||||||||
Sbjct: 7410032 accacctcccactccacgactac 7410010
Score = 38.2 bits (19), Expect = 5.7
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 537 cgccaccgtcgtcatcaccgagc 559
||||||||||| |||||||||||
Sbjct: 4393294 cgccaccgtcgccatcaccgagc 4393272
>ref|NM_113019.2| Arabidopsis thaliana 4CL2; 4-coumarate-CoA ligase AT3G21240 (4CL2)
mRNA, complete cds
Length = 1957
Score = 60.0 bits (30), Expect = 2e-006
Identities = 93/114 (81%)
Strand = Plus / Plus
Query: 1165 cagggttatgggatgacagaggcaggcccggtgctctcgatgtgcatggcgtttgccaag 1224
||||| |||||||||||||| ||||| |||||||| | |||| | | |||||| ||
Sbjct: 1098 cagggctatgggatgacagaagcaggtccggtgctagcaatgtcgttagggtttgctaaa 1157
Query: 1225 gagccgttaccggtgaagtccggtgcctgcggcacggtggtgaggaatgccgag 1278
|||||||| || |||||||| || || || || |||||||||||||| ||||||
Sbjct: 1158 gagccgtttccagtgaagtcaggagcatgtggtacggtggtgaggaacgccgag 1211
Score = 40.1 bits (20), Expect = 1.4
Identities = 74/92 (80%)
Strand = Plus / Plus
Query: 742 tccggcacgacggggctgcccaagggggtgatgctgtcgcaccgtgggctggtaaccagc 801
|||||||||||||| || ||||| || |||||||| | ||| || || || || |||
Sbjct: 675 tccggcacgacgggtctccccaaaggagtgatgctaacacacaaaggtctagtcacgagc 734
Query: 802 gtggcgcagctcgtcgacggcgacaacccgaa 833
|||||||||| ||||||||||| || |||||
Sbjct: 735 gtggcgcagcaagtcgacggcgagaatccgaa 766
Score = 38.2 bits (19), Expect = 5.7
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 230 accacctcccgctccacgactac 252
|||||||||| ||||||||||||
Sbjct: 166 accacctcccactccacgactac 188
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 60.0 bits (30), Expect = 2e-006
Identities = 93/114 (81%)
Strand = Plus / Minus
Query: 1165 cagggttatgggatgacagaggcaggcccggtgctctcgatgtgcatggcgtttgccaag 1224
||||| |||||||||||||| ||||| |||||||| | |||| | | |||||| ||
Sbjct: 7455352 cagggctatgggatgacagaagcaggtccggtgctagcaatgtcgttagggtttgctaaa 7455293
Query: 1225 gagccgttaccggtgaagtccggtgcctgcggcacggtggtgaggaatgccgag 1278
|||||||| || |||||||| || || || || |||||||||||||| ||||||
Sbjct: 7455292 gagccgtttccagtgaagtcaggagcatgtggtacggtggtgaggaacgccgag 7455239
Score = 40.1 bits (20), Expect = 1.4
Identities = 74/92 (80%)
Strand = Plus / Minus
Query: 742 tccggcacgacggggctgcccaagggggtgatgctgtcgcaccgtgggctggtaaccagc 801
|||||||||||||| || ||||| || |||||||| | ||| || || || || |||
Sbjct: 7456711 tccggcacgacgggtctccccaaaggagtgatgctaacacacaaaggtctagtcacgagc 7456652
Query: 802 gtggcgcagctcgtcgacggcgacaacccgaa 833
|||||||||| ||||||||||| || |||||
Sbjct: 7456651 gtggcgcagcaagtcgacggcgagaatccgaa 7456620
Score = 40.1 bits (20), Expect = 1.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 148 cggaagaagatggtgtcgcc 167
||||||||||||||||||||
Sbjct: 302003 cggaagaagatggtgtcgcc 301984
Score = 38.2 bits (19), Expect = 5.7
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 230 accacctcccgctccacgactac 252
|||||||||| ||||||||||||
Sbjct: 7457220 accacctcccactccacgactac 7457198
Score = 38.2 bits (19), Expect = 5.7
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 537 cgccaccgtcgtcatcaccgagc 559
||||||||||| |||||||||||
Sbjct: 4399995 cgccaccgtcgccatcaccgagc 4399973
>gb|AI999552.1|AI999552 701556371 A. thaliana, Columbia Col-0, rosette-3 Arabidopsis thaliana
cDNA clone 701556371, mRNA sequence
Length = 626
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 1678 aaacaggtggtgttctacaagaggctgcacaagatcttctt 1718
||||||||||||||||| ||||| |||||||| |||||||
Sbjct: 204 aaacaggtggtgttctataagagattgcacaaggtcttctt 164
>gb|AV787325.1|AV787325 AV787325 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-75-B04 3', mRNA
sequence
Length = 425
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 1678 aaacaggtggtgttctacaagaggctgcacaagatcttctt 1718
||||||||||||||||| ||||| |||||||| |||||||
Sbjct: 260 aaacaggtggtgttctataagagattgcacaaggtcttctt 220
>gb|AV802214.1|AV802214 AV802214 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-31-C01 3', mRNA
sequence
Length = 408
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 1678 aaacaggtggtgttctacaagaggctgcacaagatcttctt 1718
||||||||||||||||| ||||| |||||||| |||||||
Sbjct: 166 aaacaggtggtgttctataagagattgcacaaggtcttctt 126
>gb|AV533259.1|AV533259 AV533259 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB058f07F 3', mRNA sequence
Length = 358
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 1678 aaacaggtggtgttctacaagaggctgcacaagatcttctt 1718
||||||||||||||||| ||||| |||||||| |||||||
Sbjct: 256 aaacaggtggtgttctataagagattgcacaaggtcttctt 216
>gb|AV558658.1|AV558658 AV558658 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ103f10F 3', mRNA sequence
Length = 416
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 1678 aaacaggtggtgttctacaagaggctgcacaagatcttctt 1718
||||||||||||||||| ||||| |||||||| |||||||
Sbjct: 224 aaacaggtggtgttctataagagattgcacaaggtcttctt 184
>gb|BP638930.1|BP638930 BP638930 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-45-H03 3',
mRNA sequence
Length = 386
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 1678 aaacaggtggtgttctacaagaggctgcacaagatcttctt 1718
||||||||||||||||| ||||| |||||||| |||||||
Sbjct: 270 aaacaggtggtgttctataagagattgcacaaggtcttctt 230
>gb|BP777131.1|BP777131 BP777131 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-19-A10 3', mRNA
sequence
Length = 395
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 1678 aaacaggtggtgttctacaagaggctgcacaagatcttctt 1718
||||||||||||||||| ||||| |||||||| |||||||
Sbjct: 273 aaacaggtggtgttctataagagattgcacaaggtcttctt 233
