BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4534747.2.1
(628 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AB024033.1| Arabidopsis thaliana genomic DNA, chromosom... 90 5e-016
gb|BT011689.1| Arabidopsis thaliana At3g12690 gene, complet... 90 5e-016
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 90 5e-016
gb|BT020332.1| Arabidopsis thaliana At3g12690 gene, complet... 90 5e-016
ref|NM_112105.2| Arabidopsis thaliana kinase AT3G12690 tran... 90 5e-016
ref|NM_202566.1| Arabidopsis thaliana kinase AT3G12690 tran... 90 5e-016
ref|NM_202567.1| Arabidopsis thaliana kinase AT3G12690 tran... 90 5e-016
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 90 5e-016
emb|CT026263.1| Arabidopsis thaliana T-DNA flanking sequenc... 86 8e-015
emb|BX942962.1| Arabidopsis thaliana T-DNA flanking sequenc... 78 2e-012
emb|AX507823.1| Sequence 2518 from Patent WO0216655 42 0.11
gb|BT010571.1| Arabidopsis thaliana At3g27580 gene, complet... 42 0.11
dbj|D10910.1|ATHATPK Arabidopsis thaliana Atpk7 gene for se... 42 0.11
dbj|AB025626.1| Arabidopsis thaliana genomic DNA, chromosom... 42 0.11
dbj|AK175529.1| Arabidopsis thaliana mRNA for serine/threon... 42 0.11
dbj|AK176399.1| Arabidopsis thaliana mRNA for serine/threon... 42 0.11
ref|NM_113674.2| Arabidopsis thaliana ATPK7; kinase AT3G275... 42 0.11
ref|NM_001035707.1| Arabidopsis thaliana ATPK7; kinase AT3G... 42 0.11
gb|CL476356.1|CL476356 SAIL_253_A04.v1 SAIL Collection Arab... 40 0.45
gb|AY199279.1|AY199279 AY199279 Arabidopsis thaliana Landsb... 40 0.45
emb|AX509865.1| Sequence 4560 from Patent WO0216655 40 0.45
gb|AC006836.7| Arabidopsis thaliana chromosome 2 clone F19B... 40 0.45
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 40 0.45
>dbj|AB024033.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MBK21
Length = 79125
Score = 89.7 bits (45), Expect = 5e-016
Identities = 99/117 (84%)
Strand = Plus / Minus
Query: 92 cacgagtacctcgcgccggagatcgtcagaggcgagggccacgggagcgcggtggactgg 151
||||||||||| || || |||||| | | |||||||| || || ||||| |||||||||
Sbjct: 16005 cacgagtacctagctccagagatcatacgtggcgagggacatggcagcgctgtggactgg 15946
Query: 152 tggaccttcggcatcttcctgtacgagctcctccatggcacgacgccgttcaagggg 208
||||| ||||| |||||||| || |||||||||||||| || || ||||||||||||
Sbjct: 15945 tggacattcgggatcttcctttatgagctcctccatgggaccaccccgttcaagggg 15889
>gb|BT011689.1| Arabidopsis thaliana At3g12690 gene, complete cds
Length = 2137
Score = 89.7 bits (45), Expect = 5e-016
Identities = 99/117 (84%)
Strand = Plus / Plus
Query: 92 cacgagtacctcgcgccggagatcgtcagaggcgagggccacgggagcgcggtggactgg 151
||||||||||| || || |||||| | | |||||||| || || ||||| |||||||||
Sbjct: 1534 cacgagtacctagctccagagatcatacgtggcgagggacatggcagcgctgtggactgg 1593
Query: 152 tggaccttcggcatcttcctgtacgagctcctccatggcacgacgccgttcaagggg 208
||||| ||||| |||||||| || |||||||||||||| || || ||||||||||||
Sbjct: 1594 tggacattcgggatcttcctttatgagctcctccatgggaccaccccgttcaagggg 1650
