BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4573929.2.1
(691 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV786670.1|AV786670 AV786670 RAFL6 Arabidopsis thaliana ... 66 9e-009
gb|BP573464.1|BP573464 BP573464 RAFL14 Arabidopsis thaliana... 66 9e-009
gb|BP573678.1|BP573678 BP573678 RAFL14 Arabidopsis thaliana... 66 9e-009
gb|BP591385.1|BP591385 BP591385 RAFL15 Arabidopsis thaliana... 66 9e-009
gb|BP609141.1|BP609141 BP609141 RAFL16 Arabidopsis thaliana... 66 9e-009
gb|AY140073.1| Arabidopsis thaliana UDP-galactose 4-epimera... 66 9e-009
gb|AY065354.1| Arabidopsis thaliana putative UDP-galactose ... 66 9e-009
gb|AY117180.1| Arabidopsis thaliana putative UDP-galactose ... 66 9e-009
gb|AY085528.1| Arabidopsis thaliana clone 15608 mRNA, compl... 66 9e-009
emb|BX827643.1|CNS0A2DZ Arabidopsis thaliana Full-length cD... 66 9e-009
emb|BX827147.1|CNS0A3P3 Arabidopsis thaliana Full-length cD... 66 9e-009
emb|BX827895.1|CNS0A3UR Arabidopsis thaliana Full-length cD... 66 9e-009
emb|BX826665.1|CNS0A44W Arabidopsis thaliana Full-length cD... 66 9e-009
ref|NM_117165.2| Arabidopsis thaliana triacylglycerol lipas... 66 9e-009
ref|NM_117166.2| Arabidopsis thaliana NAD binding / UDP-glu... 66 9e-009
gb|BP566960.1|BP566960 BP566960 RAFL14 Arabidopsis thaliana... 58 2e-006
gb|BP575359.1|BP575359 BP575359 RAFL14 Arabidopsis thaliana... 58 2e-006
gb|AF080118.1|F8M12 Arabidopsis thaliana BAC F8M12 58 2e-006
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 58 2e-006
emb|AL049525.1|ATF25I24 Arabidopsis thaliana DNA chromosome... 58 2e-006
emb|AL161518.2|ATCHRIV30 Arabidopsis thaliana DNA chromosom... 58 2e-006
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 58 2e-006
gb|AV819967.1|AV819967 AV819967 RAFL11 Arabidopsis thaliana... 54 3e-005
gb|AV541983.1|AV541983 AV541983 Arabidopsis thaliana roots ... 54 3e-005
gb|AY084615.1| Arabidopsis thaliana clone 11330 mRNA, compl... 54 3e-005
gb|BT008539.1| Arabidopsis thaliana clone U51171 putative U... 54 3e-005
dbj|AK118722.1| Arabidopsis thaliana At4g23920 mRNA for put... 54 3e-005
ref|NM_118524.2| Arabidopsis thaliana NAD binding / UDP-glu... 54 3e-005
emb|CR770373.1| Arabidopsis thaliana T-DNA flanking sequenc... 52 1e-004
emb|BX290909.1| Arabidopsis thaliana T-DNA flanking sequenc... 48 0.002
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 48 0.002
gb|AC079028.11|AC079028 Arabidopsis thaliana chromosome 1 B... 48 0.002
dbj|AP002059.1| Arabidopsis thaliana genomic DNA, chromosom... 48 0.002
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 48 0.002
emb|AL078468.1|ATT32A16 Arabidopsis thaliana DNA chromosome... 48 0.002
emb|AL161560.2|ATCHRIV60 Arabidopsis thaliana DNA chromosom... 48 0.002
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 48 0.002
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 48 0.002
gb|AU230919.1|AU230919 AU230919 RAFL21 Arabidopsis thaliana... 46 0.008
emb|BX841511.1|CNS09YH0 Arabidopsis thaliana Full-length cD... 46 0.008
gb|B20556.1|B20556 F3F19-T7.1 IGF Arabidopsis thaliana geno... 42 0.12
gb|CL508148.1|CL508148 SAIL_792_G03.v3 SAIL Collection Arab... 42 0.12
gb|F13966.1|F13966 ATTS4888 Versailles-VB Arabidopsis thali... 42 0.12
gb|AI100184.1|AI100184 34559 Lambda-PRL2 Arabidopsis thalia... 42 0.12
gb|AI998807.1|AI998807 701546969 A. thaliana, Columbia Col-... 42 0.12
gb|AU229988.1|AU229988 AU229988 RAFL19 Arabidopsis thaliana... 42 0.12
gb|AV782794.1|AV782794 AV782794 RAFL5 Arabidopsis thaliana ... 42 0.12
