BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 4580194.2.1
         (542 letters)

Database: At_nucl_with_EST.fasta 
           1,013,581 sequences; 908,940,872 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AC009526.4|AC009526  Arabidopsis thaliana chromosome I BA...    44   0.025
gb|AE005173.1|  Arabidopsis thaliana chromosome 1, bottom ar...    44   0.025
ref|NC_003070.5|  Arabidopsis thaliana chromosome 1, complet...    44   0.025

>gb|AC009526.4|AC009526 Arabidopsis thaliana chromosome I BAC F2J6 genomic sequence, complete
             sequence
          Length = 108061

 Score = 44.1 bits (22), Expect = 0.025
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 157   agagaagatgaagcggaagacg 178
             ||||||||||||||||||||||
Sbjct: 61603 agagaagatgaagcggaagacg 61582



>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
          Length = 14668883

 Score = 44.1 bits (22), Expect = 0.025
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 157    agagaagatgaagcggaagacg 178
              ||||||||||||||||||||||
Sbjct: 989521 agagaagatgaagcggaagacg 989500



>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
          Length = 30432563

 Score = 44.1 bits (22), Expect = 0.025
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 157      agagaagatgaagcggaagacg 178
                ||||||||||||||||||||||
Sbjct: 16505631 agagaagatgaagcggaagacg 16505610



  Database: At_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:09 PM
  Number of letters in database: 908,940,872
  Number of sequences in database:  1,013,581
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 202,187
Number of Sequences: 1013581
Number of extensions: 202187
Number of successful extensions: 13852
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13757
Number of HSP's gapped (non-prelim): 95
length of query: 542
length of database: 908,940,872
effective HSP length: 20
effective length of query: 522
effective length of database: 888,669,252
effective search space: 463885349544
effective search space used: 463885349544
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)