>gb|BP785335.1|BP785335 BP785335 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-94-G20 3', mRNA
sequence
Length = 411
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 1678 aaacaggtggtgttctacaagaggctgcacaagatcttctt 1718
||||||||||||||||| ||||| |||||||| |||||||
Sbjct: 273 aaacaggtggtgttctataagagattgcacaaggtcttctt 233
>gb|BP789073.1|BP789073 BP789073 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-36-M05 3', mRNA
sequence
Length = 397
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 1678 aaacaggtggtgttctacaagaggctgcacaagatcttctt 1718
||||||||||||||||| ||||| |||||||| |||||||
Sbjct: 286 aaacaggtggtgttctataagagattgcacaaggtcttctt 246
>gb|BP793536.1|BP793536 BP793536 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-56-K19 3', mRNA
sequence
Length = 409
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 1678 aaacaggtggtgttctacaagaggctgcacaagatcttctt 1718
||||||||||||||||| ||||| |||||||| |||||||
Sbjct: 225 aaacaggtggtgttctataagagattgcacaaggtcttctt 185
>gb|BP794586.1|BP794586 BP794586 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-61-B16 3', mRNA
sequence
Length = 410
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 1678 aaacaggtggtgttctacaagaggctgcacaagatcttctt 1718
||||||||||||||||| ||||| |||||||| |||||||
Sbjct: 293 aaacaggtggtgttctataagagattgcacaaggtcttctt 253
>gb|AF106088.1|AF106088 Arabidopsis thaliana 4-coumarate:CoA ligase 3 mRNA, complete cds
Length = 1873
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 1678 aaacaggtggtgttctacaagaggctgcacaagatcttctt 1718
||||||||||||||||| ||||| |||||||| |||||||
Sbjct: 1614 aaacaggtggtgttctataagagattgcacaaggtcttctt 1654
Score = 40.1 bits (20), Expect = 1.4
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 207 gcttccggacatcgccatcccggaccacctcccgctccac 246
|||||||||||| | |||||| |||||||||| ||||||
Sbjct: 152 gcttccggacattgacatccctaaccacctccctctccac 191
>gb|AY058083.1| Arabidopsis thaliana At1g65060/F16G16_6 mRNA, complete cds
Length = 892
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 1678 aaacaggtggtgttctacaagaggctgcacaagatcttctt 1718
||||||||||||||||| ||||| |||||||| |||||||
Sbjct: 727 aaacaggtggtgttctataagagattgcacaaggtcttctt 767
>gb|AY090306.1| Arabidopsis thaliana At1g65060/F16G16_6 mRNA, complete cds
Length = 612
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 1678 aaacaggtggtgttctacaagaggctgcacaagatcttctt 1718
||||||||||||||||| ||||| |||||||| |||||||
Sbjct: 502 aaacaggtggtgttctataagagattgcacaaggtcttctt 542
>emb|AX412572.1| Sequence 336 from Patent WO0222675
Length = 1686
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 1678 aaacaggtggtgttctacaagaggctgcacaagatcttctt 1718
||||||||||||||||| ||||| |||||||| |||||||
Sbjct: 1576 aaacaggtggtgttctataagagattgcacaaggtcttctt 1616
Score = 40.1 bits (20), Expect = 1.4
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 207 gcttccggacatcgccatcccggaccacctcccgctccac 246
|||||||||||| | |||||| |||||||||| ||||||
Sbjct: 114 gcttccggacattgacatccctaaccacctccctctccac 153
>emb|AX506095.1| Sequence 790 from Patent WO0216655
Length = 1686
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 1678 aaacaggtggtgttctacaagaggctgcacaagatcttctt 1718
||||||||||||||||| ||||| |||||||| |||||||
Sbjct: 1576 aaacaggtggtgttctataagagattgcacaaggtcttctt 1616
Score = 40.1 bits (20), Expect = 1.4
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 207 gcttccggacatcgccatcccggaccacctcccgctccac 246
|||||||||||| | |||||| |||||||||| ||||||
Sbjct: 114 gcttccggacattgacatccctaaccacctccctctccac 153
>gb|AY376730.1| Arabidopsis thaliana 4-coumarate CoA ligase isoform 3 mRNA, complete
cds
Length = 1686
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 1678 aaacaggtggtgttctacaagaggctgcacaagatcttctt 1718
||||||||||||||||| ||||| |||||||| |||||||
Sbjct: 1576 aaacaggtggtgttctataagagattgcacaaggtcttctt 1616
Score = 40.1 bits (20), Expect = 1.4
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 207 gcttccggacatcgccatcccggaccacctcccgctccac 246
|||||||||||| | |||||| |||||||||| ||||||
Sbjct: 114 gcttccggacattgacatccctaaccacctccctctccac 153
>emb|BX814606.1|CNS0ADL5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB84ZC05 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1727
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 1678 aaacaggtggtgttctacaagaggctgcacaagatcttctt 1718
||||||||||||||||| ||||| |||||||| |||||||
Sbjct: 1581 aaacaggtggtgttctataagagattgcacaaggtcttctt 1621
Score = 40.1 bits (20), Expect = 1.4
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 207 gcttccggacatcgccatcccggaccacctcccgctccac 246
|||||||||||| | |||||| |||||||||| ||||||
Sbjct: 120 gcttccggacattgacatccctaaccacctccctctccac 159
>ref|NM_105180.2| Arabidopsis thaliana 4CL3; 4-coumarate-CoA ligase AT1G65060 (4CL3)
transcript variant AT1G65060.1 mRNA, complete cds
Length = 1889
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 1678 aaacaggtggtgttctacaagaggctgcacaagatcttctt 1718
||||||||||||||||| ||||| |||||||| |||||||
Sbjct: 1621 aaacaggtggtgttctataagagattgcacaaggtcttctt 1661
Score = 40.1 bits (20), Expect = 1.4
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 207 gcttccggacatcgccatcccggaccacctcccgctccac 246
|||||||||||| | |||||| |||||||||| ||||||
Sbjct: 159 gcttccggacattgacatccctaaccacctccctctccac 198
>ref|NM_179513.1| Arabidopsis thaliana 4CL3; 4-coumarate-CoA ligase AT1G65060 (4CL3)
transcript variant AT1G65060.2 mRNA, complete cds
Length = 2056