gb|AV783652.1|AV783652 AV783652 RAFL5 Arabidopsis thaliana ... 42 0.12
gb|AV789111.1|AV789111 AV789111 RAFL6 Arabidopsis thaliana ... 42 0.12
gb|AV799803.1|AV799803 AV799803 RAFL9 Arabidopsis thaliana ... 42 0.12
gb|AV804035.1|AV804035 AV804035 RAFL9 Arabidopsis thaliana ... 42 0.12
gb|AV805491.1|AV805491 AV805491 RAFL9 Arabidopsis thaliana ... 42 0.12
gb|AV814433.1|AV814433 AV814433 RAFL9 Arabidopsis thaliana ... 42 0.12
gb|AV817506.1|AV817506 AV817506 RAFL9 Arabidopsis thaliana ... 42 0.12
gb|AV818807.1|AV818807 AV818807 RAFL9 Arabidopsis thaliana ... 42 0.12
gb|CD530974.1|CD530974 08N03 Arabidopsis Leaf Senescence Li... 42 0.12
gb|AV441092.1|AV441092 AV441092 Arabidopsis thaliana above-... 42 0.12
gb|AV557220.1|AV557220 AV557220 Arabidopsis thaliana green ... 42 0.12
gb|AV567675.1|AV567675 AV567675 Arabidopsis thaliana green ... 42 0.12
gb|CK120462.1|CK120462 218k05.p1 AtM1 Arabidopsis thaliana ... 42 0.12
gb|BP579707.1|BP579707 BP579707 RAFL14 Arabidopsis thaliana... 42 0.12
gb|BP590450.1|BP590450 BP590450 RAFL15 Arabidopsis thaliana... 42 0.12
gb|BP590761.1|BP590761 BP590761 RAFL15 Arabidopsis thaliana... 42 0.12
gb|BP591727.1|BP591727 BP591727 RAFL15 Arabidopsis thaliana... 42 0.12
gb|BP603971.1|BP603971 BP603971 RAFL16 Arabidopsis thaliana... 42 0.12
gb|BP605082.1|BP605082 BP605082 RAFL16 Arabidopsis thaliana... 42 0.12
gb|BP618245.1|BP618245 BP618245 RAFL16 Arabidopsis thaliana... 42 0.12
gb|BP618646.1|BP618646 BP618646 RAFL16 Arabidopsis thaliana... 42 0.12
gb|BP622585.1|BP622585 BP622585 RAFL17 Arabidopsis thaliana... 42 0.12
gb|BP623370.1|BP623370 BP623370 RAFL17 Arabidopsis thaliana... 42 0.12
gb|BP630915.1|BP630915 BP630915 RAFL17 Arabidopsis thaliana... 42 0.12
gb|BP631795.1|BP631795 BP631795 RAFL17 Arabidopsis thaliana... 42 0.12
gb|BP639411.1|BP639411 BP639411 RAFL19 Arabidopsis thaliana... 42 0.12
gb|BP639888.1|BP639888 BP639888 RAFL19 Arabidopsis thaliana... 42 0.12
gb|BP640883.1|BP640883 BP640883 RAFL19 Arabidopsis thaliana... 42 0.12
gb|BP641051.1|BP641051 BP641051 RAFL19 Arabidopsis thaliana... 42 0.12
gb|BP657307.1|BP657307 BP657307 RAFL19 Arabidopsis thaliana... 42 0.12
gb|BP657520.1|BP657520 BP657520 RAFL19 Arabidopsis thaliana... 42 0.12
gb|BP658658.1|BP658658 BP658658 RAFL19 Arabidopsis thaliana... 42 0.12
gb|AY054207.1| Arabidopsis thaliana At1g12780/F13K23_21 mRN... 42 0.12
gb|AY094481.1| Arabidopsis thaliana At1g63180/F16M19_8 mRNA... 42 0.12
gb|AY120709.1| Arabidopsis thaliana uridine diphosphate glu... 42 0.12
gb|BT000032.1| Arabidopsis thaliana uridine diphosphate glu... 42 0.12
emb|AX507662.1| Sequence 2357 from Patent WO0216655 42 0.12
gb|AY085887.1| Arabidopsis thaliana clone 1932 mRNA, comple... 42 0.12
gb|AF334724.1| Arabidopsis thaliana clone C00128 (e) putati... 42 0.12
gb|AC012187.3|F13K23 Sequence of BAC F13K23 from Arabidopsi... 42 0.12
gb|AC010795.5|AC010795 Arabidopsis thaliana chromosome 1 BA... 42 0.12
dbj|AK117913.1| Arabidopsis thaliana At1g63180 mRNA for put... 42 0.12
emb|Z54214.1|ATUDGE A.thaliana mRNA for uridine diphosphate... 42 0.12
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 42 0.12
ref|NM_104996.3| Arabidopsis thaliana NAD binding / UDP-glu... 42 0.12
ref|NM_101148.3| Arabidopsis thaliana UDP-glucose 4-epimera... 42 0.12
>gb|AV786670.1|AV786670 AV786670 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-72-G11 3',
mRNA sequence
Length = 422
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 268 tggaaggccaagtacgggatcgaggagatgtgcagagatctgtggaactgggc 320