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 89.7 bits (45), Expect = 5e-016
Identities = 99/117 (84%)
Strand = Plus / Minus
Query: 92 cacgagtacctcgcgccggagatcgtcagaggcgagggccacgggagcgcggtggactgg 151
||||||||||| || || |||||| | | |||||||| || || ||||| |||||||||
Sbjct: 4027002 cacgagtacctagctccagagatcatacgtggcgagggacatggcagcgctgtggactgg 4026943
Query: 152 tggaccttcggcatcttcctgtacgagctcctccatggcacgacgccgttcaagggg 208
||||| ||||| |||||||| || |||||||||||||| || || ||||||||||||
Sbjct: 4026942 tggacattcgggatcttcctttatgagctcctccatgggaccaccccgttcaagggg 4026886
Score = 42.1 bits (21), Expect = 0.11
Identities = 72/89 (80%)
Strand = Plus / Minus
Query: 92 cacgagtacctcgcgccggagatcgtcagaggcgagggccacgggagcgcggtggactgg 151
||||||||||| || || ||||| ||| ||| || || || || |||||||| ||||||
Sbjct: 10152120 cacgagtacctagcaccagagattatcaaaggagaaggtcatggaagcgcggttgactgg 10152061
Query: 152 tggaccttcggcatcttcctgtacgagct 180
||||| ||||| || ||||| || |||||
Sbjct: 10152060 tggacattcgggatattcctctatgagct 10152032
>gb|BT020332.1| Arabidopsis thaliana At3g12690 gene, complete cds
Length = 1734
Score = 89.7 bits (45), Expect = 5e-016
Identities = 99/117 (84%)
Strand = Plus / Plus
Query: 92 cacgagtacctcgcgccggagatcgtcagaggcgagggccacgggagcgcggtggactgg 151
||||||||||| || || |||||| | | |||||||| || || ||||| |||||||||
Sbjct: 1237 cacgagtacctagctccagagatcatacgtggcgagggacatggcagcgcagtggactgg 1296
Query: 152 tggaccttcggcatcttcctgtacgagctcctccatggcacgacgccgttcaagggg 208
||||| ||||| |||||||| || |||||||||||||| || || ||||||||||||
Sbjct: 1297 tggacattcgggatcttcctttatgagctcctccatgggaccaccccgttcaagggg 1353
>ref|NM_112105.2| Arabidopsis thaliana kinase AT3G12690 transcript variant AT3G12690.1
mRNA, complete cds
Length = 2185
Score = 89.7 bits (45), Expect = 5e-016
Identities = 99/117 (84%)
Strand = Plus / Plus
Query: 92 cacgagtacctcgcgccggagatcgtcagaggcgagggccacgggagcgcggtggactgg 151
||||||||||| || || |||||| | | |||||||| || || ||||| |||||||||
Sbjct: 1547 cacgagtacctagctccagagatcatacgtggcgagggacatggcagcgctgtggactgg 1606
Query: 152 tggaccttcggcatcttcctgtacgagctcctccatggcacgacgccgttcaagggg 208
||||| ||||| |||||||| || |||||||||||||| || || ||||||||||||
Sbjct: 1607 tggacattcgggatcttcctttatgagctcctccatgggaccaccccgttcaagggg 1663
>ref|NM_202566.1| Arabidopsis thaliana kinase AT3G12690 transcript variant AT3G12690.2
mRNA, complete cds
Length = 2213
Score = 89.7 bits (45), Expect = 5e-016
Identities = 99/117 (84%)
Strand = Plus / Plus
Query: 92 cacgagtacctcgcgccggagatcgtcagaggcgagggccacgggagcgcggtggactgg 151
||||||||||| || || |||||| | | |||||||| || || ||||| |||||||||
Sbjct: 1575 cacgagtacctagctccagagatcatacgtggcgagggacatggcagcgctgtggactgg 1634
Query: 152 tggaccttcggcatcttcctgtacgagctcctccatggcacgacgccgttcaagggg 208
||||| ||||| |||||||| || |||||||||||||| || || ||||||||||||
Sbjct: 1635 tggacattcgggatcttcctttatgagctcctccatgggaccaccccgttcaagggg 1691
>ref|NM_202567.1| Arabidopsis thaliana kinase AT3G12690 transcript variant AT3G12690.3
mRNA, complete cds
Length = 2083
