BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4573985.2.1
(373 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB256384.1|CB256384 80-E011583-027-006-P20-T7R MPIZ-ADIS... 58 1e-006
gb|CF652570.1|CF652570 63-L020578-066-004-M16-SP6P MPIZ-ADI... 58 1e-006
gb|AF074092.1|AF074092 Arabidopsis thaliana cellulase (DEC)... 58 1e-006
gb|AF074375.1|AF074375 Arabidopsis thaliana cellulase (DEC)... 58 1e-006
gb|AF073875.1|AF073875 Arabidopsis thaliana endo-1,4-beta-D... 58 1e-006
gb|U37702.1|ATU37702 Arabidopsis thaliana cellulase (OR16pe... 58 1e-006
emb|A83259.1| Sequence 1 from Patent WO9850568 58 1e-006
gb|AY037218.1| Arabidopsis thaliana AT5g49720/K2I5_8 mRNA, ... 58 1e-006
dbj|E64634.1| Method for modifying plant cell wall component 58 1e-006
dbj|E64635.1| Method for modifying plant cell wall component 58 1e-006
gb|BT002221.1| Arabidopsis thaliana At5g49720/K2I5_8 mRNA, ... 58 1e-006
gb|AY086165.1| Arabidopsis thaliana clone 21922 mRNA, compl... 58 1e-006
dbj|AB025613.1| Arabidopsis thaliana genomic DNA, chromosom... 58 1e-006
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 58 1e-006
ref|NM_124350.2| Arabidopsis thaliana KOR1 (KORRIGAN); hydr... 58 1e-006
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 58 1e-006
emb|BX661189.1| Arabidopsis thaliana T-DNA flanking sequenc... 46 0.004
emb|BX662798.1| Arabidopsis thaliana T-DNA flanking sequenc... 46 0.004
emb|BX663297.1| Arabidopsis thaliana T-DNA flanking sequenc... 46 0.004
gb|CB185570.1|CB185570 EST000103 Arabidopsis Salicylic Acid... 46 0.004
gb|CB185577.1|CB185577 EST000110 Arabidopsis Salicylic Acid... 46 0.004
gb|CB185485.1|CB185485 EST00018 Arabidopsis Salicylic Acid ... 46 0.004
gb|CB185533.1|CB185533 EST00066 Arabidopsis Salicylic Acid ... 46 0.004
gb|CB185851.1|CB185851 EST01042 Arabidopsis virulent Pseudo... 46 0.004
emb|BX662728.1| Arabidopsis thaliana T-DNA flanking sequenc... 44 0.017
emb|BX662824.1| Arabidopsis thaliana T-DNA flanking sequenc... 44 0.017
gb|BE845139.1|BE845139 AD07D05T7 AD A. thaliana (Col-0 gl1)... 44 0.017
gb|BE662730.1|BE662730 EST00251 Arabidopsis Acute Ozone Rev... 44 0.017
gb|BE662731.1|BE662731 EST00252 Arabidopsis Acute Ozone Rev... 44 0.017
gb|BE662737.1|BE662737 EST00258 Arabidopsis Acute Ozone Rev... 44 0.017
gb|CB185793.2|CB185793 EST00720 Arabidopsis avirulent Pseud... 44 0.017
gb|CB185474.1|CB185474 EST00007 Arabidopsis Salicylic Acid ... 44 0.017
gb|CB185495.1|CB185495 EST00028 Arabidopsis Salicylic Acid ... 44 0.017
gb|CB185508.1|CB185508 EST00041 Arabidopsis Salicylic Acid ... 44 0.017
gb|CB185880.1|CB185880 EST01071 Arabidopsis virulent Pseudo... 44 0.017
gb|CB185942.1|CB185942 EST01133 Arabidopsis virulent Pseudo... 44 0.017
gb|CB185943.1|CB185943 EST01134 Arabidopsis virulent Pseudo... 44 0.017
gb|CB239324.1|CB239324 EST01145 Arabidopsis virulent Pseudo... 44 0.017
gb|CB074223.1|CB074223 EST01000 Virulent Peronospora parasi... 44 0.017
gb|CB074411.1|CB074411 EST00927 Virulent Peronospora parasi... 44 0.017
gb|CB074582.1|CB074582 EST0088 Virulent Peronospora parasit... 44 0.017
gb|CB074854.1|CB074854 EST03007 Arabidopsis Acute Ozone poo... 44 0.017
gb|CB074862.1|CB074862 EST03015 Arabidopsis Acute Ozone poo... 44 0.017
gb|CB074863.1|CB074863 EST03016 Arabidopsis Acute Ozone poo... 44 0.017
gb|CB165160.1|CB165160 EST00996 Virulent Peronospora parasi... 44 0.017
emb|AX505609.1| Sequence 304 from Patent WO0216655 44 0.017
gb|AQ959311.1|AQ959311 LEREI91TF LERE Arabidopsis thaliana ... 42 0.066