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 1678 aaacaggtggtgttctacaagaggctgcacaagatcttctt 1718
||||||||||||||||| ||||| |||||||| |||||||
Sbjct: 1788 aaacaggtggtgttctataagagattgcacaaggtcttctt 1828
Score = 40.1 bits (20), Expect = 1.4
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 207 gcttccggacatcgccatcccggaccacctcccgctccac 246
|||||||||||| | |||||| |||||||||| ||||||
Sbjct: 159 gcttccggacattgacatccctaaccacctccctctccac 198
>emb|AL953654.1| Arabidopsis thaliana T-DNA flanking sequence GK-353A11-016362,
genomic survey sequence
Length = 115
Score = 46.1 bits (23), Expect = 0.023
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1165 cagggttatgggatgacagaggcaggcccggtgct 1199
||||| |||||||||||||| ||||| ||||||||
Sbjct: 80 cagggctatgggatgacagaagcaggtccggtgct 114
>gb|CB185724.2|CB185724 EST00650 Arabidopsis avirulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone RPM5-D2 similar
to putative 4-coumarate:CoA ligase 2, mRNA sequence
Length = 453
Score = 46.1 bits (23), Expect = 0.023
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 1165 cagggttatgggatgacagaggcaggcccggtgct 1199
||||| |||||||||||||| ||||| ||||||||
Sbjct: 74 cagggctatgggatgacagaagcaggtccggtgct 40
>gb|BP596151.1|BP596151 BP596151 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-32-O12 3',
mRNA sequence
Length = 452
Score = 44.1 bits (22), Expect = 0.092
Identities = 38/42 (90%), Gaps = 1/42 (2%)
Strand = Plus / Minus
Query: 1678 aaacaggtggtgttctacaagag-gctgcacaagatcttctt 1718
||||||||||||||||| ||||| | |||||||| |||||||
Sbjct: 265 aaacaggtggtgttctataagagagttgcacaaggtcttctt 224
>gb|CW843421.1|CW843421 ET13749.Ds5.10.08.2004.jx90.798 Arabidopsis thaliana Landsberg Ds
insertion lines Arabidopsis thaliana genomic clone
ET13749, DNA sequence
Length = 798
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1900 agaaaacggtgtaaacaagaa 1920
|||||||||||||||||||||
Sbjct: 724 agaaaacggtgtaaacaagaa 704
>gb|CW847911.1|CW847911 GT19652.Ds3.07.29.2004.jx82.811 Arabidopsis thaliana Landsberg Ds
insertion lines Arabidopsis thaliana genomic clone
GT19652, DNA sequence
Length = 811
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1900 agaaaacggtgtaaacaagaa 1920
|||||||||||||||||||||
Sbjct: 464 agaaaacggtgtaaacaagaa 484
>gb|U78297.1|ATU78297 Arabidopsis thaliana plasma membrane intrinsic protein PIP3 mRNA,
complete cds
Length = 1046
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1900 agaaaacggtgtaaacaagaa 1920
|||||||||||||||||||||
Sbjct: 585 agaaaacggtgtaaacaagaa 565
>gb|AF106087.1|AF106087 Arabidopsis thaliana 4-coumarate:CoA ligase 3 gene, complete cds
Length = 5666
Score = 42.1 bits (21), Expect = 0.36
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 1682 aggtggtgttctacaagaggctgcacaagatcttctt 1718
||||||||||||| ||||| |||||||| |||||||
Sbjct: 4596 aggtggtgttctataagagattgcacaaggtcttctt 4632
Score = 40.1 bits (20), Expect = 1.4
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 207 gcttccggacatcgccatcccggaccacctcccgctccac 246
|||||||||||| | |||||| |||||||||| ||||||
Sbjct: 744 gcttccggacattgacatccctaaccacctccctctccac 783
>gb|AF003728.1|AF003728 Arabidopsis thaliana plasma membrane intrinsic protein (SIMIP) mRNA,
complete cds
Length = 1030
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1900 agaaaacggtgtaaacaagaa 1920
|||||||||||||||||||||
Sbjct: 566 agaaaacggtgtaaacaagaa 546
>gb|AY091079.1| Arabidopsis thaliana putative 4-coumarate--CoA ligase (At4g05160)
mRNA, complete cds
Length = 1788
Score = 42.1 bits (21), Expect = 0.36
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1358 tgatgaaagggtacctcaacaaccc 1382
||||||||||||||||||| |||||
Sbjct: 1238 tgatgaaagggtacctcaataaccc 1262
>gb|AY122950.1| Arabidopsis thaliana putative 4-coumarate--CoA ligase (At4g05160)
mRNA, complete cds
Length = 1666
Score = 42.1 bits (21), Expect = 0.36
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1358 tgatgaaagggtacctcaacaaccc 1382
||||||||||||||||||| |||||
Sbjct: 1196 tgatgaaagggtacctcaataaccc 1220
>gb|AY088485.1| Arabidopsis thaliana clone 7108 mRNA, complete sequence
Length = 1033
Score = 42.1 bits (21), Expect = 0.36
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1900 agaaaacggtgtaaacaagaa 1920
|||||||||||||||||||||
Sbjct: 587 agaaaacggtgtaaacaagaa 567
>gb|AY250839.1| Arabidopsis thaliana 4-coumarate-CoA ligase-like protein (At4g05160)
mRNA, complete cds
Length = 1635
Score = 42.1 bits (21), Expect = 0.36
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1358 tgatgaaagggtacctcaacaaccc 1382
||||||||||||||||||| |||||
Sbjct: 1196 tgatgaaagggtacctcaataaccc 1220
>gb|AC009360.3|F16G16 Arabidopsis thaliana chromosome 1 BAC F16G16 sequence, complete
sequence
Length = 28334
Score = 42.1 bits (21), Expect = 0.36
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 1682 aggtggtgttctacaagaggctgcacaagatcttctt 1718
||||||||||||| ||||| |||||||| |||||||
Sbjct: 12777 aggtggtgttctataagagattgcacaaggtcttctt 12741
Score = 40.1 bits (20), Expect = 1.4
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 207 gcttccggacatcgccatcccggaccacctcccgctccac 246
|||||||||||| | |||||| |||||||||| ||||||
Sbjct: 16630 gcttccggacattgacatccctaaccacctccctctccac 16591
>emb|BX827081.1|CNS0A38R Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB93ZB08 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1821
Score = 42.1 bits (21), Expect = 0.36
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1358 tgatgaaagggtacctcaacaaccc 1382