Score = 89.7 bits (45), Expect = 5e-016
Identities = 99/117 (84%)
Strand = Plus / Plus
Query: 92 cacgagtacctcgcgccggagatcgtcagaggcgagggccacgggagcgcggtggactgg 151
||||||||||| || || |||||| | | |||||||| || || ||||| |||||||||
Sbjct: 1445 cacgagtacctagctccagagatcatacgtggcgagggacatggcagcgctgtggactgg 1504
Query: 152 tggaccttcggcatcttcctgtacgagctcctccatggcacgacgccgttcaagggg 208
||||| ||||| |||||||| || |||||||||||||| || || ||||||||||||
Sbjct: 1505 tggacattcgggatcttcctttatgagctcctccatgggaccaccccgttcaagggg 1561
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 89.7 bits (45), Expect = 5e-016
Identities = 99/117 (84%)
Strand = Plus / Minus
Query: 92 cacgagtacctcgcgccggagatcgtcagaggcgagggccacgggagcgcggtggactgg 151
||||||||||| || || |||||| | | |||||||| || || ||||| |||||||||
Sbjct: 4031100 cacgagtacctagctccagagatcatacgtggcgagggacatggcagcgctgtggactgg 4031041
Query: 152 tggaccttcggcatcttcctgtacgagctcctccatggcacgacgccgttcaagggg 208
||||| ||||| |||||||| || |||||||||||||| || || ||||||||||||
Sbjct: 4031040 tggacattcgggatcttcctttatgagctcctccatgggaccaccccgttcaagggg 4030984
Score = 42.1 bits (21), Expect = 0.11
Identities = 72/89 (80%)
Strand = Plus / Minus
Query: 92 cacgagtacctcgcgccggagatcgtcagaggcgagggccacgggagcgcggtggactgg 151
||||||||||| || || ||||| ||| ||| || || || || |||||||| ||||||
Sbjct: 10219387 cacgagtacctagcaccagagattatcaaaggagaaggtcatggaagcgcggttgactgg 10219328
Query: 152 tggaccttcggcatcttcctgtacgagct 180
||||| ||||| || ||||| || |||||
Sbjct: 10219327 tggacattcgggatattcctctatgagct 10219299
>emb|CT026263.1| Arabidopsis thaliana T-DNA flanking sequence GK-326E04-015978,
genomic survey sequence
Length = 153
Score = 85.7 bits (43), Expect = 8e-015
Identities = 76/87 (87%)
Strand = Plus / Minus
Query: 122 ggcgagggccacgggagcgcggtggactggtggaccttcggcatcttcctgtacgagctc 181
|||||||| || || ||||| |||||||||||||| ||||| |||||||| || ||||||
Sbjct: 113 ggcgagggacatggcagcgctgtggactggtggacattcgggatcttcctttatgagctc 54
Query: 182 ctccatggcacgacgccgttcaagggg 208
|||||||| || || ||||||||||||
Sbjct: 53 ctccatgggaccaccccgttcaagggg 27
>emb|BX942962.1| Arabidopsis thaliana T-DNA flanking sequence GK-325E04-015977,
genomic survey sequence
Length = 168
Score = 77.8 bits (39), Expect = 2e-012
Identities = 75/87 (86%)
Strand = Plus / Minus
Query: 122 ggcgagggccacgggagcgcggtggactggtggaccttcggcatcttcctgtacgagctc 181
|||||||| || || ||||| |||||||||||||| ||||| |||||||| || ||||||
Sbjct: 119 ggcgagggacatggcagcgctgtggactggtggacattcgggatcttcctttatgagctc 60
Query: 182 ctccatggcacgacgccgttcaagggg 208
|||||||| || || |||| |||||||
Sbjct: 59 ctccatgggaccaccccgtgcaagggg 33
>emb|AX507823.1| Sequence 2518 from Patent WO0216655
Length = 1737
Score = 42.1 bits (21), Expect = 0.11
Identities = 72/89 (80%)
Strand = Plus / Plus
Query: 92 cacgagtacctcgcgccggagatcgtcagaggcgagggccacgggagcgcggtggactgg 151
||||||||||| || || ||||| ||| ||| || || || || |||||||| ||||||
Sbjct: 1258 cacgagtacctagcaccagagattatcaaaggagaaggtcatggaagcgcggttgactgg 1317
Query: 152 tggaccttcggcatcttcctgtacgagct 180