gb|AQ959312.1|AQ959312 LEREI91TR LERE Arabidopsis thaliana ... 42 0.066
emb|AJ595464.1| Arabidopsis thaliana T-DNA flanking sequenc... 42 0.066
gb|BE845176.1|BE845176 AD08A02T7 AD A. thaliana (Col-0 gl1)... 42 0.066
gb|CB185611.1|CB185611 EST00536 Arabidopsis avirulent Pseud... 42 0.066
gb|CB185622.1|CB185622 EST00547 Arabidopsis avirulent Pseud... 42 0.066
gb|CB185497.1|CB185497 EST00030 Arabidopsis Salicylic Acid ... 42 0.066
gb|CB185498.1|CB185498 EST00031 Arabidopsis Salicylic Acid ... 42 0.066
gb|CB185499.1|CB185499 EST00032 Arabidopsis Salicylic Acid ... 42 0.066
gb|CB185509.1|CB185509 EST00042 Arabidopsis Salicylic Acid ... 42 0.066
gb|CB185511.1|CB185511 EST00044 Arabidopsis Salicylic Acid ... 42 0.066
gb|CB185512.1|CB185512 EST00045 Arabidopsis Salicylic Acid ... 42 0.066
gb|CB185532.1|CB185532 EST00065 Arabidopsis Salicylic Acid ... 42 0.066
gb|CB074186.1|CB074186 EST02508 Early Ovule Development For... 42 0.066
gb|CB074279.1|CB074279 EST00792 Virulent Peronospora parasi... 42 0.066
gb|CB097368.1|CB097368 EST00995 Virulent Peronospora parasi... 42 0.066
gb|CF772955.1|CF772955 AG_FSL_10D03 Arabidopsis ag-1 35S:AG... 42 0.066
gb|U58918.1|ATU58918 Arabidopsis thaliana MEK kinase (MAP3K... 42 0.066
gb|AY062439.1| Arabidopsis thaliana putative glucanse (At2g... 42 0.066
gb|AF507018.1| Arabidopsis thaliana auxin transport protein... 42 0.066
emb|AX507774.1| Sequence 2469 from Patent WO0216655 42 0.066
gb|BT008885.1| Arabidopsis thaliana At2g32990 mRNA, complet... 42 0.066
gb|AC009755.7|ATAC009755 Arabidopsis thaliana chromosome II... 42 0.066
gb|AC003033.3| Arabidopsis thaliana chromosome 2 BAC T21L14... 42 0.066
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 42 0.066
emb|AJ010090.1|ATH010090 Arabidopsis thaliana mRNA for MAP3... 42 0.066
emb|AJ272202.1|ATH272202 Arabidopsis thaliana mRNA for mito... 42 0.066
emb|AJ293797.1|ATH293797 Arabidopsis thaliana mRNA for SC35... 42 0.066
emb|CS137270.1| Sequence 241 from Patent WO2005047516 42 0.066
ref|NM_111093.2| Arabidopsis thaliana BIG (DARK OVER-EXPRES... 42 0.066
ref|NM_128859.2| Arabidopsis thaliana hydrolase, hydrolyzin... 42 0.066
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 42 0.066
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 42 0.066
gb|CB185573.1|CB185573 EST000106 Arabidopsis Salicylic Acid... 40 0.26
gb|CB185528.1|CB185528 EST00061 Arabidopsis Salicylic Acid ... 40 0.26
gb|CB074227.1|CB074227 EST01003 Virulent Peronospora parasi... 40 0.26
gb|CB074952.1|CB074952 EST03017 Arabidopsis Acute Ozone poo... 40 0.26
gb|CF772953.1|CF772953 AG_FSL_10D01 Arabidopsis ag-1 35S:AG... 40 0.26
gb|CF773912.1|CF773912 AG_FSL_24D10 Arabidopsis ag-1 35S:AG... 40 0.26
>gb|CB256384.1|CB256384 80-E011583-027-006-P20-T7R MPIZ-ADIS-027 Arabidopsis thaliana cDNA
clone MPIZp772P206Q 5-PRIME, mRNA sequence
Length = 488
Score = 58.0 bits (29), Expect = 1e-006
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 151 ggccttttgtagtcgatgtcctctggtctcatccagcagtaatggtcattagg 203
|||||||| ||||| || ||||| |||| |||||| |||||||||||||||||
Sbjct: 108 ggccttttatagtccatatcctcaggtcgcatccaacagtaatggtcattagg 56
>gb|CF652570.1|CF652570 63-L020578-066-004-M16-SP6P MPIZ-ADIS-066 Arabidopsis thaliana cDNA
clone MPIZp2001M164Q 5-PRIME, mRNA sequence
Length = 888
Score = 58.0 bits (29), Expect = 1e-006
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 151 ggccttttgtagtcgatgtcctctggtctcatccagcagtaatggtcattagg 203
|||||||| ||||| || ||||| |||| |||||| |||||||||||||||||
