BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4548790.2.1
(1044 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK175875.1| Arabidopsis thaliana mRNA for expansin-like... 96 1e-017
ref|NM_115407.2| Arabidopsis thaliana ATEXPA16 (ARABIDOPSIS... 96 1e-017
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 78 3e-012
emb|AL132975.1|ATT22E16 Arabidopsis thaliana DNA chromosome... 78 3e-012
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 78 3e-012
gb|AF083687.1| Arabidopsis thaliana clone sps111 unknown mRNA 74 5e-011
gb|CW798682.1|CW798682 WiscDsLox430B01 Arabidopsis thaliana... 62 2e-007
gb|AV785456.1|AV785456 AV785456 RAFL6 Arabidopsis thaliana ... 62 2e-007
gb|CK119406.1|CK119406 212o22.p1 AtM1 Arabidopsis thaliana ... 62 2e-007
gb|BP840395.1|BP840395 BP840395 RAFL19 Arabidopsis thaliana... 62 2e-007
gb|AY090368.1| Arabidopsis thaliana At2g37640/F13M22.14 mRN... 62 2e-007
gb|AY122898.1| Arabidopsis thaliana At2g37640/F13M22.14 mRN... 62 2e-007
emb|AX651740.1| Sequence 581 from Patent WO03000898 62 2e-007
gb|AC004684.3| Arabidopsis thaliana chromosome 2 clone F13M... 62 2e-007
ref|NM_129320.3| Arabidopsis thaliana ATEXPA3 (ARABIDOPSIS ... 62 2e-007
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 62 2e-007
emb|BX286597.1| Arabidopsis thaliana T-DNA flanking sequenc... 56 1e-005
dbj|AB014459.1| Arabidopsis thaliana mRNA for obtusifoliol ... 56 1e-005
emb|AL936831.1| Arabidopsis thaliana T-DNA flanking sequenc... 54 5e-005
gb|BX840109.1|BX840109 BX840109 Arabidopsis thaliana Hormon... 54 5e-005
gb|BP576308.1|BP576308 BP576308 RAFL14 Arabidopsis thaliana... 54 5e-005
gb|BP626962.1|BP626962 BP626962 RAFL17 Arabidopsis thaliana... 54 5e-005
gb|CB254578.1|CB254578 65-E018437-019-009-A17-T7R MPIZ-ADIS... 54 5e-005
gb|AF410277.1|AF410277 Arabidopsis thaliana At2g39700/F17A1... 54 5e-005
gb|AY062683.1| Arabidopsis thaliana putative expansin (At2g... 54 5e-005
gb|AY093338.1| Arabidopsis thaliana putative expansin (At2g... 54 5e-005
emb|AX505394.1| Sequence 89 from Patent WO0216655 54 5e-005
gb|AY085719.1| Arabidopsis thaliana clone 17353 mRNA, compl... 54 5e-005
gb|AC003674.3| Arabidopsis thaliana chromosome 2 clone F17A... 54 5e-005
emb|BX818782.1|CNS0A82M Arabidopsis thaliana Full-length cD... 54 5e-005
emb|BX821366.1|CNS0A97J Arabidopsis thaliana Full-length cD... 54 5e-005
emb|BX822037.1|CNS0A93W Arabidopsis thaliana Full-length cD... 54 5e-005
ref|NM_129526.2| Arabidopsis thaliana ATEXPA4 (ARABIDOPSIS ... 54 5e-005
gb|AA042248.1|AA042248 24569 CD4-13 Arabidopsis thaliana cD... 48 0.003
gb|CF651894.1|CF651894 21-L020525-066-003-J05-SP6P MPIZ-ADI... 48 0.003
gb|BP659501.1|BP659501 BP659501 RAFL19 Arabidopsis thaliana... 48 0.003
gb|AY054586.1| Arabidopsis thaliana expansin precursor-like... 48 0.003
gb|AY064685.1| Arabidopsis thaliana expansin precursor-like... 48 0.003
gb|AY086085.1| Arabidopsis thaliana clone 21205 mRNA, compl... 48 0.003
emb|BX821634.1|CNS0A9AF Arabidopsis thaliana Full-length cD... 48 0.003
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 48 0.003
emb|AL162874.1|ATT1E22 Arabidopsis thaliana DNA chromosome ... 48 0.003
ref|NM_120304.2| Arabidopsis thaliana ATEXPA9 (ARABIDOPSIS ... 48 0.003
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 48 0.003
gb|AV824246.1|AV824246 AV824246 RAFL6 Arabidopsis thaliana ... 46 0.012
emb|BX818958.1|CNS0A9YC Arabidopsis thaliana Full-length cD... 44 0.048
gb|U87586.1|ATU87586 Arabidopsis thaliana decoy mRNA, compl... 42 0.19
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 42 0.19
gb|AY052247.1| Arabidopsis thaliana At1g26770/T24P13_14 mRN... 42 0.19
gb|AY060512.1| Arabidopsis thaliana At1g26770/T24P13_14 mRN... 42 0.19
gb|AY085242.1| Arabidopsis thaliana clone 14132 mRNA, compl... 42 0.19
gb|AC006535.7|AC006535 Genomic sequence for Arabidopsis tha... 42 0.19
emb|BX816448.1|CNS0ADWQ Arabidopsis thaliana Full-length cD... 42 0.19
gb|AF229437.1| Arabidopsis thaliana expansin 10 (EXPA10) mR... 42 0.19
gb|AF229431.1| Arabidopsis thaliana expansin 10 (EXPA10) ge... 42 0.19
