BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3977955.2.1
(867 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 46 0.010
emb|AL096860.1|ATT21L8 Arabidopsis thaliana DNA chromosome ... 46 0.010
ref|NM_114608.2| Arabidopsis thaliana enzyme inhibitor/ pec... 46 0.010
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 46 0.010
gb|CC458766.1|CC458766 SALK_121873.31.20.x Arabidopsis thal... 42 0.16
emb|CR358930.1| Arabidopsis thaliana T-DNA flanking sequenc... 42 0.16
emb|CR358931.1| Arabidopsis thaliana T-DNA flanking sequenc... 42 0.16
emb|AX508385.1| Sequence 3080 from Patent WO0216655 42 0.16
emb|AX510175.1| Sequence 4870 from Patent WO0216655 42 0.16
gb|AC011620.8|ATAC011620 Arabidopsis thaliana chromosome II... 42 0.16
gb|AC005314.3| Arabidopsis thaliana chromosome 2 clone T32F... 42 0.16
ref|NM_111434.2| Arabidopsis thaliana enzyme inhibitor/ pec... 42 0.16
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 42 0.16
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 46.1 bits (23), Expect = 0.010
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 763 ccgaagatgaagtcgatggtgcc 785
|||||||||||||||||||||||
Sbjct: 17431451 ccgaagatgaagtcgatggtgcc 17431429
Score = 42.1 bits (21), Expect = 0.16
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 802 cggaagaactgccgctgcgcgtgcgtgtacagcgtgtcctggtagccgtcgaa 854
||||||||||| || || | ||| ||||| |||||||| |||||||| |||||
Sbjct: 1682655 cggaagaactgacggtgggagtgagtgtagagcgtgtcttggtagccatcgaa 1682603
>emb|AL096860.1|ATT21L8 Arabidopsis thaliana DNA chromosome 3, BAC clone T21L8
Length = 87224
Score = 46.1 bits (23), Expect = 0.010
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 763 ccgaagatgaagtcgatggtgcc 785
|||||||||||||||||||||||
Sbjct: 66825 ccgaagatgaagtcgatggtgcc 66803
>ref|NM_114608.2| Arabidopsis thaliana enzyme inhibitor/ pectinesterase AT3G47400 mRNA,
complete cds
Length = 2054
Score = 46.1 bits (23), Expect = 0.010
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 763 ccgaagatgaagtcgatggtgcc 785
|||||||||||||||||||||||
Sbjct: 1340 ccgaagatgaagtcgatggtgcc 1318
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 46.1 bits (23), Expect = 0.010
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 763 ccgaagatgaagtcgatggtgcc 785
|||||||||||||||||||||||
Sbjct: 17478389 ccgaagatgaagtcgatggtgcc 17478367
Score = 42.1 bits (21), Expect = 0.16
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 802 cggaagaactgccgctgcgcgtgcgtgtacagcgtgtcctggtagccgtcgaa 854
||||||||||| || || | ||| ||||| |||||||| |||||||| |||||
Sbjct: 1626708 cggaagaactgacggtgggagtgagtgtagagcgtgtcttggtagccatcgaa 1626760
>gb|CC458766.1|CC458766 SALK_121873.31.20.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_121873.31.20.x,
DNA sequence
Length = 377
Score = 42.1 bits (21), Expect = 0.16
Identities = 28/29 (96%), Gaps = 1/29 (3%)
Strand = Plus / Minus
Query: 68 ataaaagatgtatataat-taataattga 95
|||||||||||||||||| ||||||||||
Sbjct: 231 ataaaagatgtatataatataataattga 203
>emb|CR358930.1| Arabidopsis thaliana T-DNA flanking sequence GK-732C06-025421,
genomic survey sequence
Length = 340
Score = 42.1 bits (21), Expect = 0.16
Identities = 28/29 (96%), Gaps = 1/29 (3%)
Strand = Plus / Minus
Query: 68 ataaaagatgtatataat-taataattga 95
|||||||||||||||||| ||||||||||
Sbjct: 319 ataaaagatgtatataatataataattga 291
>emb|CR358931.1| Arabidopsis thaliana T-DNA flanking sequence GK-732C06-025443,
genomic survey sequence
Length = 339
Score = 42.1 bits (21), Expect = 0.16
Identities = 28/29 (96%), Gaps = 1/29 (3%)
Strand = Plus / Minus
Query: 68 ataaaagatgtatataat-taataattga 95
|||||||||||||||||| ||||||||||
Sbjct: 318 ataaaagatgtatataatataataattga 290
>emb|AX508385.1| Sequence 3080 from Patent WO0216655
Length = 2000
Score = 42.1 bits (21), Expect = 0.16
Identities = 28/29 (96%), Gaps = 1/29 (3%)
Strand = Plus / Plus
Query: 68 ataaaagatgtatataat-taataattga 95
|||||||||||||||||| ||||||||||
Sbjct: 366 ataaaagatgtatataatataataattga 394
>emb|AX510175.1| Sequence 4870 from Patent WO0216655
Length = 2000
Score = 42.1 bits (21), Expect = 0.16
Identities = 28/29 (96%), Gaps = 1/29 (3%)
Strand = Plus / Minus
Query: 68 ataaaagatgtatataat-taataattga 95
|||||||||||||||||| ||||||||||
Sbjct: 1382 ataaaagatgtatataatataataattga 1354
>gb|AC011620.8|ATAC011620 Arabidopsis thaliana chromosome III BAC F18C1 genomic sequence,
complete sequence
Length = 100887
Score = 42.1 bits (21), Expect = 0.16
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 802 cggaagaactgccgctgcgcgtgcgtgtacagcgtgtcctggtagccgtcgaa 854
||||||||||| || || | ||| ||||| |||||||| |||||||| |||||
Sbjct: 80431 cggaagaactgacggtgggagtgagtgtagagcgtgtcttggtagccatcgaa 80379
>gb|AC005314.3| Arabidopsis thaliana chromosome 2 clone T32F12 map ve016, complete
sequence
Length = 79881
Score = 42.1 bits (21), Expect = 0.16
Identities = 28/29 (96%), Gaps = 1/29 (3%)
Strand = Plus / Plus
Query: 68 ataaaagatgtatataat-taataattga 95
|||||||||||||||||| ||||||||||
Sbjct: 28009 ataaaagatgtatataatataataattga 28037
>ref|NM_111434.2| Arabidopsis thaliana enzyme inhibitor/ pectinesterase AT3G05610 mRNA,
complete cds
Length = 2411
Score = 42.1 bits (21), Expect = 0.16
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 802 cggaagaactgccgctgcgcgtgcgtgtacagcgtgtcctggtagccgtcgaa 854
||||||||||| || || | ||| ||||| |||||||| |||||||| |||||
Sbjct: 1381 cggaagaactgacggtgggagtgagtgtagagcgtgtcttggtagccatcgaa 1329
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 42.1 bits (21), Expect = 0.16
Identities = 28/29 (96%), Gaps = 1/29 (3%)
Strand = Plus / Minus
Query: 68 ataaaagatgtatataat-taataattga 95
|||||||||||||||||| ||||||||||
Sbjct: 14927912 ataaaagatgtatataatataataattga 14927884
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 326,578
Number of Sequences: 1013581
Number of extensions: 326578
Number of successful extensions: 28434
Number of sequences better than 0.5: 13
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 27644
Number of HSP's gapped (non-prelim): 797
length of query: 867
length of database: 908,940,872
effective HSP length: 20
effective length of query: 847
effective length of database: 888,669,252
effective search space: 752702856444
effective search space used: 752702856444
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)