||||||||||| || ||||| ||||||||||| |||||| |||||||||||||
Sbjct: 304 tggaaggccaaatatgggattgaggagatgtgtagagatttgtggaactgggc 252
>gb|BP573464.1|BP573464 BP573464 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-84-G06 3',
mRNA sequence
Length = 376
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 268 tggaaggccaagtacgggatcgaggagatgtgcagagatctgtggaactgggc 320
||||||||||| || ||||| ||||||||||| |||||| |||||||||||||
Sbjct: 301 tggaaggccaaatatgggattgaggagatgtgtagagatttgtggaactgggc 249
>gb|BP573678.1|BP573678 BP573678 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-85-D18 3',
mRNA sequence
Length = 373
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 268 tggaaggccaagtacgggatcgaggagatgtgcagagatctgtggaactgggc 320
||||||||||| || ||||| ||||||||||| |||||| |||||||||||||
Sbjct: 301 tggaaggccaaatatgggattgaggagatgtgtagagatttgtggaactgggc 249
>gb|BP591385.1|BP591385 BP591385 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-14-H21 3',
mRNA sequence
Length = 453
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 268 tggaaggccaagtacgggatcgaggagatgtgcagagatctgtggaactgggc 320
||||||||||| || ||||| ||||||||||| |||||| |||||||||||||
Sbjct: 301 tggaaggccaaatatgggattgaggagatgtgtagagatttgtggaactgggc 249
>gb|BP609141.1|BP609141 BP609141 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-81-B12 3',
mRNA sequence
Length = 400
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Minus
Query: 268 tggaaggccaagtacgggatcgaggagatgtgcagagatctgtggaactgggc 320
||||||||||| || ||||| ||||||||||| |||||| |||||||||||||
Sbjct: 332 tggaaggccaaatatgggattgaggagatgtgtagagatttgtggaactgggc 280
>gb|AY140073.1| Arabidopsis thaliana UDP-galactose 4-epimerase-like protein
(At4g10960) mRNA, complete cds
Length = 2800
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 268 tggaaggccaagtacgggatcgaggagatgtgcagagatctgtggaactgggc 320
||||||||||| || ||||| ||||||||||| |||||| |||||||||||||
Sbjct: 1034 tggaaggccaaatatgggattgaggagatgtgtagagatttgtggaactgggc 1086
>gb|AY065354.1| Arabidopsis thaliana putative UDP-galactose 4-epimerase (At4g10960)
mRNA, complete cds
Length = 1356
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 268 tggaaggccaagtacgggatcgaggagatgtgcagagatctgtggaactgggc 320
||||||||||| || ||||| ||||||||||| |||||| |||||||||||||
Sbjct: 1034 tggaaggccaaatatgggattgaggagatgtgtagagatttgtggaactgggc 1086
>gb|AY117180.1| Arabidopsis thaliana putative UDP-galactose 4-epimerase (At4g10960)
mRNA, complete cds
Length = 1087
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 268 tggaaggccaagtacgggatcgaggagatgtgcagagatctgtggaactgggc 320
||||||||||| || ||||| ||||||||||| |||||| |||||||||||||
Sbjct: 952 tggaaggccaaatatgggattgaggagatgtgtagagatttgtggaactgggc 1004
>gb|AY085528.1| Arabidopsis thaliana clone 15608 mRNA, complete sequence
Length = 1286
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 268 tggaaggccaagtacgggatcgaggagatgtgcagagatctgtggaactgggc 320
||||||||||| || ||||| ||||||||||| |||||| |||||||||||||
Sbjct: 1030 tggaaggccaaatatgggattgaggagatgtgtagagatttgtggaactgggc 1082
>emb|BX827643.1|CNS0A2DZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS8ZA03 of Adult vegetative tissue of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1272
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 268 tggaaggccaagtacgggatcgaggagatgtgcagagatctgtggaactgggc 320
||||||||||| || ||||| ||||||||||| |||||| |||||||||||||
Sbjct: 1000 tggaaggccaaatatgggattgaggagatgtgtagagatttgtggaactgggc 1052