||||| ||||| || ||||| || |||||
Sbjct: 1318 tggacattcgggatattcctctatgagct 1346
>gb|BT010571.1| Arabidopsis thaliana At3g27580 gene, complete cds
Length = 1737
Score = 42.1 bits (21), Expect = 0.11
Identities = 72/89 (80%)
Strand = Plus / Plus
Query: 92 cacgagtacctcgcgccggagatcgtcagaggcgagggccacgggagcgcggtggactgg 151
||||||||||| || || ||||| ||| ||| || || || || |||||||| ||||||
Sbjct: 1258 cacgagtacctagcaccagagattatcaaaggagaaggtcatggaagcgcggttgactgg 1317
Query: 152 tggaccttcggcatcttcctgtacgagct 180
||||| ||||| || ||||| || |||||
Sbjct: 1318 tggacattcgggatattcctctatgagct 1346
>dbj|D10910.1|ATHATPK Arabidopsis thaliana Atpk7 gene for serine/threonine protein kinase,
complete cds
Length = 4719
Score = 42.1 bits (21), Expect = 0.11
Identities = 72/89 (80%)
Strand = Plus / Plus
Query: 92 cacgagtacctcgcgccggagatcgtcagaggcgagggccacgggagcgcggtggactgg 151
||||||||||| || || ||||| ||| ||| || || || || |||||||| ||||||
Sbjct: 2795 cacgagtacctagcaccagagattatcaaaggagaaggtcatggaagcgcggttgactgg 2854
Query: 152 tggaccttcggcatcttcctgtacgagct 180
||||| ||||| || ||||| || |||||
Sbjct: 2855 tggacattcgggatattcctctatgagct 2883
>dbj|AB025626.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MMJ24
Length = 54452
Score = 42.1 bits (21), Expect = 0.11
Identities = 72/89 (80%)
Strand = Plus / Minus
Query: 92 cacgagtacctcgcgccggagatcgtcagaggcgagggccacgggagcgcggtggactgg 151
||||||||||| || || ||||| ||| ||| || || || || |||||||| ||||||
Sbjct: 47463 cacgagtacctagcaccagagattatcaaaggagaaggtcatggaagcgcggttgactgg 47404
Query: 152 tggaccttcggcatcttcctgtacgagct 180
||||| ||||| || ||||| || |||||
Sbjct: 47403 tggacattcgggatattcctctatgagct 47375
>dbj|AK175529.1| Arabidopsis thaliana mRNA for serine/threonine-protein kinase PK7,
complete cds, clone: RAFL21-94-N11
Length = 2124
Score = 42.1 bits (21), Expect = 0.11
Identities = 72/89 (80%)
Strand = Plus / Plus
Query: 92 cacgagtacctcgcgccggagatcgtcagaggcgagggccacgggagcgcggtggactgg 151
||||||||||| || || ||||| ||| ||| || || || || |||||||| ||||||
Sbjct: 1443 cacgagtacctagcaccagagattatcaaaggagaaggtcatggaagcgcggttgactgg 1502
Query: 152 tggaccttcggcatcttcctgtacgagct 180
||||| ||||| || ||||| || |||||
Sbjct: 1503 tggacattcgggatattcctctatgagct 1531
>dbj|AK176399.1| Arabidopsis thaliana mRNA for serine/threonine-protein kinase, PK7,
complete cds, clone: RAFL24-11-A01
Length = 2483
Score = 42.1 bits (21), Expect = 0.11
Identities = 72/89 (80%)
Strand = Plus / Plus
Query: 92 cacgagtacctcgcgccggagatcgtcagaggcgagggccacgggagcgcggtggactgg 151
||||||||||| || || ||||| ||| ||| || || || || |||||||| ||||||
Sbjct: 1750 cacgagtacctagcaccagagattatcaaaggagaaggtcatggaagcgcggttgactgg 1809
Query: 152 tggaccttcggcatcttcctgtacgagct 180
||||| ||||| || ||||| || |||||
Sbjct: 1810 tggacattcgggatattcctctatgagct 1838
>ref|NM_113674.2| Arabidopsis thaliana ATPK7; kinase AT3G27580 (ATPK7) transcript
variant AT3G27580.1 mRNA, complete cds
Length = 1737
Score = 42.1 bits (21), Expect = 0.11
Identities = 72/89 (80%)
