BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 4005867.2.1
         (1967 letters)

Database: At_nucl_with_EST.fasta 
           1,013,581 sequences; 908,940,872 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BA000014.8|  Arabidopsis thaliana, chromosome 3, complet...    48   0.006
emb|AL096860.1|ATT21L8  Arabidopsis thaliana DNA chromosome ...    48   0.006
ref|NM_114608.2|  Arabidopsis thaliana enzyme inhibitor/ pec...    48   0.006
ref|NC_003074.4|  Arabidopsis thaliana chromosome 3, complet...    48   0.006

>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
          Length = 23403063

 Score = 48.1 bits (24), Expect = 0.006
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                            
Query: 1190     tctccggcaccatcgacttcatcttcgg 1217
                |||| |||||||||||||||||||||||
Sbjct: 17431424 tctcaggcaccatcgacttcatcttcgg 17431451



>emb|AL096860.1|ATT21L8 Arabidopsis thaliana DNA chromosome 3, BAC clone T21L8
          Length = 87224

 Score = 48.1 bits (24), Expect = 0.006
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 1190  tctccggcaccatcgacttcatcttcgg 1217
             |||| |||||||||||||||||||||||
Sbjct: 66798 tctcaggcaccatcgacttcatcttcgg 66825



>ref|NM_114608.2| Arabidopsis thaliana enzyme inhibitor/ pectinesterase AT3G47400 mRNA,
            complete cds
          Length = 2054

 Score = 48.1 bits (24), Expect = 0.006
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                        
Query: 1190 tctccggcaccatcgacttcatcttcgg 1217
            |||| |||||||||||||||||||||||
Sbjct: 1313 tctcaggcaccatcgacttcatcttcgg 1340



>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
          Length = 23470805

 Score = 48.1 bits (24), Expect = 0.006
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                            
Query: 1190     tctccggcaccatcgacttcatcttcgg 1217
                |||| |||||||||||||||||||||||
Sbjct: 17478362 tctcaggcaccatcgacttcatcttcgg 17478389



  Database: At_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:09 PM
  Number of letters in database: 908,940,872
  Number of sequences in database:  1,013,581
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 558,592
Number of Sequences: 1013581
Number of extensions: 558592
Number of successful extensions: 37294
Number of sequences better than  0.5: 4
Number of HSP's better than  0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36904
Number of HSP's gapped (non-prelim): 390
length of query: 1967
length of database: 908,940,872
effective HSP length: 21
effective length of query: 1946
effective length of database: 887,655,671
effective search space: 1727377935766
effective search space used: 1727377935766
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)