>emb|BX827147.1|CNS0A3P3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS16ZC07 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1253
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 268 tggaaggccaagtacgggatcgaggagatgtgcagagatctgtggaactgggc 320
||||||||||| || ||||| ||||||||||| |||||| |||||||||||||
Sbjct: 1017 tggaaggccaaatatgggattgaggagatgtgtagagatttgtggaactgggc 1069
>emb|BX827895.1|CNS0A3UR Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH32ZD08 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1339
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 268 tggaaggccaagtacgggatcgaggagatgtgcagagatctgtggaactgggc 320
||||||||||| || ||||| ||||||||||| |||||| |||||||||||||
Sbjct: 1075 tggaaggccaaatatgggattgaggagatgtgtagagatttgtggaactgggc 1127
>emb|BX826665.1|CNS0A44W Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB52ZC08 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1305
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 268 tggaaggccaagtacgggatcgaggagatgtgcagagatctgtggaactgggc 320
||||||||||| || ||||| ||||||||||| |||||| |||||||||||||
Sbjct: 1014 tggaaggccaaatatgggattgaggagatgtgtagagatttgtggaactgggc 1066
>ref|NM_117165.2| Arabidopsis thaliana triacylglycerol lipase AT4G10955 mRNA, complete
cds
Length = 2749
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 268 tggaaggccaagtacgggatcgaggagatgtgcagagatctgtggaactgggc 320
||||||||||| || ||||| ||||||||||| |||||| |||||||||||||
Sbjct: 952 tggaaggccaaatatgggattgaggagatgtgtagagatttgtggaactgggc 1004
>ref|NM_117166.2| Arabidopsis thaliana NAD binding / UDP-glucose 4-epimerase/ catalytic
AT4G10960 mRNA, complete cds
Length = 2827
Score = 65.9 bits (33), Expect = 9e-009
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 268 tggaaggccaagtacgggatcgaggagatgtgcagagatctgtggaactgggc 320
||||||||||| || ||||| ||||||||||| |||||| |||||||||||||
Sbjct: 1030 tggaaggccaaatatgggattgaggagatgtgtagagatttgtggaactgggc 1082
>gb|BP566960.1|BP566960 BP566960 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-55-P11 3',
mRNA sequence
Length = 405
Score = 58.0 bits (29), Expect = 2e-006
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 268 tggaaggccaagtacgggatcgaggagatgtgcagagatctgtggaactgggc 320
||||||||||| || ||||| ||||||||||| |||||| | |||||||||||
Sbjct: 301 tggaaggccaaatatgggattgaggagatgtgtagagatttttggaactgggc 249
>gb|BP575359.1|BP575359 BP575359 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-12-B07 3',
mRNA sequence
Length = 396
Score = 58.0 bits (29), Expect = 2e-006
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 268 tggaaggccaagtacgggatcgaggagatgtgcagagatctgtggaactgggc 320
|||||| |||| || ||||| ||||||||||| |||||| |||||||||||||
Sbjct: 301 tggaagcccaaatatgggattgaggagatgtgtagagatttgtggaactgggc 249
>gb|AF080118.1|F8M12 Arabidopsis thaliana BAC F8M12
Length = 103673
Score = 58.0 bits (29), Expect = 2e-006
Identities = 50/57 (87%)
Strand = Plus / Plus
Query: 264 caaatggaaggccaagtacgggatcgaggagatgtgcagagatctgtggaactgggc 320
|||||| | |||||| || ||||| ||||||||||| |||||| |||||||||||||
Sbjct: 31185 caaatgcagggccaaatatgggattgaggagatgtgtagagatttgtggaactgggc 31241
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 58.0 bits (29), Expect = 2e-006
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 264 caaatggaaggccaagtacgggatcgaggagatgtgcagagatctgtggaactgggc 320
|||||| | |||||| || ||||| ||||||||||| |||||| |||||||||||||
Sbjct: 2628922 caaatgcagggccaaatatgggattgaggagatgtgtagagatttgtggaactgggc 2628866