Strand = Plus / Plus
Query: 92 cacgagtacctcgcgccggagatcgtcagaggcgagggccacgggagcgcggtggactgg 151
||||||||||| || || ||||| ||| ||| || || || || |||||||| ||||||
Sbjct: 1258 cacgagtacctagcaccagagattatcaaaggagaaggtcatggaagcgcggttgactgg 1317
Query: 152 tggaccttcggcatcttcctgtacgagct 180
||||| ||||| || ||||| || |||||
Sbjct: 1318 tggacattcgggatattcctctatgagct 1346
>ref|NM_001035707.1| Arabidopsis thaliana ATPK7; kinase AT3G27580 (ATPK7) transcript
variant AT3G27580.2 mRNA, complete cds
Length = 2473
Score = 42.1 bits (21), Expect = 0.11
Identities = 72/89 (80%)
Strand = Plus / Plus
Query: 92 cacgagtacctcgcgccggagatcgtcagaggcgagggccacgggagcgcggtggactgg 151
||||||||||| || || ||||| ||| ||| || || || || |||||||| ||||||
Sbjct: 1750 cacgagtacctagcaccagagattatcaaaggagaaggtcatggaagcgcggttgactgg 1809
Query: 152 tggaccttcggcatcttcctgtacgagct 180
||||| ||||| || ||||| || |||||
Sbjct: 1810 tggacattcgggatattcctctatgagct 1838
>gb|CL476356.1|CL476356 SAIL_253_A04.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_253_A04.v1, DNA sequence
Length = 895
Score = 40.1 bits (20), Expect = 0.45
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 567 atatatcatgtttttgtttt 586
||||||||||||||||||||
Sbjct: 348 atatatcatgtttttgtttt 367
>gb|AY199279.1|AY199279 AY199279 Arabidopsis thaliana Landsberg erecta DNA Arabidopsis
thaliana genomic clone ET5925.Ds3.02.22.00.b.313, DNA
sequence
Length = 313
Score = 40.1 bits (20), Expect = 0.45
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 567 atatatcatgtttttgtttt 586
||||||||||||||||||||
Sbjct: 169 atatatcatgtttttgtttt 188
>emb|AX509865.1| Sequence 4560 from Patent WO0216655
Length = 2000
Score = 40.1 bits (20), Expect = 0.45
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 567 atatatcatgtttttgtttt 586
||||||||||||||||||||
Sbjct: 785 atatatcatgtttttgtttt 766
>gb|AC006836.7| Arabidopsis thaliana chromosome 2 clone F19B11 map RNSI, complete
sequence
Length = 87543
Score = 40.1 bits (20), Expect = 0.45
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 567 atatatcatgtttttgtttt 586
||||||||||||||||||||
Sbjct: 49553 atatatcatgtttttgtttt 49534
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 40.1 bits (20), Expect = 0.45
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 567 atatatcatgtttttgtttt 586
||||||||||||||||||||
Sbjct: 1128403 atatatcatgtttttgtttt 1128384
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 295,433
Number of Sequences: 1013581
Number of extensions: 295433
Number of successful extensions: 23549
Number of sequences better than 0.5: 23
Number of HSP's better than 0.5 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22854
Number of HSP's gapped (non-prelim): 695
length of query: 628
length of database: 908,940,872
effective HSP length: 20
effective length of query: 608
effective length of database: 888,669,252
effective search space: 540310905216
effective search space used: 540310905216
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)