Sbjct: 855 ggccttttatagtccatatcctcaggtcgcatccaacagtaatggtcattagg 803
>gb|AF074092.1|AF074092 Arabidopsis thaliana cellulase (DEC) gene, complete cds
Length = 4033
Score = 58.0 bits (29), Expect = 1e-006
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 151 ggccttttgtagtcgatgtcctctggtctcatccagcagtaatggtcattagg 203
|||||||| ||||| || ||||| |||| |||||| |||||||||||||||||
Sbjct: 1911 ggccttttatagtccatatcctcaggtcgcatccaacagtaatggtcattagg 1859
>gb|AF074375.1|AF074375 Arabidopsis thaliana cellulase (DEC) mRNA, complete cds
Length = 2179
Score = 58.0 bits (29), Expect = 1e-006
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 151 ggccttttgtagtcgatgtcctctggtctcatccagcagtaatggtcattagg 203
|||||||| ||||| || ||||| |||| |||||| |||||||||||||||||
Sbjct: 836 ggccttttatagtccatatcctcaggtcgcatccaacagtaatggtcattagg 784
>gb|AF073875.1|AF073875 Arabidopsis thaliana endo-1,4-beta-D-glucanase KORRIGAN (KOR) gene,
KOR-1 allele, complete cds
Length = 2873
Score = 58.0 bits (29), Expect = 1e-006
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 151 ggccttttgtagtcgatgtcctctggtctcatccagcagtaatggtcattagg 203
|||||||| ||||| || ||||| |||| |||||| |||||||||||||||||
Sbjct: 1072 ggccttttatagtccatatcctcaggtcgcatccaacagtaatggtcattagg 1020
>gb|U37702.1|ATU37702 Arabidopsis thaliana cellulase (OR16pep) mRNA, complete cds
Length = 2257
Score = 58.0 bits (29), Expect = 1e-006
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 151 ggccttttgtagtcgatgtcctctggtctcatccagcagtaatggtcattagg 203
|||||||| ||||| || ||||| |||| |||||| |||||||||||||||||
Sbjct: 843 ggccttttatagtccatatcctcaggtcgcatccaacagtaatggtcattagg 791
>emb|A83259.1| Sequence 1 from Patent WO9850568
Length = 2257
Score = 58.0 bits (29), Expect = 1e-006
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 151 ggccttttgtagtcgatgtcctctggtctcatccagcagtaatggtcattagg 203
|||||||| ||||| || ||||| |||| |||||| |||||||||||||||||
Sbjct: 843 ggccttttatagtccatatcctcaggtcgcatccaacagtaatggtcattagg 791
>gb|AY037218.1| Arabidopsis thaliana AT5g49720/K2I5_8 mRNA, complete cds
Length = 2307
Score = 58.0 bits (29), Expect = 1e-006
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 151 ggccttttgtagtcgatgtcctctggtctcatccagcagtaatggtcattagg 203
|||||||| ||||| || ||||| |||| |||||| |||||||||||||||||
Sbjct: 893 ggccttttatagtccatatcctcaggtcgcatccaacagtaatggtcattagg 841
>dbj|E64634.1| Method for modifying plant cell wall component
Length = 2257
Score = 58.0 bits (29), Expect = 1e-006
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 151 ggccttttgtagtcgatgtcctctggtctcatccagcagtaatggtcattagg 203
|||||||| ||||| || ||||| |||| |||||| |||||||||||||||||
Sbjct: 843 ggccttttatagtccatatcctcaggtcgcatccaacagtaatggtcattagg 791
>dbj|E64635.1| Method for modifying plant cell wall component
Length = 12319
Score = 58.0 bits (29), Expect = 1e-006
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 151 ggccttttgtagtcgatgtcctctggtctcatccagcagtaatggtcattagg 203
|||||||| ||||| || ||||| |||| |||||| |||||||||||||||||
Sbjct: 4370 ggccttttatagtccatatcctcaggtcgcatccaacagtaatggtcattagg 4318
>gb|BT002221.1| Arabidopsis thaliana At5g49720/K2I5_8 mRNA, complete cds
Length = 1866
Score = 58.0 bits (29), Expect = 1e-006
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 151 ggccttttgtagtcgatgtcctctggtctcatccagcagtaatggtcattagg 203
|||||||| ||||| || ||||| |||| |||||| |||||||||||||||||
Sbjct: 773 ggccttttatagtccatatcctcaggtcgcatccaacagtaatggtcattagg 721
>gb|AY086165.1| Arabidopsis thaliana clone 21922 mRNA, complete sequence