||||||||||||||||||| |||||
Sbjct: 1220 tgatgaaagggtacctcaataaccc 1244
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 42.1 bits (21), Expect = 0.36
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 1682 aggtggtgttctacaagaggctgcacaagatcttctt 1718
||||||||||||| ||||| |||||||| |||||||
Sbjct: 8408806 aggtggtgttctataagagattgcacaaggtcttctt 8408770
Score = 40.1 bits (20), Expect = 1.4
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 207 gcttccggacatcgccatcccggaccacctcccgctccac 246
|||||||||||| | |||||| |||||||||| ||||||
Sbjct: 8412659 gcttccggacattgacatccctaaccacctccctctccac 8412620
>ref|NM_116755.4| Arabidopsis thaliana 4-coumarate-CoA ligase/ fatty-acyl-CoA synthase
AT4G05160 mRNA, complete cds
Length = 1861
Score = 42.1 bits (21), Expect = 0.36
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1358 tgatgaaagggtacctcaacaaccc 1382
||||||||||||||||||| |||||
Sbjct: 1262 tgatgaaagggtacctcaataaccc 1286
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 42.1 bits (21), Expect = 0.36
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 1682 aggtggtgttctacaagaggctgcacaagatcttctt 1718
||||||||||||| ||||| |||||||| |||||||
Sbjct: 24171154 aggtggtgttctataagagattgcacaaggtcttctt 24171118
Score = 40.1 bits (20), Expect = 1.4
Identities = 35/40 (87%)
Strand = Plus / Minus
Query: 207 gcttccggacatcgccatcccggaccacctcccgctccac 246
|||||||||||| | |||||| |||||||||| ||||||
Sbjct: 24175007 gcttccggacattgacatccctaaccacctccctctccac 24174968
>gb|AQ968586.1|AQ968586 LERJD52TR LERG Arabidopsis thaliana genomic clone LERJD52, DNA
sequence
Length = 583
Score = 40.1 bits (20), Expect = 1.4
Identities = 74/92 (80%)
Strand = Plus / Minus
Query: 742 tccggcacgacggggctgcccaagggggtgatgctgtcgcaccgtgggctggtaaccagc 801
|||||||||||||| || ||||| || |||||||| | ||| || || || || |||
Sbjct: 470 tccggcacgacgggtctccccaaaggagtgatgctaacacacaaaggtctagtcacgagc 411
Query: 802 gtggcgcagctcgtcgacggcgacaacccgaa 833
|||||||||| ||||||||||| || |||||
Sbjct: 410 gtggcgcagcaagtcgacggcgagaatccgaa 379
>gb|BH612704.1|BH612704 SALK_033151 Arabidopsis thaliana TDNA insertion lines Arabidopsis
thaliana genomic clone SALK_033151, DNA sequence
Length = 457
Score = 40.1 bits (20), Expect = 1.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 cggaagaagatggtgtcgcc 167
||||||||||||||||||||
Sbjct: 198 cggaagaagatggtgtcgcc 217
>gb|CC887950.1|CC887950 SALK_151064.42.25.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_151064.42.25.x,
DNA sequence
Length = 347
Score = 40.1 bits (20), Expect = 1.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 cggaagaagatggtgtcgcc 167
||||||||||||||||||||
Sbjct: 161 cggaagaagatggtgtcgcc 180
>gb|CC888578.1|CC888578 SALK_152054.56.00.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_152054.56.00.x,
DNA sequence
Length = 438
Score = 40.1 bits (20), Expect = 1.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 cggaagaagatggtgtcgcc 167
||||||||||||||||||||
Sbjct: 292 cggaagaagatggtgtcgcc 311
>gb|CL512670.1|CL512670 SAIL_864_H02.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_864_H02.v1, DNA sequence
Length = 1012
Score = 40.1 bits (20), Expect = 1.4
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 452 cgtgctcccgcctcggcgccgccg 475
||||| ||||||||||||||||||
Sbjct: 688 cgtgcccccgcctcggcgccgccg 711
>emb|AL942451.1| Arabidopsis thaliana T-DNA flanking sequence GK-266B01-014991,
genomic survey sequence
Length = 199
Score = 40.1 bits (20), Expect = 1.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 cggaagaagatggtgtcgcc 167
||||||||||||||||||||
Sbjct: 127 cggaagaagatggtgtcgcc 146
>gb|CW839963.1|CW839963 GT9170.Ds5.07.28.00.b.559 Arabidopsis thaliana Landsberg Ds
insertion lines Arabidopsis thaliana genomic clone
GT9170, DNA sequence
Length = 559
Score = 40.1 bits (20), Expect = 1.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 cggaagaagatggtgtcgcc 167
||||||||||||||||||||
Sbjct: 284 cggaagaagatggtgtcgcc 303
>gb|AY198705.1|AY198705 AY198705 Arabidopsis thaliana Landsberg DNA Arabidopsis thaliana
genomic clone ET2671.Ds5.05.14.98.b.530, DNA sequence
Length = 530
Score = 40.1 bits (20), Expect = 1.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 cggaagaagatggtgtcgcc 167
||||||||||||||||||||
Sbjct: 68 cggaagaagatggtgtcgcc 87
>gb|AY198706.1|AY198706 AY198706 Arabidopsis thaliana Landsberg DNA Arabidopsis thaliana
genomic clone ET2671.Ds5.06.21.99.b.499, DNA sequence
Length = 499
Score = 40.1 bits (20), Expect = 1.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 cggaagaagatggtgtcgcc 167
||||||||||||||||||||
Sbjct: 43 cggaagaagatggtgtcgcc 62
>gb|AY198707.1|AY198707 AY198707 Arabidopsis thaliana Landsberg DNA Arabidopsis thaliana
genomic clone ET2671.Ds5.08.07.97.b.500, DNA sequence
Length = 500
Score = 40.1 bits (20), Expect = 1.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 cggaagaagatggtgtcgcc 167
||||||||||||||||||||
Sbjct: 43 cggaagaagatggtgtcgcc 62
>gb|H37298.1|H37298 15427 Lambda-PRL2 Arabidopsis thaliana cDNA clone 179J16T7, mRNA
sequence
Length = 351
Score = 40.1 bits (20), Expect = 1.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1900 agaaaacggtgtaaacaaga 1919
||||||||||||||||||||
Sbjct: 269 agaaaacggtgtaaacaaga 250
>gb|BE529209.1|BE529209 M73P11STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone 600038448R1 5', mRNA sequence
Length = 268
Score = 40.1 bits (20), Expect = 1.4
Identities = 74/92 (80%)