ref|NM_102440.3| Arabidopsis thaliana ATEXPA10 (ARABIDOPSIS... 42 0.19
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 42 0.19
>dbj|AK175875.1| Arabidopsis thaliana mRNA for expansin-like protein, complete cds,
clone: RAFL22-51-G11
Length = 1115
Score = 95.6 bits (48), Expect = 1e-017
Identities = 153/188 (81%)
Strand = Plus / Plus
Query: 299 ggctggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatc 358
||||||||||||||||| ||| | || |||||||||||||||||| | |||||| | |||
Sbjct: 453 ggctggtgcaacccgccacgctctcatttcgacctcgccatgcccgttttcctcaagatc 512
Query: 359 gccgagtaccgcgccggcatcgtgcccgtctcctaccgccgggtgccgtgccgcaagtcc 418
|| ||||| || |||||||| || ||| |||| |||||| ||||| | || | |||
Sbjct: 513 gctgagtatcgtgccggcattgtccccatctcttaccgcagggtggcatgtaggaagagt 572
Query: 419 ggcggggtgcggttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaac 478
|| ||| | ||||||| |||||||| ||| ||||||||| |||||||||| ||||||
Sbjct: 573 ggagggataaggttcacgatcaacggtcaccgttacttcaacttggtgctgattacgaac 632
Query: 479 gtggccgg 486
||||||||
Sbjct: 633 gtggccgg 640
Score = 44.1 bits (22), Expect = 0.048
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 548 aggaactggggccagaactggcagtc 573
||||||||||| ||||||||||||||
Sbjct: 702 aggaactggggacagaactggcagtc 727
>ref|NM_115407.2| Arabidopsis thaliana ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)
AT3G55500 (ATEXPA16) mRNA, complete cds
Length = 827
Score = 95.6 bits (48), Expect = 1e-017
Identities = 153/188 (81%)
Strand = Plus / Plus
Query: 299 ggctggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatc 358
||||||||||||||||| ||| | || |||||||||||||||||| | |||||| | |||
Sbjct: 417 ggctggtgcaacccgccacgctctcatttcgacctcgccatgcccgttttcctcaagatc 476
Query: 359 gccgagtaccgcgccggcatcgtgcccgtctcctaccgccgggtgccgtgccgcaagtcc 418
|| ||||| || |||||||| || ||| |||| |||||| ||||| | || | |||
Sbjct: 477 gctgagtatcgtgccggcattgtccccatctcttaccgcagggtggcatgtaggaagagt 536
Query: 419 ggcggggtgcggttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaac 478
|| ||| | ||||||| |||||||| ||| ||||||||| |||||||||| ||||||
Sbjct: 537 ggagggataaggttcacgatcaacggtcaccgttacttcaacttggtgctgattacgaac 596
Query: 479 gtggccgg 486
||||||||
Sbjct: 597 gtggccgg 604
Score = 44.1 bits (22), Expect = 0.048
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 548 aggaactggggccagaactggcagtc 573
||||||||||| ||||||||||||||
Sbjct: 666 aggaactggggacagaactggcagtc 691
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 77.8 bits (39), Expect = 3e-012
Identities = 84/99 (84%)
Strand = Plus / Minus
Query: 299 ggctggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatc 358
||||||||||||||||| ||| | || |||||||||||||||||| | |||||| | |||
Sbjct: 20539052 ggctggtgcaacccgccacgctctcatttcgacctcgccatgcccgttttcctcaagatc 20538993
Query: 359 gccgagtaccgcgccggcatcgtgcccgtctcctaccgc 397
|| ||||| || |||||||| || ||| |||| ||||||
Sbjct: 20538992 gctgagtatcgtgccggcattgtccccatctcttaccgc 20538954
Score = 60.0 bits (30), Expect = 8e-007
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 429 ggttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtggccgg 486
||||||| |||||||| ||| ||||||||| |||||||||| ||||||||||||||
Sbjct: 20538805 ggttcacgatcaacggtcaccgttacttcaacttggtgctgattacgaacgtggccgg 20538748
Score = 44.1 bits (22), Expect = 0.048
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 548 aggaactggggccagaactggcagtc 573
||||||||||| ||||||||||||||
Sbjct: 20538686 aggaactggggacagaactggcagtc 20538661
>emb|AL132975.1|ATT22E16 Arabidopsis thaliana DNA chromosome 3, BAC clone T22E16
Length = 103240
Score = 77.8 bits (39), Expect = 3e-012
Identities = 84/99 (84%)
Strand = Plus / Minus
Query: 299 ggctggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatc 358
||||||||||||||||| ||| | || |||||||||||||||||| | |||||| | |||
Sbjct: 58076 ggctggtgcaacccgccacgctctcatttcgacctcgccatgcccgttttcctcaagatc 58017
Query: 359 gccgagtaccgcgccggcatcgtgcccgtctcctaccgc 397
|| ||||| || |||||||| || ||| |||| ||||||
Sbjct: 58016 gctgagtatcgtgccggcattgtccccatctcttaccgc 57978
Score = 60.0 bits (30), Expect = 8e-007
