BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3871943.2.1
(1085 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BP595440.1|BP595440 BP595440 RAFL15 Arabidopsis thaliana... 56 1e-005
gb|BP598811.1|BP598811 BP598811 RAFL16 Arabidopsis thaliana... 56 1e-005
gb|BP600162.1|BP600162 BP600162 RAFL16 Arabidopsis thaliana... 56 1e-005
gb|BP606373.1|BP606373 BP606373 RAFL16 Arabidopsis thaliana... 56 1e-005
gb|BP610987.1|BP610987 BP610987 RAFL16 Arabidopsis thaliana... 56 1e-005
gb|BP612216.1|BP612216 BP612216 RAFL16 Arabidopsis thaliana... 56 1e-005
gb|BP615003.1|BP615003 BP615003 RAFL16 Arabidopsis thaliana... 56 1e-005
gb|BP615005.1|BP615005 BP615005 RAFL16 Arabidopsis thaliana... 56 1e-005
gb|AC006224.4| Arabidopsis thaliana chromosome 2 clone MFL8... 56 1e-005
emb|BX819811.1|CNS0A7ZT Arabidopsis thaliana Full-length cD... 56 1e-005
emb|BX821476.1|CNS0A808 Arabidopsis thaliana Full-length cD... 56 1e-005
gb|BT023433.1| Arabidopsis thaliana At2g43050 gene, complet... 56 1e-005
ref|NM_129866.3| Arabidopsis thaliana enzyme inhibitor/ pec... 56 1e-005
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 56 1e-005
gb|BP601630.1|BP601630 BP601630 RAFL16 Arabidopsis thaliana... 54 5e-005
gb|BP606140.1|BP606140 BP606140 RAFL16 Arabidopsis thaliana... 50 8e-004
gb|BP606605.1|BP606605 BP606605 RAFL16 Arabidopsis thaliana... 50 8e-004
gb|BP599282.1|BP599282 BP599282 RAFL16 Arabidopsis thaliana... 48 0.003
gb|BP612413.1|BP612413 BP612413 RAFL16 Arabidopsis thaliana... 48 0.003
gb|BP619400.1|BP619400 BP619400 RAFL16 Arabidopsis thaliana... 48 0.003
gb|BP599251.1|BP599251 BP599251 RAFL16 Arabidopsis thaliana... 46 0.013
gb|BP600892.1|BP600892 BP600892 RAFL16 Arabidopsis thaliana... 44 0.050
>gb|BP595440.1|BP595440 BP595440 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-30-B13 3',
mRNA sequence
Length = 452
Score = 56.0 bits (28), Expect = 1e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 572 catcaccaccgtcctcgcgtactccttccacggccg 607
||||||||||||||||| |||||||||||||||||
Sbjct: 383 catcaccaccgtcctcgaatactccttccacggccg 418
>gb|BP598811.1|BP598811 BP598811 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-04-L18 3',
mRNA sequence
Length = 440
Score = 56.0 bits (28), Expect = 1e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 572 catcaccaccgtcctcgcgtactccttccacggccg 607
||||||||||||||||| |||||||||||||||||
Sbjct: 386 catcaccaccgtcctcgaatactccttccacggccg 421
>gb|BP600162.1|BP600162 BP600162 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-44-P08 3',
mRNA sequence
Length = 433
Score = 56.0 bits (28), Expect = 1e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 572 catcaccaccgtcctcgcgtactccttccacggccg 607
||||||||||||||||| |||||||||||||||||
Sbjct: 385 catcaccaccgtcctcgaatactccttccacggccg 420
>gb|BP606373.1|BP606373 BP606373 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-70-K20 3',
mRNA sequence
Length = 436
Score = 56.0 bits (28), Expect = 1e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 572 catcaccaccgtcctcgcgtactccttccacggccg 607
||||||||||||||||| |||||||||||||||||
Sbjct: 383 catcaccaccgtcctcgaatactccttccacggccg 418
>gb|BP610987.1|BP610987 BP610987 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-84-C11 3',
mRNA sequence
Length = 429
Score = 56.0 bits (28), Expect = 1e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 572 catcaccaccgtcctcgcgtactccttccacggccg 607
||||||||||||||||| |||||||||||||||||
Sbjct: 384 catcaccaccgtcctcgaatactccttccacggccg 419
>gb|BP612216.1|BP612216 BP612216 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-88-K17 3',
mRNA sequence
Length = 439
Score = 56.0 bits (28), Expect = 1e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 572 catcaccaccgtcctcgcgtactccttccacggccg 607
||||||||||||||||| |||||||||||||||||
Sbjct: 339 catcaccaccgtcctcgaatactccttccacggccg 374
>gb|BP615003.1|BP615003 BP615003 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-13-H02 3',
mRNA sequence
Length = 470
Score = 56.0 bits (28), Expect = 1e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 572 catcaccaccgtcctcgcgtactccttccacggccg 607
||||||||||||||||| |||||||||||||||||
Sbjct: 434 catcaccaccgtcctcgaatactccttccacggccg 469
>gb|BP615005.1|BP615005 BP615005 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-13-H05 3',
mRNA sequence
Length = 485
Score = 56.0 bits (28), Expect = 1e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 572 catcaccaccgtcctcgcgtactccttccacggccg 607
||||||||||||||||| |||||||||||||||||
Sbjct: 439 catcaccaccgtcctcgaatactccttccacggccg 474
>gb|AC006224.4| Arabidopsis thaliana chromosome 2 clone MFL8 map CIC10F02, complete
sequence
Length = 45714
Score = 56.0 bits (28), Expect = 1e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 572 catcaccaccgtcctcgcgtactccttccacggccg 607
||||||||||||||||| |||||||||||||||||
Sbjct: 24803 catcaccaccgtcctcgaatactccttccacggccg 24838