Strand = Plus / Plus
Query: 742 tccggcacgacggggctgcccaagggggtgatgctgtcgcaccgtgggctggtaaccagc 801
|||||||||||||| || ||||| || |||||||| | ||| || || || || |||
Sbjct: 42 tccggcacgacgggtctccccaaaggagtgatgctaacacacaaaggtctagtcacgagc 101
Query: 802 gtggcgcagctcgtcgacggcgacaacccgaa 833
|||||||||| ||||||||||| || |||||
Sbjct: 102 gtggcgcagcaagtcgacggcgagaatccgaa 133
>gb|AV832080.1|AV832080 AV832080 RAFL11 Arabidopsis thaliana cDNA clone RAFL11-02-F16 5',
mRNA sequence
Length = 627
Score = 40.1 bits (20), Expect = 1.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 cggaagaagatggtgtcgcc 167
||||||||||||||||||||
Sbjct: 43 cggaagaagatggtgtcgcc 62
>gb|AV548526.1|AV548526 AV548526 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZL56b04F 3', mRNA sequence
Length = 442
Score = 40.1 bits (20), Expect = 1.4
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 207 gcttccggacatcgccatcccggaccacctcccgctccac 246
|||||||||||| | |||||| |||||||||| ||||||
Sbjct: 159 gcttccggacattgacatccctaaccacctccctctccac 198
>gb|AV554048.1|AV554048 AV554048 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ79e04R 5', mRNA sequence
Length = 483
Score = 40.1 bits (20), Expect = 1.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 cggaagaagatggtgtcgcc 167
||||||||||||||||||||
Sbjct: 18 cggaagaagatggtgtcgcc 37
>gb|CK117602.1|CK117602 215k08.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011K08215
5-PRIME, mRNA sequence
Length = 610
Score = 40.1 bits (20), Expect = 1.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 cggaagaagatggtgtcgcc 167
||||||||||||||||||||
Sbjct: 19 cggaagaagatggtgtcgcc 38
>gb|CK118405.1|CK118405 217b06.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011B06217
5-PRIME, mRNA sequence
Length = 653
Score = 40.1 bits (20), Expect = 1.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 cggaagaagatggtgtcgcc 167
||||||||||||||||||||
Sbjct: 61 cggaagaagatggtgtcgcc 80
>gb|BP796131.1|BP796131 BP796131 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-09-F03 5',
mRNA sequence
Length = 674
Score = 40.1 bits (20), Expect = 1.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 cggaagaagatggtgtcgcc 167
||||||||||||||||||||
Sbjct: 43 cggaagaagatggtgtcgcc 62
>gb|BP807030.1|BP807030 BP807030 RAFL16 Arabidopsis thaliana cDNA clone RAFL24-12-B10 5',
mRNA sequence
Length = 385
Score = 40.1 bits (20), Expect = 1.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 cggaagaagatggtgtcgcc 167
||||||||||||||||||||
Sbjct: 44 cggaagaagatggtgtcgcc 63
>gb|AF370479.1|AF370479 Arabidopsis thaliana putative D-ribulose-5-phosphate 3-epimerase
(F28J7.18) mRNA, complete cds
Length = 922
Score = 40.1 bits (20), Expect = 1.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 cggaagaagatggtgtcgcc 167
||||||||||||||||||||
Sbjct: 42 cggaagaagatggtgtcgcc 61
>gb|AY086329.1| Arabidopsis thaliana clone 2398 mRNA, complete sequence
Length = 1034
Score = 40.1 bits (20), Expect = 1.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 cggaagaagatggtgtcgcc 167
||||||||||||||||||||
Sbjct: 23 cggaagaagatggtgtcgcc 42
>gb|AC010797.4|ATAC010797 Arabidopsis thaliana chromosome III BAC F28J7 genomic sequence,
complete sequence
Length = 89154
Score = 40.1 bits (20), Expect = 1.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 148 cggaagaagatggtgtcgcc 167
||||||||||||||||||||
Sbjct: 46693 cggaagaagatggtgtcgcc 46674
>emb|BX824869.1|CNS0A6U9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH79ZA12 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 987
Score = 40.1 bits (20), Expect = 1.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 cggaagaagatggtgtcgcc 167
||||||||||||||||||||
Sbjct: 6 cggaagaagatggtgtcgcc 25
>ref|NM_111051.1| Arabidopsis thaliana ribulose-phosphate 3-epimerase AT3G01850
transcript variant AT3G01850.1 mRNA, complete cds
Length = 1053
Score = 40.1 bits (20), Expect = 1.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 cggaagaagatggtgtcgcc 167
||||||||||||||||||||
Sbjct: 42 cggaagaagatggtgtcgcc 61
>ref|NM_180164.2| Arabidopsis thaliana ribulose-phosphate 3-epimerase AT3G01850
transcript variant AT3G01850.2 mRNA, complete cds
Length = 1023
Score = 40.1 bits (20), Expect = 1.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 148 cggaagaagatggtgtcgcc 167
||||||||||||||||||||
Sbjct: 42 cggaagaagatggtgtcgcc 61
>gb|AQ968585.1|AQ968585 LERJD52TF LERG Arabidopsis thaliana genomic clone LERJD52, DNA
sequence
Length = 152
Score = 38.2 bits (19), Expect = 5.7
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 799 agcgtggcgcagctcgtcgacggcgacaacccgaa 833
||||||||||||| ||||||||||| || |||||
Sbjct: 38 agcgtggcgcagcaagtcgacggcgagaatccgaa 72
>gb|CL479105.1|CL479105 SAIL_302_B02.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_302_B02.v1, DNA sequence
Length = 905
Score = 38.2 bits (19), Expect = 5.7
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 587 tcgccggcgtcgccgtcgtcgcc 609
|||||||||||| ||||||||||
Sbjct: 189 tcgccggcgtcgtcgtcgtcgcc 211
>gb|CL482977.1|CL482977 SAIL_372_D04.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_372_D04.v1, DNA sequence
Length = 880
Score = 38.2 bits (19), Expect = 5.7
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 922 cgcgccggcgcggcgctcgtgat 944
|||||||||||| ||||||||||
Sbjct: 788 cgcgccggcgcgccgctcgtgat 766
>gb|CL510608.1|CL510608 SAIL_832_G11.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_832_G11.v1, DNA sequence