Length = 2303
Score = 58.0 bits (29), Expect = 1e-006
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 151 ggccttttgtagtcgatgtcctctggtctcatccagcagtaatggtcattagg 203
|||||||| ||||| || ||||| |||| |||||| |||||||||||||||||
Sbjct: 893 ggccttttatagtccatatcctcaggtcgcatccaacagtaatggtcattagg 841
>dbj|AB025613.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K2I5
Length = 71807
Score = 58.0 bits (29), Expect = 1e-006
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 151 ggccttttgtagtcgatgtcctctggtctcatccagcagtaatggtcattagg 203
|||||||| ||||| || ||||| |||| |||||| |||||||||||||||||
Sbjct: 36250 ggccttttatagtccatatcctcaggtcgcatccaacagtaatggtcattagg 36302
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 58.0 bits (29), Expect = 1e-006
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 151 ggccttttgtagtcgatgtcctctggtctcatccagcagtaatggtcattagg 203
|||||||| ||||| || ||||| |||| |||||| |||||||||||||||||
Sbjct: 18199372 ggccttttatagtccatatcctcaggtcgcatccaacagtaatggtcattagg 18199424
>ref|NM_124350.2| Arabidopsis thaliana KOR1 (KORRIGAN); hydrolase, hydrolyzing
O-glycosyl compounds AT5G49720 (KOR1) mRNA, complete cds
Length = 2360
Score = 58.0 bits (29), Expect = 1e-006
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 151 ggccttttgtagtcgatgtcctctggtctcatccagcagtaatggtcattagg 203
|||||||| ||||| || ||||| |||| |||||| |||||||||||||||||
Sbjct: 893 ggccttttatagtccatatcctcaggtcgcatccaacagtaatggtcattagg 841
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 58.0 bits (29), Expect = 1e-006
Identities = 47/53 (88%)
Strand = Plus / Plus
Query: 151 ggccttttgtagtcgatgtcctctggtctcatccagcagtaatggtcattagg 203
|||||||| ||||| || ||||| |||| |||||| |||||||||||||||||
Sbjct: 20216471 ggccttttatagtccatatcctcaggtcgcatccaacagtaatggtcattagg 20216523
>emb|BX661189.1| Arabidopsis thaliana T-DNA flanking sequence GK-671F07-022932,
genomic survey sequence
Length = 108
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 351 gtacctcggccgcgaccacgcta 373
|||||||||||||||||||||||
Sbjct: 61 gtacctcggccgcgaccacgcta 39
>emb|BX662798.1| Arabidopsis thaliana T-DNA flanking sequence GK-708G03-022965,
genomic survey sequence
Length = 436
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 351 gtacctcggccgcgaccacgcta 373
|||||||||||||||||||||||
Sbjct: 61 gtacctcggccgcgaccacgcta 39
>emb|BX663297.1| Arabidopsis thaliana T-DNA flanking sequence GK-712B10-022963,
genomic survey sequence
Length = 498
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 351 gtacctcggccgcgaccacgcta 373
|||||||||||||||||||||||
Sbjct: 428 gtacctcggccgcgaccacgcta 450
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 351 gtacctcggccgcgaccacg 370
||||||||||||||||||||
Sbjct: 68 gtacctcggccgcgaccacg 49
>gb|CB185570.1|CB185570 EST000103 Arabidopsis Salicylic Acid Subtracted Library Arabidopsis
thaliana cDNA clone SA1-B11 similar to putative
UDP-glucose glucosyltransferase, mRNA sequence
Length = 548
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 351 gtacctcggccgcgaccacgcta 373
|||||||||||||||||||||||
Sbjct: 526 gtacctcggccgcgaccacgcta 548
>gb|CB185577.1|CB185577 EST000110 Arabidopsis Salicylic Acid Subtracted Library Arabidopsis
thaliana cDNA clone SA4-C7 similar to putative coatomer
complex subunit, has G-protein beta with WD-40 repeats,
mRNA sequence
Length = 489
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 351 gtacctcggccgcgaccacgcta 373
|||||||||||||||||||||||
Sbjct: 465 gtacctcggccgcgaccacgcta 487