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 429 ggttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtggccgg 486
||||||| |||||||| ||| ||||||||| |||||||||| ||||||||||||||
Sbjct: 57829 ggttcacgatcaacggtcaccgttacttcaacttggtgctgattacgaacgtggccgg 57772
Score = 44.1 bits (22), Expect = 0.048
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 548 aggaactggggccagaactggcagtc 573
||||||||||| ||||||||||||||
Sbjct: 57710 aggaactggggacagaactggcagtc 57685
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 77.8 bits (39), Expect = 3e-012
Identities = 84/99 (84%)
Strand = Plus / Minus
Query: 299 ggctggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatc 358
||||||||||||||||| ||| | || |||||||||||||||||| | |||||| | |||
Sbjct: 20586579 ggctggtgcaacccgccacgctctcatttcgacctcgccatgcccgttttcctcaagatc 20586520
Query: 359 gccgagtaccgcgccggcatcgtgcccgtctcctaccgc 397
|| ||||| || |||||||| || ||| |||| ||||||
Sbjct: 20586519 gctgagtatcgtgccggcattgtccccatctcttaccgc 20586481
Score = 60.0 bits (30), Expect = 8e-007
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 429 ggttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtggccgg 486
||||||| |||||||| ||| ||||||||| |||||||||| ||||||||||||||
Sbjct: 20586332 ggttcacgatcaacggtcaccgttacttcaacttggtgctgattacgaacgtggccgg 20586275
Score = 44.1 bits (22), Expect = 0.048
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 548 aggaactggggccagaactggcagtc 573
||||||||||| ||||||||||||||
Sbjct: 20586213 aggaactggggacagaactggcagtc 20586188
>gb|AF083687.1| Arabidopsis thaliana clone sps111 unknown mRNA
Length = 638
Score = 73.8 bits (37), Expect = 5e-011
Identities = 88/105 (83%)
Strand = Plus / Plus
Query: 299 ggctggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttcctccacatc 358
||||||||||||||||| ||| | || |||||||||||||||||| | |||||| | |||
Sbjct: 417 ggctggtgcaacccgccacgctctcatttcgacctcgccatgcccgttttcctcaagatc 476
Query: 359 gccgagtaccgcgccggcatcgtgcccgtctcctaccgccgggtg 403
|| || || || |||||||| || ||| |||| |||||| |||||
Sbjct: 477 gctgaatatcgtgccggcattgtccccatctcttaccgcagggtg 521
>gb|CW798682.1|CW798682 WiscDsLox430B01 Arabidopsis thaliana T-DNA insertion flanking
sequences Arabidopsis thaliana genomic, DNA sequence
Length = 829
Score = 61.9 bits (31), Expect = 2e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 549 ggaactggggccagaactggcagtccaacgccatcctcgtcggccaggcgctctccttcc 608
|||||||||| ||||||||||| ||||||||| | ||| ||||||| | ||||| ||||
Sbjct: 398 ggaactggggacagaactggcaatccaacgccgttctcatcggccaatcactctctttcc 457
Query: 609 gcgtcaccgcc 619
| |||||||||
Sbjct: 458 gagtcaccgcc 468
>gb|AV785456.1|AV785456 AV785456 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-16-I08 3',
mRNA sequence
Length = 437
Score = 61.9 bits (31), Expect = 2e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 549 ggaactggggccagaactggcagtccaacgccatcctcgtcggccaggcgctctccttcc 608
|||||||||| ||||||||||| ||||||||| | ||| ||||||| | ||||| ||||
Sbjct: 430 ggaactggggacagaactggcaatccaacgccgttctcatcggccaatcactctctttcc 371
Query: 609 gcgtcaccgcc 619
| |||||||||
Sbjct: 370 gagtcaccgcc 360
>gb|CK119406.1|CK119406 212o22.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011O22212
5-PRIME, mRNA sequence
Length = 699
Score = 61.9 bits (31), Expect = 2e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 549 ggaactggggccagaactggcagtccaacgccatcctcgtcggccaggcgctctccttcc 608
|||||||||| ||||||||||| ||||||||| | ||| ||||||| | ||||| ||||
Sbjct: 496 ggaactggggacagaactggcaatccaacgccgttctcatcggccaatcactctctttcc 555
Query: 609 gcgtcaccgcc 619
| |||||||||
Sbjct: 556 gagtcaccgcc 566
Score = 46.1 bits (23), Expect = 0.012
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 290 gacgacggcggctggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttc 349
|||||||| || |||||||| ||||| ||| ||| || || ||||||||||| ||||||
Sbjct: 237 gacgacggagggtggtgcaatccgccgcgcgagcattttgatctcgccatgcctatgttc 296
Query: 350 ctc 352
|||
Sbjct: 297 ctc 299
>gb|BP840395.1|BP840395 BP840395 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-30-B10 5',
mRNA sequence
Length = 384
