BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 4424526.2.1
         (1446 letters)

Database: At_nucl_with_EST.fasta 
           1,013,581 sequences; 908,940,872 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CL480916.1|CL480916  SAIL_333_B03.v1 SAIL Collection Arab...    46   0.017
ref|NM_106184.1|  Arabidopsis thaliana unknown protein AT1G7...    46   0.017

>gb|CL480916.1|CL480916 SAIL_333_B03.v1 SAIL Collection Arabidopsis thaliana genomic clone
           SAIL_333_B03.v1, DNA sequence
          Length = 942

 Score = 46.1 bits (23), Expect = 0.017
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 136 tcggaagatatacagaaacatct 158
           |||||||||||||||||||||||
Sbjct: 298 tcggaagatatacagaaacatct 320



>ref|NM_106184.1| Arabidopsis thaliana unknown protein AT1G75290 mRNA, complete cds
          Length = 1140

 Score = 46.1 bits (23), Expect = 0.017
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                               
Query: 1057 gtccacgtccaggccgaactccgacgggaagaacctcttgacgtttccggc 1107
            |||||||||||  || ||||| ||||| ||||| ||||||||||| |||||
Sbjct: 412  gtccacgtccatcccaaactcagacggcaagaatctcttgacgttaccggc 362



  Database: At_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:09 PM
  Number of letters in database: 908,940,872
  Number of sequences in database:  1,013,581
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 566,249
Number of Sequences: 1013581
Number of extensions: 566249
Number of successful extensions: 41331
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41329
Number of HSP's gapped (non-prelim): 2
length of query: 1446
length of database: 908,940,872
effective HSP length: 21
effective length of query: 1425
effective length of database: 887,655,671
effective search space: 1264909331175
effective search space used: 1264909331175
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)