Score = 48.1 bits (24), Expect = 0.002
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 283 gggatcgaggagatgtgcagagatctgtggaactgggcgagcaagaacccgtacgg 338
||||| ||||||||||| || ||||| ||||| ||||| ||||| ||||| |||||
Sbjct: 8346349 gggatagaggagatgtgtagggatctatggaattgggcaagcaataacccctacgg 8346404
>emb|AL049525.1|ATF25I24 Arabidopsis thaliana DNA chromosome 4, BAC clone F25I24 (ESSA project)
Length = 95799
Score = 58.0 bits (29), Expect = 2e-006
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 264 caaatggaaggccaagtacgggatcgaggagatgtgcagagatctgtggaactgggc 320
|||||| | |||||| || ||||| ||||||||||| |||||| |||||||||||||
Sbjct: 72539 caaatgcagggccaaatatgggattgaggagatgtgtagagatttgtggaactgggc 72483
>emb|AL161518.2|ATCHRIV30 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 30
Length = 198136
Score = 58.0 bits (29), Expect = 2e-006
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 264 caaatggaaggccaagtacgggatcgaggagatgtgcagagatctgtggaactgggc 320
|||||| | |||||| || ||||| ||||||||||| |||||| |||||||||||||
Sbjct: 153563 caaatgcagggccaaatatgggattgaggagatgtgtagagatttgtggaactgggc 153507
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 58.0 bits (29), Expect = 2e-006
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 264 caaatggaaggccaagtacgggatcgaggagatgtgcagagatctgtggaactgggc 320
|||||| | |||||| || ||||| ||||||||||| |||||| |||||||||||||
Sbjct: 6716187 caaatgcagggccaaatatgggattgaggagatgtgtagagatttgtggaactgggc 6716131
Score = 48.1 bits (24), Expect = 0.002
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 283 gggatcgaggagatgtgcagagatctgtggaactgggcgagcaagaacccgtacgg 338
||||| ||||||||||| || ||||| ||||| ||||| ||||| ||||| |||||
Sbjct: 12433587 gggatagaggagatgtgtagggatctatggaattgggcaagcaataacccctacgg 12433642
>gb|AV819967.1|AV819967 AV819967 RAFL11 Arabidopsis thaliana cDNA clone RAFL11-08-D06 3',
mRNA sequence
Length = 416
Score = 54.0 bits (27), Expect = 3e-005
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 268 tggaaggccaagtacgggatcgaggagatgtgcagagatctgtggaactgggcgagcaag 327
|||||||| ||| | ||||| ||||||||||| || ||||| ||||| ||||| |||||
Sbjct: 265 tggaaggctaagaatgggatagaggagatgtgtagggatctatggaattgggcaagcaat 206
Query: 328 aacccgtacgg 338
||||| |||||
Sbjct: 205 aacccctacgg 195
>gb|AV541983.1|AV541983 AV541983 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ175a04F 3', mRNA sequence
Length = 581
Score = 54.0 bits (27), Expect = 3e-005
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 268 tggaaggccaagtacgggatcgaggagatgtgcagagatctgtggaactgggcgagcaag 327
|||||||| ||| | ||||| ||||||||||| || ||||| ||||| ||||| |||||
Sbjct: 280 tggaaggctaagaatgggatagaggagatgtgtagggatctatggaattgggcaagcaat 221
Query: 328 aacccgtacgg 338
||||| |||||
Sbjct: 220 aacccctacgg 210
>gb|AY084615.1| Arabidopsis thaliana clone 11330 mRNA, complete sequence
Length = 1316
Score = 54.0 bits (27), Expect = 3e-005
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 268 tggaaggccaagtacgggatcgaggagatgtgcagagatctgtggaactgggcgagcaag 327
|||||||| ||| | ||||| ||||||||||| || ||||| ||||| ||||| |||||
Sbjct: 1014 tggaaggctaagaatgggatagaggagatgtgtagggatctatggaattgggcaagcaat 1073
Query: 328 aacccgtacgg 338
||||| |||||
Sbjct: 1074 aacccctacgg 1084
>gb|BT008539.1| Arabidopsis thaliana clone U51171 putative UDPglucose 4-epimerase
(At4g23920) mRNA, complete cds
Length = 1084
Score = 54.0 bits (27), Expect = 3e-005
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 268 tggaaggccaagtacgggatcgaggagatgtgcagagatctgtggaactgggcgagcaag 327