Score = 61.9 bits (31), Expect = 2e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 549 ggaactggggccagaactggcagtccaacgccatcctcgtcggccaggcgctctccttcc 608
|||||||||| ||||||||||| ||||||||| | ||| ||||||| | ||||| ||||
Sbjct: 236 ggaactggggacagaactggcaatccaacgccgttctcatcggccaatcactctctttcc 295
Query: 609 gcgtcaccgcc 619
| |||||||||
Sbjct: 296 gagtcaccgcc 306
>gb|AY090368.1| Arabidopsis thaliana At2g37640/F13M22.14 mRNA, complete cds
Length = 1099
Score = 61.9 bits (31), Expect = 2e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 549 ggaactggggccagaactggcagtccaacgccatcctcgtcggccaggcgctctccttcc 608
|||||||||| ||||||||||| ||||||||| | ||| ||||||| | ||||| ||||
Sbjct: 670 ggaactggggacagaactggcaatccaacgccgttctcatcggccaatcactctctttcc 729
Query: 609 gcgtcaccgcc 619
| |||||||||
Sbjct: 730 gagtcaccgcc 740
Score = 46.1 bits (23), Expect = 0.012
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 290 gacgacggcggctggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttc 349
|||||||| || |||||||| ||||| ||| ||| || || ||||||||||| ||||||
Sbjct: 411 gacgacggagggtggtgcaatccgccgcgcgagcattttgatctcgccatgcctatgttc 470
Query: 350 ctc 352
|||
Sbjct: 471 ctc 473
>gb|AY122898.1| Arabidopsis thaliana At2g37640/F13M22.14 mRNA, complete cds
Length = 789
Score = 61.9 bits (31), Expect = 2e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 549 ggaactggggccagaactggcagtccaacgccatcctcgtcggccaggcgctctccttcc 608
|||||||||| ||||||||||| ||||||||| | ||| ||||||| | ||||| ||||
Sbjct: 629 ggaactggggacagaactggcaatccaacgccgttctcatcggccaatcactctctttcc 688
Query: 609 gcgtcaccgcc 619
| |||||||||
Sbjct: 689 gagtcaccgcc 699
Score = 46.1 bits (23), Expect = 0.012
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 290 gacgacggcggctggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttc 349
|||||||| || |||||||| ||||| ||| ||| || || ||||||||||| ||||||
Sbjct: 370 gacgacggagggtggtgcaatccgccgcgcgagcattttgatctcgccatgcctatgttc 429
Query: 350 ctc 352
|||
Sbjct: 430 ctc 432
>emb|AX651740.1| Sequence 581 from Patent WO03000898
Length = 789
Score = 61.9 bits (31), Expect = 2e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 549 ggaactggggccagaactggcagtccaacgccatcctcgtcggccaggcgctctccttcc 608
|||||||||| ||||||||||| ||||||||| | ||| ||||||| | ||||| ||||
Sbjct: 629 ggaactggggacagaactggcaatccaacgccgttctcatcggccaatcactctctttcc 688
Query: 609 gcgtcaccgcc 619
| |||||||||
Sbjct: 689 gagtcaccgcc 699
Score = 46.1 bits (23), Expect = 0.012
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 290 gacgacggcggctggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttc 349
|||||||| || |||||||| ||||| ||| ||| || || ||||||||||| ||||||
Sbjct: 370 gacgacggagggtggtgcaatccgccgcgcgagcattttgatctcgccatgcctatgttc 429
Query: 350 ctc 352
|||
Sbjct: 430 ctc 432
>gb|AC004684.3| Arabidopsis thaliana chromosome 2 clone F13M22 map ve018, complete
sequence
Length = 93845
Score = 61.9 bits (31), Expect = 2e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 549 ggaactggggccagaactggcagtccaacgccatcctcgtcggccaggcgctctccttcc 608
|||||||||| ||||||||||| ||||||||| | ||| ||||||| | ||||| ||||
Sbjct: 44303 ggaactggggacagaactggcaatccaacgccgttctcatcggccaatcactctctttcc 44244
Query: 609 gcgtcaccgcc 619
| |||||||||
Sbjct: 44243 gagtcaccgcc 44233
Score = 46.1 bits (23), Expect = 0.012
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 290 gacgacggcggctggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttc 349
|||||||| || |||||||| ||||| ||| ||| || || ||||||||||| ||||||
Sbjct: 45349 gacgacggagggtggtgcaatccgccgcgcgagcattttgatctcgccatgcctatgttc 45290
Query: 350 ctc 352
|||
Sbjct: 45289 ctc 45287
>ref|NM_129320.3| Arabidopsis thaliana ATEXPA3 (ARABIDOPSIS THALIANA EXPANSIN A3)
AT2G37640 (ATEXPA3) mRNA, complete cds
Length = 1202
Score = 61.9 bits (31), Expect = 2e-007
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 549 ggaactggggccagaactggcagtccaacgccatcctcgtcggccaggcgctctccttcc 608
|||||||||| ||||||||||| ||||||||| | ||| ||||||| | ||||| ||||
Sbjct: 670 ggaactggggacagaactggcaatccaacgccgttctcatcggccaatcactctctttcc 729
Query: 609 gcgtcaccgcc 619
| |||||||||
Sbjct: 730 gagtcaccgcc 740
Score = 46.1 bits (23), Expect = 0.012
