BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3995289.2.1
(559 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BH754602.1|BH754602 SALK_042946.40.65.x Arabidopsis thal... 40 0.40
>gb|BH754602.1|BH754602 SALK_042946.40.65.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_042946.40.65.x,
DNA sequence
Length = 383
Score = 40.1 bits (20), Expect = 0.40
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 348 cttcggtcccggcggcggcggcgg 371
|||||| |||||||||||||||||
Sbjct: 345 cttcgggcccggcggcggcggcgg 368
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 154,587
Number of Sequences: 1013581
Number of extensions: 154587
Number of successful extensions: 10590
Number of sequences better than 0.5: 1
Number of HSP's better than 0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10588
Number of HSP's gapped (non-prelim): 2
length of query: 559
length of database: 908,940,872
effective HSP length: 20
effective length of query: 539
effective length of database: 888,669,252
effective search space: 478992726828
effective search space used: 478992726828
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)