|||||||| ||| | ||||| ||||||||||| || ||||| ||||| ||||| |||||
Sbjct: 949 tggaaggctaagaatgggatagaggagatgtgtagggatctatggaattgggcaagcaat 1008
Query: 328 aacccgtacgg 338
||||| |||||
Sbjct: 1009 aacccctacgg 1019
>dbj|AK118722.1| Arabidopsis thaliana At4g23920 mRNA for putative UDPglucose
4-epimerase, complete cds, clone: RAFL21-04-N18
Length = 1393
Score = 54.0 bits (27), Expect = 3e-005
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 268 tggaaggccaagtacgggatcgaggagatgtgcagagatctgtggaactgggcgagcaag 327
|||||||| ||| | ||||| ||||||||||| || ||||| ||||| ||||| |||||
Sbjct: 1099 tggaaggctaagaatgggatagaggagatgtgtagggatctatggaattgggcaagcaat 1158
Query: 328 aacccgtacgg 338
||||| |||||
Sbjct: 1159 aacccctacgg 1169
>ref|NM_118524.2| Arabidopsis thaliana NAD binding / UDP-glucose 4-epimerase/ catalytic
AT4G23920 mRNA, complete cds
Length = 1390
Score = 54.0 bits (27), Expect = 3e-005
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 268 tggaaggccaagtacgggatcgaggagatgtgcagagatctgtggaactgggcgagcaag 327
|||||||| ||| | ||||| ||||||||||| || ||||| ||||| ||||| |||||
Sbjct: 1088 tggaaggctaagaatgggatagaggagatgtgtagggatctatggaattgggcaagcaat 1147
Query: 328 aacccgtacgg 338
||||| |||||
Sbjct: 1148 aacccctacgg 1158
>emb|CR770373.1| Arabidopsis thaliana T-DNA flanking sequence GK-386D04-018253,
genomic survey sequence
Length = 74
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 283 gggatcgaggagatgtgcagagatctgtggaactgggc 320
||||| ||||||||||| |||||| |||||||||||||
Sbjct: 13 gggattgaggagatgtgtagagatttgtggaactgggc 50
>emb|BX290909.1| Arabidopsis thaliana T-DNA flanking sequence GK-441B04-018209,
genomic survey sequence
Length = 614
Score = 48.1 bits (24), Expect = 0.002
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 283 gggatcgaggagatgtgcagagatctgtggaactgggcgagcaagaacccgtacgg 338
||||| ||||||||||| || ||||| ||||| ||||| ||||| ||||| |||||
Sbjct: 187 gggatagaggagatgtgtagggatctatggaattgggcaagcaataacccttacgg 242
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 48.1 bits (24), Expect = 0.002
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 283 gggatcgaggagatgtgcagagatctgtggaactgggcgagcaagaacccgtacgg 338
||||| ||||||||||| || ||||| ||||| ||||| ||||| ||||| |||||
Sbjct: 13934353 gggatagaggagatgtgtagggatctatggaattgggcaagcaataacccttacgg 13934408
Score = 42.1 bits (21), Expect = 0.12
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 292 gagatgtgcagagatctgtggaactgggc 320
|||||||||||||||| |||||| |||||
Sbjct: 4356011 gagatgtgcagagatcagtggaaatgggc 4355983
>gb|AC079028.11|AC079028 Arabidopsis thaliana chromosome 1 BAC T32O22 genomic sequence, complete
sequence
Length = 50349
Score = 48.1 bits (24), Expect = 0.002
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 283 gggatcgaggagatgtgcagagatctgtggaactgggcgagcaagaacccgtacgg 338
||||| ||||||||||| || ||||| ||||| ||||| ||||| ||||| |||||
Sbjct: 39346 gggatagaggagatgtgtagggatctatggaattgggcaagcaataacccttacgg 39291
>dbj|AP002059.1| Arabidopsis thaliana genomic DNA, chromosome 3, BAC clone: T20D4
Length = 16123
Score = 48.1 bits (24), Expect = 0.002
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 283 gggatcgaggagatgtgcagagatctgtggaactgggcgagcaagaacccgtacgg 338
||||| ||||||||||| || ||||| ||||| ||||| ||||| ||||| |||||
Sbjct: 9315 gggatagaggagatgtgtagggatctatggaattgggcaagcaataacccttacgg 9370
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 48.1 bits (24), Expect = 0.002
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 283 gggatcgaggagatgtgcagagatctgtggaactgggcgagcaagaacccgtacgg 338