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 290 gacgacggcggctggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttc 349
|||||||| || |||||||| ||||| ||| ||| || || ||||||||||| ||||||
Sbjct: 411 gacgacggagggtggtgcaatccgccgcgcgagcattttgatctcgccatgcctatgttc 470
Query: 350 ctc 352
|||
Sbjct: 471 ctc 473
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 61.9 bits (31), Expect = 2e-007
Identities = 61/71 (85%)
Strand = Plus / Minus
Query: 549 ggaactggggccagaactggcagtccaacgccatcctcgtcggccaggcgctctccttcc 608
|||||||||| ||||||||||| ||||||||| | ||| ||||||| | ||||| ||||
Sbjct: 15795315 ggaactggggacagaactggcaatccaacgccgttctcatcggccaatcactctctttcc 15795256
Query: 609 gcgtcaccgcc 619
| |||||||||
Sbjct: 15795255 gagtcaccgcc 15795245
Score = 54.0 bits (27), Expect = 5e-005
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 429 ggttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtggc 483
|||||||||||||||| ||| ||||||||| |||| |||||||| ||||||||
Sbjct: 16551604 ggttcacaatcaacggtcaccgttacttcaacttggttctgatcactaacgtggc 16551550
Score = 46.1 bits (23), Expect = 0.012
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 290 gacgacggcggctggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttc 349
|||||||| || |||||||| ||||| ||| ||| || || ||||||||||| ||||||
Sbjct: 15796361 gacgacggagggtggtgcaatccgccgcgcgagcattttgatctcgccatgcctatgttc 15796302
Query: 350 ctc 352
|||
Sbjct: 15796301 ctc 15796299
>emb|BX286597.1| Arabidopsis thaliana T-DNA flanking sequence GK-392B04-018265,
genomic survey sequence
Length = 326
Score = 56.0 bits (28), Expect = 1e-005
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 549 ggaactggggccagaactggcagtccaacgccatcctcgtcggccaggcgctctccttcc 608
|||||||||| ||||||||||| ||||||||| | ||| ||||||| | ||||| |||
Sbjct: 193 ggaactggggacagaactggcaatccaacgccgttctcatcggccaatcactctctntcc 134
Query: 609 gcgtcaccgcc 619
| |||||||||
Sbjct: 133 gagtcaccgcc 123
>dbj|AB014459.1| Arabidopsis thaliana mRNA for obtusifoliol 14-demethylase,
complete cds
Length = 1899
Score = 56.0 bits (28), Expect = 1e-005
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 gatccgaattcgcggccgcgtcgacgcg 28
||||||||||||||||||||||||||||
Sbjct: 48 gatccgaattcgcggccgcgtcgacgcg 75
>emb|AL936831.1| Arabidopsis thaliana T-DNA flanking sequence GK-061D02-016089,
genomic survey sequence
Length = 170
Score = 54.0 bits (27), Expect = 5e-005
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 429 ggttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtggc 483
|||||||||||||||| ||| ||||||||| |||| |||||||| ||||||||
Sbjct: 65 ggttcacaatcaacggtcaccgttacttcaacttggttctgatcactaacgtggc 11
>gb|BX840109.1|BX840109 BX840109 Arabidopsis thaliana Hormone Treated Callus Col-0
Arabidopsis thaliana cDNA clone GSLTPGH40ZF08 5PRIM,
mRNA sequence
Length = 975
Score = 54.0 bits (27), Expect = 5e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 429 ggttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtggc 483
|||||||||||||||| ||| ||||||||| |||| |||||||| ||||||||
Sbjct: 620 ggttcacaatcaacggtcaccgttacttcaacttggttctgatcactaacgtggc 674
>gb|BP576308.1|BP576308 BP576308 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-91-I18 3',
mRNA sequence
Length = 417
Score = 54.0 bits (27), Expect = 5e-005
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 429 ggttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtggc 483
|||||||||||||||| ||| ||||||||| |||| |||||||| ||||||||
Sbjct: 405 ggttcacaatcaacggtcaccgttacttcaacttggttctgatcactaacgtggc 351
>gb|BP626962.1|BP626962 BP626962 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-49-G19 3',
mRNA sequence
Length = 436
Score = 54.0 bits (27), Expect = 5e-005
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 549 ggaactggggccagaactggcagtccaacgccatcctcgtcggccaggcgctctccttcc 608
|||||||||| ||||||||||| |||||| || | ||| ||||||| | ||||| ||||
Sbjct: 250 ggaactggggacagaactggcaatccaaccccgttctcatcggccaatcactctctttcc 191
Query: 609 gcgtcaccgcc 619
| |||||||||
Sbjct: 190 gagtcaccgcc 180
>gb|CB254578.1|CB254578 65-E018437-019-009-A17-T7R MPIZ-ADIS-019 Arabidopsis thaliana cDNA