>gb|CB185485.1|CB185485 EST00018 Arabidopsis Salicylic Acid Subtracted Library Arabidopsis
thaliana cDNA clone SA1-D1 similar to glucosyl
transferase, mRNA sequence
Length = 388
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 351 gtacctcggccgcgaccacgcta 373
|||||||||||||||||||||||
Sbjct: 365 gtacctcggccgcgaccacgcta 387
>gb|CB185533.1|CB185533 EST00066 Arabidopsis Salicylic Acid Subtracted Library Arabidopsis
thaliana cDNA clone SA2-G10 similar to putative
glutathione S-transferase, mRNA sequence
Length = 735
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 351 gtacctcggccgcgaccacgcta 373
|||||||||||||||||||||||
Sbjct: 64 gtacctcggccgcgaccacgcta 42
>gb|CB185851.1|CB185851 EST01042 Arabidopsis virulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone DC3-D6 similar
to UDP-glucosyl transferase, mRNA sequence
Length = 414
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 351 gtacctcggccgcgaccacgcta 373
|||||||||||||||||||||||
Sbjct: 392 gtacctcggccgcgaccacgcta 414
>emb|BX662728.1| Arabidopsis thaliana T-DNA flanking sequence GK-708B12-022965,
genomic survey sequence
Length = 378
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ttcgagcggccgcccgggcagg 22
||||||||||||||||||||||
Sbjct: 27 ttcgagcggccgcccgggcagg 48
>emb|BX662824.1| Arabidopsis thaliana T-DNA flanking sequence GK-708H07-022965,
genomic survey sequence
Length = 416
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ttcgagcggccgcccgggcagg 22
||||||||||||||||||||||
Sbjct: 28 ttcgagcggccgcccgggcagg 49
>gb|BE845139.1|BE845139 AD07D05T7 AD A. thaliana (Col-0 gl1) subtracted library enriched
for salt-induced transcripts;10-14 day seedlings 4h
160mM NaCl stress Arabidopsis thaliana cDNA clone
AD07D05 similar to probable lipid transfer protein
T8F5.2, mRNA sequence
Length = 462
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 352 tacctcggccgcgaccacgcta 373
||||||||||||||||||||||
Sbjct: 417 tacctcggccgcgaccacgcta 438
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 352 tacctcggccgcgaccacgcta 373
||||||||||||||||||||||
Sbjct: 378 tacctcggccgcgaccacgcta 399
>gb|BE662730.1|BE662730 EST00251 Arabidopsis Acute Ozone Reverse-Subtracted Library
Arabidopsis thaliana cDNA clone AtAOzHA7 similar to
small nuclear ribosomal protein E, mRNA sequence
Length = 263
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 ttcgagcggccgcccgggcagg 22
||||||||||||||||||||||
Sbjct: 263 ttcgagcggccgcccgggcagg 242
>gb|BE662731.1|BE662731 EST00252 Arabidopsis Acute Ozone Reverse-Subtracted Library
Arabidopsis thaliana cDNA clone AtAOzHA9, mRNA sequence
Length = 328
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 ttcgagcggccgcccgggcagg 22
||||||||||||||||||||||
Sbjct: 328 ttcgagcggccgcccgggcagg 307
>gb|BE662737.1|BE662737 EST00258 Arabidopsis Acute Ozone Reverse-Subtracted Library
Arabidopsis thaliana cDNA clone AtaOzHC2 similar to
Lhca2 chlorophyll a/b-binding protein, mRNA sequence
Length = 450
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ttcgagcggccgcccgggcagg 22
||||||||||||||||||||||
Sbjct: 57 ttcgagcggccgcccgggcagg 78
>gb|CB185793.2|CB185793 EST00720 Arabidopsis avirulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone RPM3-G9 similar
to ARF GAP-like zinc finger-containing protein (ZIGA2),
mRNA sequence
Length = 746
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ttcgagcggccgcccgggcagg 22
||||||||||||||||||||||
Sbjct: 47 ttcgagcggccgcccgggcagg 68
>gb|CB185474.1|CB185474 EST00007 Arabidopsis Salicylic Acid Subtracted Library Arabidopsis
