BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3922840.2.1
(683 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CL494529.1|CL494529 SAIL_596_D10.v1 SAIL Collection Arab... 44 0.031
gb|AU227098.1|AU227098 AU227098 RAFL14 Arabidopsis thaliana... 44 0.031
gb|AV800901.1|AV800901 AV800901 RAFL9 Arabidopsis thaliana ... 44 0.031
gb|BP595073.1|BP595073 BP595073 RAFL15 Arabidopsis thaliana... 44 0.031
gb|AY054220.1| Arabidopsis thaliana At2g45660/F17K2.19 mRNA... 44 0.031
gb|AY065206.1| Arabidopsis thaliana unknown protein (At5g62... 44 0.031
gb|AY096509.1| Arabidopsis thaliana unknown protein (At5g62... 44 0.031
dbj|AB016880.1| Arabidopsis thaliana genomic DNA, chromosom... 44 0.031
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 44 0.031
emb|CS137670.1| Sequence 641 from Patent WO2005047516 44 0.031
ref|NM_180916.1| Arabidopsis thaliana AGL42 (AGAMOUS LIKE 4... 44 0.031
ref|NM_125610.2| Arabidopsis thaliana AGL42 (AGAMOUS LIKE 4... 44 0.031
ref|NM_001037046.1| Arabidopsis thaliana AGL42 (AGAMOUS LIK... 44 0.031
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 44 0.031
dbj|AB024028.1| Arabidopsis thaliana genomic DNA, chromosom... 40 0.49
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 40 0.49
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 40 0.49
>gb|CL494529.1|CL494529 SAIL_596_D10.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_596_D10.v1, DNA sequence
Length = 977
Score = 44.1 bits (22), Expect = 0.031
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 113 attatataatatgttcatttatttat 138
||||||||||||||| ||||||||||
Sbjct: 372 attatataatatgtttatttatttat 397
>gb|AU227098.1|AU227098 AU227098 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-79-M10 3',
mRNA sequence
Length = 446
Score = 44.1 bits (22), Expect = 0.031
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 113 attatataatatgttcatttatttat 138
||||||||||||||| ||||||||||
Sbjct: 109 attatataatatgtttatttatttat 84
>gb|AV800901.1|AV800901 AV800901 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-25-P06 3',
mRNA sequence
Length = 426
Score = 44.1 bits (22), Expect = 0.031
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 113 attatataatatgttcatttatttat 138
||||||||||||||| ||||||||||
Sbjct: 79 attatataatatgtttatttatttat 54
>gb|BP595073.1|BP595073 BP595073 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-28-G05 3',
mRNA sequence
Length = 435
Score = 44.1 bits (22), Expect = 0.031
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 113 attatataatatgttcatttatttat 138
||||||||||||||| ||||||||||
Sbjct: 79 attatataatatgtttatttatttat 54
>gb|AY054220.1| Arabidopsis thaliana At2g45660/F17K2.19 mRNA, complete cds
Length = 1092
Score = 44.1 bits (22), Expect = 0.031
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 113 attatataatatgttcatttatttat 138
||||||||||||||| ||||||||||
Sbjct: 1014 attatataatatgtttatttatttat 1039
>gb|AY065206.1| Arabidopsis thaliana unknown protein (At5g62165) mRNA, complete cds
Length = 1108
Score = 44.1 bits (22), Expect = 0.031
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 113 attatataatatgttcatttatttat 138
||||||||||||||| ||||||||||
Sbjct: 1014 attatataatatgtttatttatttat 1039
>gb|AY096509.1| Arabidopsis thaliana unknown protein (At5g62165) mRNA, complete cds
Length = 664
Score = 44.1 bits (22), Expect = 0.031
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 113 attatataatatgttcatttatttat 138
||||||||||||||| ||||||||||
Sbjct: 638 attatataatatgtttatttatttat 663
>dbj|AB016880.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MTG10
Length = 81284
Score = 44.1 bits (22), Expect = 0.031
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 113 attatataatatgttcatttatttat 138
||||||||||||||| ||||||||||
Sbjct: 71176 attatataatatgtttatttatttat 71201
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 44.1 bits (22), Expect = 0.031
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 113 attatataatatgttcatttatttat 138
||||||||||||||| ||||||||||
Sbjct: 22153755 attatataatatgtttatttatttat 22153780
>emb|CS137670.1| Sequence 641 from Patent WO2005047516
Length = 803
Score = 44.1 bits (22), Expect = 0.031
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 113 attatataatatgttcatttatttat 138
||||||||||||||| ||||||||||
Sbjct: 701 attatataatatgtttatttatttat 726
>ref|NM_180916.1| Arabidopsis thaliana AGL42 (AGAMOUS LIKE 42); transcription factor
AT5G62165 (AGL42) transcript variant AT5G62165.1 mRNA,
complete cds
Length = 1091
Score = 44.1 bits (22), Expect = 0.031
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 113 attatataatatgttcatttatttat 138
||||||||||||||| ||||||||||
Sbjct: 1013 attatataatatgtttatttatttat 1038
>ref|NM_125610.2| Arabidopsis thaliana AGL42 (AGAMOUS LIKE 42); transcription factor
AT5G62165 (AGL42) transcript variant AT5G62165.2 mRNA,
complete cds
Length = 884
Score = 44.1 bits (22), Expect = 0.031
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 113 attatataatatgttcatttatttat 138
||||||||||||||| ||||||||||
Sbjct: 858 attatataatatgtttatttatttat 883
>ref|NM_001037046.1| Arabidopsis thaliana AGL42 (AGAMOUS LIKE 42); transcription factor
AT5G62165 (AGL42) transcript variant AT5G62165.3 mRNA,
complete cds
Length = 953
Score = 44.1 bits (22), Expect = 0.031
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 113 attatataatatgttcatttatttat 138
||||||||||||||| ||||||||||
Sbjct: 875 attatataatatgtttatttatttat 900
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 44.1 bits (22), Expect = 0.031
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 113 attatataatatgttcatttatttat 138
||||||||||||||| ||||||||||
Sbjct: 24985668 attatataatatgtttatttatttat 24985693
>dbj|AB024028.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K1G2
Length = 70952
Score = 40.1 bits (20), Expect = 0.49
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 112 tattatataatatgttcatt 131
||||||||||||||||||||
Sbjct: 35226 tattatataatatgttcatt 35207
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 40.1 bits (20), Expect = 0.49
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 112 tattatataatatgttcatt 131
||||||||||||||||||||
Sbjct: 10069141 tattatataatatgttcatt 10069122
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 40.1 bits (20), Expect = 0.49
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 112 tattatataatatgttcatt 131
||||||||||||||||||||
Sbjct: 10136198 tattatataatatgttcatt 10136179
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 267,392
Number of Sequences: 1013581
Number of extensions: 267392
Number of successful extensions: 20249
Number of sequences better than 0.5: 17
Number of HSP's better than 0.5 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19739
Number of HSP's gapped (non-prelim): 510
length of query: 683
length of database: 908,940,872
effective HSP length: 20
effective length of query: 663
effective length of database: 888,669,252
effective search space: 589187714076
effective search space used: 589187714076
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)