>emb|BX819811.1|CNS0A7ZT Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS30ZB11 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1759
Score = 56.0 bits (28), Expect = 1e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 572 catcaccaccgtcctcgcgtactccttccacggccg 607
||||||||||||||||| |||||||||||||||||
Sbjct: 1324 catcaccaccgtcctcgaatactccttccacggccg 1289
>emb|BX821476.1|CNS0A808 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL44ZD06 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 388
Score = 56.0 bits (28), Expect = 1e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 572 catcaccaccgtcctcgcgtactccttccacggccg 607
||||||||||||||||| |||||||||||||||||
Sbjct: 92 catcaccaccgtcctcgaatactccttccacggccg 57
>gb|BT023433.1| Arabidopsis thaliana At2g43050 gene, complete cds
Length = 1801
Score = 56.0 bits (28), Expect = 1e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 572 catcaccaccgtcctcgcgtactccttccacggccg 607
||||||||||||||||| |||||||||||||||||
Sbjct: 1305 catcaccaccgtcctcgaatactccttccacggccg 1270
>ref|NM_129866.3| Arabidopsis thaliana enzyme inhibitor/ pectinesterase AT2G43050 mRNA,
complete cds
Length = 1848
Score = 56.0 bits (28), Expect = 1e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 572 catcaccaccgtcctcgcgtactccttccacggccg 607
||||||||||||||||| |||||||||||||||||
Sbjct: 1321 catcaccaccgtcctcgaatactccttccacggccg 1286
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 56.0 bits (28), Expect = 1e-005
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 572 catcaccaccgtcctcgcgtactccttccacggccg 607
||||||||||||||||| |||||||||||||||||
Sbjct: 17910993 catcaccaccgtcctcgaatactccttccacggccg 17910958
>gb|BP601630.1|BP601630 BP601630 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-51-B01 3',
mRNA sequence
Length = 427
Score = 54.0 bits (27), Expect = 5e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 573 atcaccaccgtcctcgcgtactccttccacggccg 607
|||||||||||||||| |||||||||||||||||
Sbjct: 383 atcaccaccgtcctcgaatactccttccacggccg 417
>gb|BP606140.1|BP606140 BP606140 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-69-L22 3',
mRNA sequence
Length = 434
Score = 50.1 bits (25), Expect = 8e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 572 catcaccaccgtcctcgcgtactccttccacgg 604
||||||||||||||||| ||||||||||||||
Sbjct: 384 catcaccaccgtcctcgaatactccttccacgg 416
>gb|BP606605.1|BP606605 BP606605 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-71-I17 3',
mRNA sequence
Length = 441
Score = 50.1 bits (25), Expect = 8e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 572 catcaccaccgtcctcgcgtactccttccacgg 604
||||||||||||||||| ||||||||||||||
Sbjct: 385 catcaccaccgtcctcgaatactccttccacgg 417
>gb|BP599282.1|BP599282 BP599282 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-06-K13 3',
mRNA sequence
Length = 453
Score = 48.1 bits (24), Expect = 0.003
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 572 catcaccaccgtcctcgcgtactccttccacggccg 607
||||||||||||||||| ||||||||||| |||||
Sbjct: 384 catcaccaccgtcctcgaatactccttccagggccg 419
>gb|BP612413.1|BP612413 BP612413 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-89-G16 3',
mRNA sequence
Length = 427
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 573 atcaccaccgtcctcgcgtactccttccacgg 604
|||||||||||||||| ||||||||||||||
Sbjct: 381 atcaccaccgtcctcgaatactccttccacgg 412
>gb|BP619400.1|BP619400 BP619400 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-33-C09 3',
mRNA sequence
Length = 451
Score = 48.1 bits (24), Expect = 0.003
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 572 catcaccaccgtcctcgcgtactccttccacggccg 607
||||||||||||||||| ||||||||||| |||||
Sbjct: 384 catcaccaccgtcctcgaatactccttccagggccg 419
>gb|BP599251.1|BP599251 BP599251 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-06-H11 3',
mRNA sequence
Length = 457
Score = 46.1 bits (23), Expect = 0.013
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 573 atcaccaccgtcctcgcgtactccttccacggccg 607
|||||||||||||||| ||||||||||| |||||
Sbjct: 385 atcaccaccgtcctcgaatactccttccagggccg 419
>gb|BP600892.1|BP600892 BP600892 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-47-P18 3',
mRNA sequence
Length = 413
Score = 44.1 bits (22), Expect = 0.050
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 572 catcaccaccgtcctcgcgtactccttcca 601
||||||||||||||||| |||||||||||
Sbjct: 384 catcaccaccgtcctcgaatactccttcca 413
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 291,884
Number of Sequences: 1013581
Number of extensions: 291884
Number of successful extensions: 19679
Number of sequences better than 0.5: 22
Number of HSP's better than 0.5 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19550
Number of HSP's gapped (non-prelim): 129
length of query: 1085
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1065
effective length of database: 888,669,252
effective search space: 946432753380
effective search space used: 946432753380
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)