thaliana cDNA clone SA1-A9 similar to transcription
factor ZAP1, mRNA sequence
Length = 460
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 352 tacctcggccgcgaccacgcta 373
||||||||||||||||||||||
Sbjct: 439 tacctcggccgcgaccacgcta 460
>gb|CB185495.1|CB185495 EST00028 Arabidopsis Salicylic Acid Subtracted Library Arabidopsis
thaliana cDNA clone SA1-E10 similar to NADH
dehygrogenase-like protein, mRNA sequence
Length = 979
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 352 tacctcggccgcgaccacgcta 373
||||||||||||||||||||||
Sbjct: 514 tacctcggccgcgaccacgcta 535
>gb|CB185508.1|CB185508 EST00041 Arabidopsis Salicylic Acid Subtracted Library Arabidopsis
thaliana cDNA clone SA1-G7 similar to putative Tub
family protein, mRNA sequence
Length = 378
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 352 tacctcggccgcgaccacgcta 373
||||||||||||||||||||||
Sbjct: 357 tacctcggccgcgaccacgcta 378
>gb|CB185880.1|CB185880 EST01071 Arabidopsis virulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone DC4-H4 similar
to putative protein with homology to rubisco small
subunit, mRNA sequence
Length = 370
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ttcgagcggccgcccgggcagg 22
||||||||||||||||||||||
Sbjct: 60 ttcgagcggccgcccgggcagg 81
>gb|CB185942.1|CB185942 EST01133 Arabidopsis virulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone DC8-G7 similar
to putative 60S ribosomal protein L18, mRNA sequence
Length = 602
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ttcgagcggccgcccgggcagg 22
||||||||||||||||||||||
Sbjct: 46 ttcgagcggccgcccgggcagg 67
>gb|CB185943.1|CB185943 EST01134 Arabidopsis virulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone DC8-H5 similar
to WD repeat domain containing protein, mRNA sequence
Length = 473
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 ttcgagcggccgcccgggcagg 22
||||||||||||||||||||||
Sbjct: 361 ttcgagcggccgcccgggcagg 340
Score = 42.1 bits (21), Expect = 0.066
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 353 acctcggccgcgaccacgcta 373
|||||||||||||||||||||
Sbjct: 89 acctcggccgcgaccacgcta 69
>gb|CB239324.1|CB239324 EST01145 Arabidopsis virulent Pseudomonas syringae subtracted
library Arabidopsis thaliana cDNA clone DC1-C2 similar
to putative tyrosine aminotransferase, mRNA sequence
Length = 579
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ttcgagcggccgcccgggcagg 22
||||||||||||||||||||||
Sbjct: 35 ttcgagcggccgcccgggcagg 56
>gb|CB074223.1|CB074223 EST01000 Virulent Peronospora parasitica Infected Arabidopsis
reverse-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-RAA10 similar to chlorophyll a/b-binding
protein, mRNA sequence
Length = 527
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 ttcgagcggccgcccgggcagg 22
||||||||||||||||||||||
Sbjct: 390 ttcgagcggccgcccgggcagg 369
>gb|CB074411.1|CB074411 EST00927 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-FF9 similar to UNKNOWN PROTEIN, mRNA sequence
Length = 421
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 ttcgagcggccgcccgggcagg 22
||||||||||||||||||||||
Sbjct: 421 ttcgagcggccgcccgggcagg 400
>gb|CB074582.1|CB074582 EST0088 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-EB10, mRNA sequence
Length = 406
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 ttcgagcggccgcccgggcagg 22
||||||||||||||||||||||
Sbjct: 406 ttcgagcggccgcccgggcagg 385
>gb|CB074854.1|CB074854 EST03007 Arabidopsis Acute Ozone pooled time-points