Length = 820
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 474 cgccaccacggccaacccg 492
|||||||||||||||||||
Sbjct: 784 cgccaccacggccaacccg 802
>gb|Z47628.1|Z47628 ATTS4484 AC16H Arabidopsis thaliana cDNA clone TAI347 5', mRNA
sequence
Length = 376
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1900 agaaaacggtgtaaacaag 1918
|||||||||||||||||||
Sbjct: 106 agaaaacggtgtaaacaag 88
>gb|AA597980.1|AA597980 29229 Lambda-PRL2 Arabidopsis thaliana cDNA clone 249A2T7, mRNA
sequence
Length = 284
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1900 agaaaacggtgtaaacaag 1918
|||||||||||||||||||
Sbjct: 94 agaaaacggtgtaaacaag 76
>gb|T88111.1|T88111 11807 Lambda-PRL2 Arabidopsis thaliana cDNA clone 156F12T7, mRNA
sequence
Length = 404
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1902 aaaacggtgtaaacaagaa 1920
|||||||||||||||||||
Sbjct: 289 aaaacggtgtaaacaagaa 271
>gb|BE525630.1|BE525630 M63I03STM Arabidopsis developing seed Arabidopsis thaliana cDNA clone
600034113R1 5', mRNA sequence
Length = 264
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1900 agaaaacggtgtaaacaag 1918
|||||||||||||||||||
Sbjct: 19 agaaaacggtgtaaacaag 1
>gb|AV784791.1|AV784791 AV784791 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-08-F07 3', mRNA
sequence
Length = 681
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1900 agaaaacggtgtaaacaag 1918
|||||||||||||||||||
Sbjct: 452 agaaaacggtgtaaacaag 470
>gb|AV830971.1|AV830971 AV830971 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-81-L19 5',
mRNA sequence
Length = 590
Score = 38.2 bits (19), Expect = 5.7
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 230 accacctcccgctccacgactac 252
|||||||||| ||||||||||||
Sbjct: 138 accacctcccactccacgactac 160
>gb|CB264188.1|CB264188 81-E015022-035-004-A22-T7R MPIZ-ADIS-035 Arabidopsis thaliana cDNA
clone MPIZp2000A224Q 5-PRIME, mRNA sequence
Length = 587
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1900 agaaaacggtgtaaacaag 1918
|||||||||||||||||||
Sbjct: 572 agaaaacggtgtaaacaag 554
>gb|CF652094.1|CF652094 33-L020577-066-004-A09-SP6P MPIZ-ADIS-066 Arabidopsis thaliana cDNA
clone MPIZp2001A094Q 5-PRIME, mRNA sequence
Length = 685
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1900 agaaaacggtgtaaacaag 1918
|||||||||||||||||||
Sbjct: 155 agaaaacggtgtaaacaag 137
>gb|AV440910.1|AV440910 AV440910 Arabidopsis thaliana above-ground organ two to six-week old
Arabidopsis thaliana cDNA clone APZ14a08_f 3', mRNA
sequence
Length = 644
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1900 agaaaacggtgtaaacaag 1918
|||||||||||||||||||
Sbjct: 394 agaaaacggtgtaaacaag 412
>gb|AV442163.1|AV442163 AV442163 Arabidopsis thaliana above-ground organ two to six-week old
Arabidopsis thaliana cDNA clone APZ14a08_r 5', mRNA
sequence
Length = 574
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1900 agaaaacggtgtaaacaag 1918
|||||||||||||||||||
Sbjct: 547 agaaaacggtgtaaacaag 529
>gb|AV531469.1|AV531469 AV531469 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB023e11F 3', mRNA sequence
Length = 465
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1900 agaaaacggtgtaaacaag 1918
|||||||||||||||||||
Sbjct: 428 agaaaacggtgtaaacaag 446
>gb|AV532748.1|AV532748 AV532748 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB049d02F 3', mRNA sequence
Length = 514
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1900 agaaaacggtgtaaacaag 1918
|||||||||||||||||||
Sbjct: 481 agaaaacggtgtaaacaag 499
>gb|AV537734.1|AV537734 AV537734 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ102c05F 3', mRNA sequence
Length = 599
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1900 agaaaacggtgtaaacaag 1918
|||||||||||||||||||
Sbjct: 448 agaaaacggtgtaaacaag 466
>gb|AV538125.1|AV538125 AV538125 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ110b11F 3', mRNA sequence
Length = 548
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1900 agaaaacggtgtaaacaag 1918
|||||||||||||||||||
Sbjct: 452 agaaaacggtgtaaacaag 470
>gb|AV538658.1|AV538658 AV538658 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ119g09F 3', mRNA sequence
Length = 610
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1900 agaaaacggtgtaaacaag 1918
|||||||||||||||||||
Sbjct: 440 agaaaacggtgtaaacaag 458
>gb|AV539426.1|AV539426 AV539426 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ131f06F 3', mRNA sequence
Length = 592
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1900 agaaaacggtgtaaacaag 1918
|||||||||||||||||||
Sbjct: 446 agaaaacggtgtaaacaag 464
>gb|AV539578.1|AV539578 AV539578 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ135f04F 3', mRNA sequence
Length = 348
Score = 38.2 bits (19), Expect = 5.7
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 230 accacctcccgctccacgactac 252
|||||||||| ||||||||||||
Sbjct: 22 accacctcccactccacgactac 44
>gb|AV540520.1|AV540520 AV540520 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ151c04F 3', mRNA sequence
Length = 611
Score = 38.2 bits (19), Expect = 5.7
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 230 accacctcccgctccacgactac 252
|||||||||| ||||||||||||
Sbjct: 138 accacctcccactccacgactac 160
>gb|AV543751.1|AV543751 AV543751 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ22d01F 3', mRNA sequence
Length = 541
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1900 agaaaacggtgtaaacaag 1918
|||||||||||||||||||