clone MPIZp768A179Q 5-PRIME, mRNA sequence
Length = 691
Score = 54.0 bits (27), Expect = 5e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 429 ggttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtggc 483
|||||||||||||||| ||| ||||||||| |||| |||||||| ||||||||
Sbjct: 630 ggttcacaatcaacggtcaccgttacttcaacttggttctgatcactaacgtggc 684
Score = 44.1 bits (22), Expect = 0.048
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 368 cgcgccggcatcgtgcccgtctcctaccgccgggtgcc 405
||||||||||| || |||||||| |||||| |||||||
Sbjct: 569 cgcgccggcattgtccccgtctcataccgcagggtgcc 606
>gb|AF410277.1|AF410277 Arabidopsis thaliana At2g39700/F17A14.7 mRNA, complete cds
Length = 1306
Score = 54.0 bits (27), Expect = 5e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 429 ggttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtggc 483
|||||||||||||||| ||| ||||||||| |||| |||||||| ||||||||
Sbjct: 644 ggttcacaatcaacggtcaccgttacttcaacttggttctgatcactaacgtggc 698
>gb|AY062683.1| Arabidopsis thaliana putative expansin (At2g39700; F17A14.7) mRNA,
complete cds
Length = 1318
Score = 54.0 bits (27), Expect = 5e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 429 ggttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtggc 483
|||||||||||||||| ||| ||||||||| |||| |||||||| ||||||||
Sbjct: 641 ggttcacaatcaacggtcaccgttacttcaacttggttctgatcactaacgtggc 695
>gb|AY093338.1| Arabidopsis thaliana putative expansin (At2g39700) mRNA, complete
cds
Length = 871
Score = 54.0 bits (27), Expect = 5e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 429 ggttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtggc 483
|||||||||||||||| ||| ||||||||| |||| |||||||| ||||||||
Sbjct: 494 ggttcacaatcaacggtcaccgttacttcaacttggttctgatcactaacgtggc 548
>emb|AX505394.1| Sequence 89 from Patent WO0216655
Length = 774
Score = 54.0 bits (27), Expect = 5e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 429 ggttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtggc 483
|||||||||||||||| ||| ||||||||| |||| |||||||| ||||||||
Sbjct: 494 ggttcacaatcaacggtcaccgttacttcaacttggttctgatcactaacgtggc 548
>gb|AY085719.1| Arabidopsis thaliana clone 17353 mRNA, complete sequence
Length = 1319
Score = 54.0 bits (27), Expect = 5e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 429 ggttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtggc 483
|||||||||||||||| ||| ||||||||| |||| |||||||| ||||||||
Sbjct: 641 ggttcacaatcaacggtcaccgttacttcaacttggttctgatcactaacgtggc 695
>gb|AC003674.3| Arabidopsis thaliana chromosome 2 clone F17A14 map CIC10A06, complete
sequence
Length = 39141
Score = 54.0 bits (27), Expect = 5e-005
Identities = 48/55 (87%)
Strand = Plus / Minus
Query: 429 ggttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtggc 483
|||||||||||||||| ||| ||||||||| |||| |||||||| ||||||||
Sbjct: 19995 ggttcacaatcaacggtcaccgttacttcaacttggttctgatcactaacgtggc 19941
>emb|BX818782.1|CNS0A82M Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB13ZA11 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1277
Score = 54.0 bits (27), Expect = 5e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 429 ggttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtggc 483
|||||||||||||||| ||| ||||||||| |||| |||||||| ||||||||
Sbjct: 621 ggttcacaatcaacggtcaccgttacttcaacttggttctgatcactaacgtggc 675
>emb|BX821366.1|CNS0A97J Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL36ZG03 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 1245
Score = 54.0 bits (27), Expect = 5e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 429 ggttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtggc 483
|||||||||||||||| ||| ||||||||| |||| |||||||| ||||||||
Sbjct: 620 ggttcacaatcaacggtcaccgttacttcaacttggttctgatcactaacgtggc 674
>emb|BX822037.1|CNS0A93W Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL93ZF12 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 996
Score = 54.0 bits (27), Expect = 5e-005
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 549 ggaactggggccagaactggcagtccaacgccatcctcgtcggccaggcgctctccttcc 608