||||| ||||||||||| || ||||| ||||| ||||| ||||| ||||| |||||
Sbjct: 10615212 gggatagaggagatgtgtagggatctatggaattgggcaagcaataacccttacgg 10615267
>emb|AL078468.1|ATT32A16 Arabidopsis thaliana DNA chromosome 4, BAC clone T32A16 (ESSA project)
Length = 89826
Score = 48.1 bits (24), Expect = 0.002
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 283 gggatcgaggagatgtgcagagatctgtggaactgggcgagcaagaacccgtacgg 338
||||| ||||||||||| || ||||| ||||| ||||| ||||| ||||| |||||
Sbjct: 43056 gggatagaggagatgtgtagggatctatggaattgggcaagcaataacccctacgg 43111
>emb|AL161560.2|ATCHRIV60 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 60
Length = 196677
Score = 48.1 bits (24), Expect = 0.002
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 283 gggatcgaggagatgtgcagagatctgtggaactgggcgagcaagaacccgtacgg 338
||||| ||||||||||| || ||||| ||||| ||||| ||||| ||||| |||||
Sbjct: 92962 gggatagaggagatgtgtagggatctatggaattgggcaagcaataacccctacgg 93017
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 48.1 bits (24), Expect = 0.002
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 283 gggatcgaggagatgtgcagagatctgtggaactgggcgagcaagaacccgtacgg 338
||||| ||||||||||| || ||||| ||||| ||||| ||||| ||||| |||||
Sbjct: 10691862 gggatagaggagatgtgtagggatctatggaattgggcaagcaataacccttacgg 10691917
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 48.1 bits (24), Expect = 0.002
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 283 gggatcgaggagatgtgcagagatctgtggaactgggcgagcaagaacccgtacgg 338
||||| ||||||||||| || ||||| ||||| ||||| ||||| ||||| |||||
Sbjct: 13926896 gggatagaggagatgtgtagggatctatggaattgggcaagcaataacccttacgg 13926951
Score = 42.1 bits (21), Expect = 0.12
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 292 gagatgtgcagagatctgtggaactgggc 320
|||||||||||||||| |||||||||||
Sbjct: 23431289 gagatgtgcagagatcaatggaactgggc 23431261
Score = 42.1 bits (21), Expect = 0.12
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 292 gagatgtgcagagatctgtggaactgggc 320
|||||||||||||||| |||||| |||||
Sbjct: 4356187 gagatgtgcagagatcagtggaaatgggc 4356159
>gb|AU230919.1|AU230919 AU230919 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-04-N18 3',
mRNA sequence
Length = 363
Score = 46.1 bits (23), Expect = 0.008
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 268 tggaaggccaagtacgggatcgaggagatgtgcagagatctgtggaactgggcgagcaag 327
|||||||| ||| | ||||| ||||||||||| || ||||| ||||| ||||| | |||
Sbjct: 280 tggaaggctaagaatgggatagaggagatgtgtagggatctatggaattgggcaaccaat 221
Query: 328 aacccgtacgg 338
||||| |||||
Sbjct: 220 aacccctacgg 210
>emb|BX841511.1|CNS09YH0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB11ZF11 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1136
Score = 46.1 bits (23), Expect = 0.008
Identities = 60/71 (84%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 268 tggaaggccaagtacgggatcgaggagatgtgcagagatctgtggaactgggcgagcaag 327
|||||||| ||| | ||||| ||||||||||| || ||||| ||||| ||||| |||||
Sbjct: 997 tggaaggctaagaatgggatagaggagatgtgtagggatctatggaattgggc-agcaat 1055
Query: 328 aacccgtacgg 338
||||| |||||
Sbjct: 1056 aacccctacgg 1066
>gb|B20556.1|B20556 F3F19-T7.1 IGF Arabidopsis thaliana genomic clone F3F19, DNA
sequence
Length = 816
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 550 atagagggaggaggagggggg 570
|||||||||||||||||||||
Sbjct: 813 atagagggaggaggagggggg 793
>gb|CL508148.1|CL508148 SAIL_792_G03.v3 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_792_G03.v3, DNA sequence