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone AtAOzLC01 similar to PSII 32Kda protein, mRNA
sequence
Length = 358
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 ttcgagcggccgcccgggcagg 22
||||||||||||||||||||||
Sbjct: 353 ttcgagcggccgcccgggcagg 332
>gb|CB074862.1|CB074862 EST03015 Arabidopsis Acute Ozone pooled time-points
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone AtAOzLH04 similar to PsbA gene in chloroplast
genome, mRNA sequence
Length = 360
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 ttcgagcggccgcccgggcagg 22
||||||||||||||||||||||
Sbjct: 356 ttcgagcggccgcccgggcagg 335
>gb|CB074863.1|CB074863 EST03016 Arabidopsis Acute Ozone pooled time-points
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone AtAOzLH10 similar to putative protein, mRNA
sequence
Length = 305
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 ttcgagcggccgcccgggcagg 22
||||||||||||||||||||||
Sbjct: 302 ttcgagcggccgcccgggcagg 281
>gb|CB165160.1|CB165160 EST00996 Virulent Peronospora parasitica Infected Arabidopsis
Forward-Subtracted Library Arabidopsis thaliana cDNA
clone VPP-EH12 similar to putative protein, mRNA
sequence
Length = 271
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 ttcgagcggccgcccgggcagg 22
||||||||||||||||||||||
Sbjct: 271 ttcgagcggccgcccgggcagg 250
>emb|AX505609.1| Sequence 304 from Patent WO0216655
Length = 414
Score = 44.1 bits (22), Expect = 0.017
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ttcgagcggccgcccgggcagg 22
||||||||||||||||||||||
Sbjct: 6 ttcgagcggccgcccgggcagg 27
>gb|AQ959311.1|AQ959311 LEREI91TF LERE Arabidopsis thaliana genomic clone LEREI91, DNA
sequence
Length = 650
Score = 42.1 bits (21), Expect = 0.066
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 294 gtagtctgttccccacttgat 314
|||||||||||||||||||||
Sbjct: 244 gtagtctgttccccacttgat 224
>gb|AQ959312.1|AQ959312 LEREI91TR LERE Arabidopsis thaliana genomic clone LEREI91, DNA
sequence
Length = 676
Score = 42.1 bits (21), Expect = 0.066
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 294 gtagtctgttccccacttgat 314
|||||||||||||||||||||
Sbjct: 537 gtagtctgttccccacttgat 557
>emb|AJ595464.1| Arabidopsis thaliana T-DNA flanking sequence, left border, clone
417C12, genomic survey sequence
Length = 541
Score = 42.1 bits (21), Expect = 0.066
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 2 tcgagcggccgcccgggcagg 22
|||||||||||||||||||||
Sbjct: 22 tcgagcggccgcccgggcagg 2
>gb|BE845176.1|BE845176 AD08A02T7 AD A. thaliana (Col-0 gl1) subtracted library enriched
for salt-induced transcripts;10-14 day seedlings 4h
160mM NaCl stress Arabidopsis thaliana cDNA clone
AD08A02 similar to peroxidase precursor, mRNA sequence
Length = 163
Score = 42.1 bits (21), Expect = 0.066
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 353 acctcggccgcgaccacgcta 373
|||||||||||||||||||||
Sbjct: 139 acctcggccgcgaccacgcta 159
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 121,803
Number of Sequences: 1013581
Number of extensions: 121803
Number of successful extensions: 10599
Number of sequences better than 0.5: 87
Number of HSP's better than 0.5 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10324
Number of HSP's gapped (non-prelim): 275
length of query: 373
length of database: 908,940,872
effective HSP length: 19
effective length of query: 354
effective length of database: 889,682,833
effective search space: 314947722882
effective search space used: 314947722882
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)