|||||||||| ||||||||||| ||||||||| | ||| ||||||| | ||||| ||||
Sbjct: 657 ggaactggggacagaactggcaatccaacgccgttctcatcggccaatcactctctttcc 716
Query: 609 gcgtcaccgcc 619
| || ||||||
Sbjct: 717 gagtaaccgcc 727
>ref|NM_129526.2| Arabidopsis thaliana ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4)
AT2G39700 (ATEXPA4) mRNA, complete cds
Length = 1338
Score = 54.0 bits (27), Expect = 5e-005
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 429 ggttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtggc 483
|||||||||||||||| ||| ||||||||| |||| |||||||| ||||||||
Sbjct: 644 ggttcacaatcaacggtcaccgttacttcaacttggttctgatcactaacgtggc 698
>gb|AA042248.1|AA042248 24569 CD4-13 Arabidopsis thaliana cDNA clone E4H8T7, mRNA sequence
Length = 558
Score = 48.1 bits (24), Expect = 0.003
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 431 ttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtggccgg 486
||||||||||| || ||| |||||||||| |||||||| |||| ||||| |||||
Sbjct: 51 ttcacaatcaatggattcaagtacttcaacttggtgctggtcactaacgtagccgg 106
>gb|CF651894.1|CF651894 21-L020525-066-003-J05-SP6P MPIZ-ADIS-066 Arabidopsis thaliana cDNA
clone MPIZp2001J053Q 5-PRIME, mRNA sequence
Length = 723
Score = 48.1 bits (24), Expect = 0.003
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 431 ttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtggccgg 486
||||||||||| || ||| |||||||||| |||||||| |||| ||||| |||||
Sbjct: 52 ttcacaatcaatggattcaagtacttcaacttggtgctggtcactaacgtagccgg 107
>gb|BP659501.1|BP659501 BP659501 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-39-K03 3',
mRNA sequence
Length = 404
Score = 48.1 bits (24), Expect = 0.003
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 549 ggaactggggccagaactggcagtccaacgccatcctcgtcggccaggcgctctccttcc 608
||||||||| ||||||||||| ||||||||| | ||| ||||||| | ||||| ||||
Sbjct: 346 ggaactgggcacagaactggcaatccaacgccgttctcatcggccaatcactctctttcc 287
Query: 609 gcgtcacc 616
| ||||||
Sbjct: 286 gagtcacc 279
>gb|AY054586.1| Arabidopsis thaliana expansin precursor-like protein (At5g02260;
T1E22_20) mRNA, complete cds
Length = 1205
Score = 48.1 bits (24), Expect = 0.003
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 431 ttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtggccgg 486
||||||||||| || ||| |||||||||| |||||||| |||| ||||| |||||
Sbjct: 565 ttcacaatcaatggattcaagtacttcaacttggtgctggtcactaacgtagccgg 620
>gb|AY064685.1| Arabidopsis thaliana expansin precursor-like protein (At5g02260;
T1E22_20) mRNA, complete cds
Length = 905
Score = 48.1 bits (24), Expect = 0.003
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 431 ttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtggccgg 486
||||||||||| || ||| |||||||||| |||||||| |||| ||||| |||||
Sbjct: 499 ttcacaatcaatggattcaagtacttcaacttggtgctggtcactaacgtagccgg 554
>gb|AY086085.1| Arabidopsis thaliana clone 21205 mRNA, complete sequence
Length = 1230
Score = 48.1 bits (24), Expect = 0.003
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 431 ttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtggccgg 486
||||||||||| || ||| |||||||||| |||||||| |||| ||||| |||||
Sbjct: 565 ttcacaatcaatggattcaagtacttcaacttggtgctggtcactaacgtagccgg 620
>emb|BX821634.1|CNS0A9AF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL5ZD10 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 986
Score = 48.1 bits (24), Expect = 0.003
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 552 actggggccagaactggcagtccaacgccatcctcgtcggccaggcgctctccttccgcg 611
||||||| ||||||||||| ||||||||| | ||| ||||||| | ||||| ||||| |
Sbjct: 657 actggggacagaactggcaatccaacgccgttctcatcggccaatcactctctttccgag 716
Query: 612 tcaccgcc 619
| ||||||
Sbjct: 717 tgaccgcc 724
Score = 46.1 bits (23), Expect = 0.012
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 290 gacgacggcggctggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttc 349
|||||||| || |||||||| ||||| ||| ||| || || ||||||||||| ||||||
Sbjct: 395 gacgacggagggtggtgcaatccgccgcgcgagcattttgatctcgccatgcctatgttc 454
Query: 350 ctc 352
|||
Sbjct: 455 ctc 457
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 48.1 bits (24), Expect = 0.003