Length = 958
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 551 tagagggaggaggaggggggt 571
|||||||||||||||||||||
Sbjct: 791 tagagggaggaggaggggggt 771
>gb|F13966.1|F13966 ATTS4888 Versailles-VB Arabidopsis thaliana cDNA clone VBVVG02 3'
similar to UDP-GLUCOSE 4-EPIMERASE, mRNA sequence
Length = 414
Score = 42.1 bits (21), Expect = 0.12
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 292 gagatgtgcagagatctgtggaactgggc 320
|||||||||||||||| |||||||||||
Sbjct: 209 gagatgtgcagagatcaatggaactgggc 181
>gb|AI100184.1|AI100184 34559 Lambda-PRL2 Arabidopsis thaliana cDNA clone 108G21XP 3', mRNA
sequence
Length = 426
Score = 42.1 bits (21), Expect = 0.12
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 292 gagatgtgcagagatctgtggaactgggc 320
|||||||||||||||| |||||| |||||
Sbjct: 212 gagatgtgcagagatcagtggaaatgggc 240
>gb|AI998807.1|AI998807 701546969 A. thaliana, Columbia Col-0, rosette-2 Arabidopsis
thaliana cDNA clone 701546969, mRNA sequence
Length = 532
Score = 42.1 bits (21), Expect = 0.12
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 292 gagatgtgcagagatctgtggaactgggc 320
|||||||||||||||| |||||| |||||
Sbjct: 204 gagatgtgcagagatcagtggaaatgggc 176
>gb|AU229988.1|AU229988 AU229988 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-09-L10 3',
mRNA sequence
Length = 402
Score = 42.1 bits (21), Expect = 0.12
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 292 gagatgtgcagagatctgtggaactgggc 320
|||||||||||||||| |||||||||||
Sbjct: 215 gagatgtgcagagatcaatggaactgggc 187
>gb|AV782794.1|AV782794 AV782794 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-01-J17 3',
mRNA sequence
Length = 665
Score = 42.1 bits (21), Expect = 0.12
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 292 gagatgtgcagagatctgtggaactgggc 320
|||||||||||||||| |||||| |||||
Sbjct: 219 gagatgtgcagagatcagtggaaatgggc 191
>gb|AV783652.1|AV783652 AV783652 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-11-O04 3',
mRNA sequence
Length = 721
Score = 42.1 bits (21), Expect = 0.12
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 292 gagatgtgcagagatctgtggaactgggc 320
|||||||||||||||| |||||| |||||
Sbjct: 221 gagatgtgcagagatcagtggaaatgggc 193
>gb|AV789111.1|AV789111 AV789111 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-82-E14 3',
mRNA sequence
Length = 420
Score = 42.1 bits (21), Expect = 0.12
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 292 gagatgtgcagagatctgtggaactgggc 320
|||||||||||||||| |||||| |||||
Sbjct: 216 gagatgtgcagagatcagtggaaatgggc 188
>gb|AV799803.1|AV799803 AV799803 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-21-I17 3',
mRNA sequence
Length = 408
Score = 42.1 bits (21), Expect = 0.12
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 292 gagatgtgcagagatctgtggaactgggc 320
|||||||||||||||| |||||| |||||
Sbjct: 220 gagatgtgcagagatcagtggaaatgggc 192
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 276,900
Number of Sequences: 1013581
Number of extensions: 276900
Number of successful extensions: 19585
Number of sequences better than 0.5: 93
Number of HSP's better than 0.5 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18157
Number of HSP's gapped (non-prelim): 1427
length of query: 691
length of database: 908,940,872
effective HSP length: 20
effective length of query: 671
effective length of database: 888,669,252
effective search space: 596297068092
effective search space used: 596297068092
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)