Sbjct: 368 agaaaacggtgtaaacaag 386
>gb|AV544520.1|AV544520 AV544520 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ46e09F 3', mRNA sequence
Length = 463
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1900 agaaaacggtgtaaacaag 1918
|||||||||||||||||||
Sbjct: 421 agaaaacggtgtaaacaag 439
>gb|AV544701.1|AV544701 AV544701 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ55b07F 3', mRNA sequence
Length = 467
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1900 agaaaacggtgtaaacaag 1918
|||||||||||||||||||
Sbjct: 405 agaaaacggtgtaaacaag 423
>gb|AV550671.1|AV550671 AV550671 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ115g04R 5', mRNA sequence
Length = 571
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1900 agaaaacggtgtaaacaag 1918
|||||||||||||||||||
Sbjct: 535 agaaaacggtgtaaacaag 517
>gb|AV550960.1|AV550960 AV550960 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ119g09R 5', mRNA sequence
Length = 569
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1900 agaaaacggtgtaaacaag 1918
|||||||||||||||||||
Sbjct: 564 agaaaacggtgtaaacaag 546
>gb|AV551242.1|AV551242 AV551242 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ123b09R 5', mRNA sequence
Length = 508
Score = 38.2 bits (19), Expect = 5.7
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 230 accacctcccgctccacgactac 252
|||||||||| ||||||||||||
Sbjct: 80 accacctcccactccacgactac 102
>gb|AV551644.1|AV551644 AV551644 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ129e05R 5', mRNA sequence
Length = 564
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1900 agaaaacggtgtaaacaag 1918
|||||||||||||||||||
Sbjct: 546 agaaaacggtgtaaacaag 528
>gb|AV551730.1|AV551730 AV551730 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ130a02R 5', mRNA sequence
Length = 536
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1900 agaaaacggtgtaaacaag 1918
|||||||||||||||||||
Sbjct: 452 agaaaacggtgtaaacaag 470
>gb|AV553150.1|AV553150 AV553150 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ55b07R 5', mRNA sequence
Length = 564
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1900 agaaaacggtgtaaacaag 1918
|||||||||||||||||||
Sbjct: 550 agaaaacggtgtaaacaag 532
>gb|AV554267.1|AV554267 AV554267 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ85h10R 5', mRNA sequence
Length = 509
Score = 38.2 bits (19), Expect = 5.7
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 230 accacctcccgctccacgactac 252
|||||||||| ||||||||||||
Sbjct: 149 accacctcccactccacgactac 171
>gb|AV563387.1|AV563387 AV563387 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ186e03F 3', mRNA sequence
Length = 515
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1900 agaaaacggtgtaaacaag 1918
|||||||||||||||||||
Sbjct: 472 agaaaacggtgtaaacaag 490
>gb|AV563946.1|AV563946 AV563946 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ196c12F 3', mRNA sequence
Length = 478
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1900 agaaaacggtgtaaacaag 1918
|||||||||||||||||||
Sbjct: 450 agaaaacggtgtaaacaag 468
>gb|AV567082.1|AV567082 AV567082 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQL06d10F 3', mRNA sequence
Length = 578
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1900 agaaaacggtgtaaacaag 1918
|||||||||||||||||||
Sbjct: 445 agaaaacggtgtaaacaag 463
>gb|BP609431.1|BP609431 BP609431 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-82-B18 3',
mRNA sequence
Length = 489
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1900 agaaaacggtgtaaacaag 1918
|||||||||||||||||||
Sbjct: 446 agaaaacggtgtaaacaag 464
>gb|BP617384.1|BP617384 BP617384 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-23-L11 3',
mRNA sequence
Length = 460
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1900 agaaaacggtgtaaacaag 1918
|||||||||||||||||||
Sbjct: 440 agaaaacggtgtaaacaag 458
>gb|BP561084.2|BP561084 BP561084 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-08-G12 5', mRNA
sequence
Length = 654
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1900 agaaaacggtgtaaacaag 1918
|||||||||||||||||||
Sbjct: 594 agaaaacggtgtaaacaag 576
>gb|BP810066.1|BP810066 BP810066 RAFL16 Arabidopsis thaliana cDNA clone RAFL24-24-I10 5',
mRNA sequence
Length = 391
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1900 agaaaacggtgtaaacaag 1918
|||||||||||||||||||
Sbjct: 88 agaaaacggtgtaaacaag 70
>gb|BP833397.1|BP833397 BP833397 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-96-A20 5',
mRNA sequence
Length = 371
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1900 agaaaacggtgtaaacaag 1918
|||||||||||||||||||
Sbjct: 75 agaaaacggtgtaaacaag 57
>gb|BP838856.1|BP838856 BP838856 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-25-D15 5',
mRNA sequence
Length = 414
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1900 agaaaacggtgtaaacaag 1918
|||||||||||||||||||
Sbjct: 356 agaaaacggtgtaaacaag 338
>gb|AF412110.1|AF412110 Arabidopsis thaliana AT4g35100/M4E13_150 mRNA, complete cds
Length = 1026
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1900 agaaaacggtgtaaacaag 1918
|||||||||||||||||||
Sbjct: 587 agaaaacggtgtaaacaag 569
>gb|AY062803.1| Arabidopsis thaliana plasma membrane intrinsic protein (SIMIP)
(At4g35100; M4E13.150) mRNA, complete cds
Length = 1036
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1900 agaaaacggtgtaaacaag 1918
|||||||||||||||||||
Sbjct: 585 agaaaacggtgtaaacaag 567