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 431 ttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtggccgg 486
||||||||||| || ||| |||||||||| |||||||| |||| ||||| |||||
Sbjct: 464117 ttcacaatcaatggattcaagtacttcaacttggtgctggtcactaacgtagccgg 464172
>emb|AL162874.1|ATT1E22 Arabidopsis thaliana DNA chromosome 5, BAC clone T1E22 (ESSA project)
Length = 96575
Score = 48.1 bits (24), Expect = 0.003
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 431 ttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtggccgg 486
||||||||||| || ||| |||||||||| |||||||| |||| ||||| |||||
Sbjct: 13511 ttcacaatcaatggattcaagtacttcaacttggtgctggtcactaacgtagccgg 13566
>ref|NM_120304.2| Arabidopsis thaliana ATEXPA9 (ARABIDOPSIS THALIANA EXPANSIN A9)
AT5G02260 (ATEXPA9) mRNA, complete cds
Length = 1249
Score = 48.1 bits (24), Expect = 0.003
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 431 ttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtggccgg 486
||||||||||| || ||| |||||||||| |||||||| |||| ||||| |||||
Sbjct: 565 ttcacaatcaatggattcaagtacttcaacttggtgctggtcactaacgtagccgg 620
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 48.1 bits (24), Expect = 0.003
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 431 ttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtggccgg 486
||||||||||| || ||| |||||||||| |||||||| |||| ||||| |||||
Sbjct: 464560 ttcacaatcaatggattcaagtacttcaacttggtgctggtcactaacgtagccgg 464615
>gb|AV824246.1|AV824246 AV824246 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-16-I08 5',
mRNA sequence
Length = 624
Score = 46.1 bits (23), Expect = 0.012
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 290 gacgacggcggctggtgcaacccgccccgcccgcacttcgacctcgccatgcccatgttc 349
|||||||| || |||||||| ||||| ||| ||| || || ||||||||||| ||||||
Sbjct: 412 gacgacggagggtggtgcaatccgccgcgcgagcattttgatctcgccatgcctatgttc 471
Query: 350 ctc 352
|||
Sbjct: 472 ctc 474
>emb|BX818958.1|CNS0A9YC Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB31ZB11 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1221
Score = 44.1 bits (22), Expect = 0.048
Identities = 46/54 (85%)
Strand = Plus / Plus
Query: 429 ggttcacaatcaacggcttccggtacttcaacctggtgctgatcacgaacgtgg 482
|||||||||||||||| ||| ||||||||| | || |||||||| |||||||
Sbjct: 637 ggttcacaatcaacggtcaccgttacttcaactttgttctgatcactaacgtgg 690
>gb|U87586.1|ATU87586 Arabidopsis thaliana decoy mRNA, complete cds
Length = 974
Score = 42.1 bits (21), Expect = 0.19
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 gaattcgcggccgcgtcgacg 26
|||||||||||||||||||||
Sbjct: 16 gaattcgcggccgcgtcgacg 36
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 42.1 bits (21), Expect = 0.19
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 452 tacttcaacctggtgctgatcacgaacgt 480
||||||||||| ||||||||||| |||||
Sbjct: 9269145 tacttcaaccttgtgctgatcacaaacgt 9269173
>gb|AY052247.1| Arabidopsis thaliana At1g26770/T24P13_14 mRNA, complete cds
Length = 1238
Score = 42.1 bits (21), Expect = 0.19
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 452 tacttcaacctggtgctgatcacgaacgt 480
||||||||||| ||||||||||| |||||
Sbjct: 585 tacttcaaccttgtgctgatcacaaacgt 613
>gb|AY060512.1| Arabidopsis thaliana At1g26770/T24P13_14 mRNA, complete cds
Length = 750
Score = 42.1 bits (21), Expect = 0.19
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 452 tacttcaacctggtgctgatcacgaacgt 480
||||||||||| ||||||||||| |||||
Sbjct: 496 tacttcaaccttgtgctgatcacaaacgt 524
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 293,500
Number of Sequences: 1013581
Number of extensions: 293500
Number of successful extensions: 21622
Number of sequences better than 0.5: 57
Number of HSP's better than 0.5 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20913
Number of HSP's gapped (non-prelim): 709
length of query: 1044
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1024
effective length of database: 888,669,252
effective search space: 909997314048
effective search space used: 909997314048
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)