>gb|AY081580.1| Arabidopsis thaliana plasma membrane intrinsic protein (SIMIP)
(At4g35100) mRNA, complete cds
Length = 946
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1900 agaaaacggtgtaaacaag 1918
|||||||||||||||||||
Sbjct: 538 agaaaacggtgtaaacaag 520
>emb|BX827124.1|CNS0A2UI Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS11ZH09 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 985
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1900 agaaaacggtgtaaacaag 1918
|||||||||||||||||||
Sbjct: 570 agaaaacggtgtaaacaag 552
>emb|BX827919.1|CNS0A2ZT Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH35ZA10 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1019
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1900 agaaaacggtgtaaacaag 1918
|||||||||||||||||||
Sbjct: 575 agaaaacggtgtaaacaag 557
>emb|BX826294.1|CNS0A39S Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB11ZA04 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 999
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1900 agaaaacggtgtaaacaag 1918
|||||||||||||||||||
Sbjct: 576 agaaaacggtgtaaacaag 558
>emb|BX826680.1|CNS0A37C Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB53ZH03 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1036
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1900 agaaaacggtgtaaacaag 1918
|||||||||||||||||||
Sbjct: 578 agaaaacggtgtaaacaag 560
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1900 agaaaacggtgtaaacaag 1918
|||||||||||||||||||
Sbjct: 12622092 agaaaacggtgtaaacaag 12622074
>dbj|D85193.1| Arabidopsis thaliana mRNA, partial cds
Length = 748
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1900 agaaaacggtgtaaacaag 1918
|||||||||||||||||||
Sbjct: 277 agaaaacggtgtaaacaag 259
>dbj|AB018119.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSN2
Length = 62927
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1886 aaagatatatatacagaaa 1904
|||||||||||||||||||
Sbjct: 37400 aaagatatatatacagaaa 37418
>dbj|AP000603.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MRP15
Length = 83287
Score = 38.2 bits (19), Expect = 5.7
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 537 cgccaccgtcgtcatcaccgagc 559
||||||||||| |||||||||||
Sbjct: 53918 cgccaccgtcgccatcaccgagc 53896
>emb|CR377843.1| Arabidopsis thaliana transposon insertion STS GT_5.23365, sequence
tagged site
Length = 250
Score = 38.2 bits (19), Expect = 5.7
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 537 cgccaccgtcgtcatcaccgagc 559
||||||||||| |||||||||||
Sbjct: 190 cgccaccgtcgccatcaccgagc 212
>emb|CR378288.1| Arabidopsis thaliana transposon insertion STS GT_5.24263, sequence
tagged site
Length = 224
Score = 38.2 bits (19), Expect = 5.7
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 537 cgccaccgtcgtcatcaccgagc 559
||||||||||| |||||||||||
Sbjct: 189 cgccaccgtcgccatcaccgagc 211
>emb|CR380101.1| Arabidopsis thaliana transposon insertion STS GT_3.4797, sequence
tagged site
Length = 240
Score = 38.2 bits (19), Expect = 5.7
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 537 cgccaccgtcgtcatcaccgagc 559
||||||||||| |||||||||||
Sbjct: 190 cgccaccgtcgccatcaccgagc 212
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1886 aaagatatatatacagaaa 1904
|||||||||||||||||||
Sbjct: 23530068 aaagatatatatacagaaa 23530086
>emb|AL022023.1|ATM4E13 Arabidopsis thaliana DNA chromosome 4, BAC clone M4E13 (ESSAII project)
Length = 80346
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1900 agaaaacggtgtaaacaag 1918
|||||||||||||||||||
Sbjct: 65114 agaaaacggtgtaaacaag 65096
>emb|AL035522.1|ATT12J5 Arabidopsis thaliana DNA chromosome 4, BAC clone T12J5 (ESSAII
project)
Length = 84499
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1900 agaaaacggtgtaaacaag 1918
|||||||||||||||||||
Sbjct: 34159 agaaaacggtgtaaacaag 34141
>emb|AL161586.2|ATCHRIV82 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 82
Length = 195165
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1900 agaaaacggtgtaaacaag 1918
|||||||||||||||||||
Sbjct: 164081 agaaaacggtgtaaacaag 164063
>ref|NM_119676.2| Arabidopsis thaliana PIP3 (PLASMA MEMBRANE INTRINSIC PROTEIN 3);
water channel AT4G35100 (PIP3) mRNA, complete cds
Length = 1182
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1900 agaaaacggtgtaaacaag 1918
|||||||||||||||||||
Sbjct: 587 agaaaacggtgtaaacaag 569
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1900 agaaaacggtgtaaacaag 1918
|||||||||||||||||||
Sbjct: 16709306 agaaaacggtgtaaacaag 16709288
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 38.2 bits (19), Expect = 5.7
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1886 aaagatatatatacagaaa 1904
|||||||||||||||||||
Sbjct: 26649221 aaagatatatatacagaaa 26649239
Database: At_nucl_with_EST.fasta
Posted date: May 2, 2006 2:53 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 604,503
Number of Sequences: 1013581
Number of extensions: 604503
Number of successful extensions: 44754
Number of sequences better than 10.0: 137
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42719
Number of HSP's gapped (non-prelim): 2035
length of query: 1986
length of database: 908,940,872
effective HSP length: 21
effective length of query: 1965
effective length of database: 887,655,671
effective search space: 1744243393515
effective search space used: 1744243393515
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)