BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3871878.2.1
(950 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY065075.1| Arabidopsis thaliana dTDP-glucose 4-6-dehydr... 172 7e-041
gb|AF387787.1| Arabidopsis thaliana UDP-glucuronic acid dec... 172 7e-041
gb|BT003355.1| Arabidopsis thaliana dTDP-glucose 4-6-dehydr... 172 7e-041
emb|BX822635.1|CNS0A7MG Arabidopsis thaliana Full-length cD... 172 7e-041
emb|BX823176.1|CNS0A7M4 Arabidopsis thaliana Full-length cD... 165 2e-038
emb|BX823214.1|CNS0A7KG Arabidopsis thaliana Full-length cD... 159 1e-036
gb|AI993085.1|AI993085 701495293 A. thaliana, Ohio State cl... 153 7e-035
gb|BE523714.1|BE523714 M40G5STM Arabidopsis developing seed... 147 4e-033
ref|NM_180363.1| Arabidopsis thaliana UXS1 (UDP-GLUCURONIC ... 133 6e-029
ref|NM_115212.2| Arabidopsis thaliana UXS1 (UDP-GLUCURONIC ... 133 6e-029
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 127 4e-027
emb|AL132966.1|ATF4P12 Arabidopsis thaliana DNA chromosome ... 127 4e-027
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 127 4e-027
gb|BE530488.1|BE530488 M77D03STM Arabidopsis developing see... 105 1e-020
emb|BX894258.1| Arabidopsis thaliana T-DNA flanking sequenc... 92 2e-016
emb|BX824800.1|CNS0A7L3 Arabidopsis thaliana Full-length cD... 82 2e-013
gb|AV551147.1|AV551147 AV551147 Arabidopsis thaliana roots ... 64 5e-008
emb|Z49239.1|ATD18MR A.thaliana mRNA for putative dTDP-gluc... 64 5e-008
gb|AF361617.1| Arabidopsis thaliana AT3g62830/F26K9_260 mRN... 64 5e-008
gb|AY143897.1| Arabidopsis thaliana At3g62830/F26K9_260 mRN... 64 5e-008
gb|AF387788.1| Arabidopsis thaliana UDP-glucuronic acid dec... 64 5e-008
ref|NM_116148.1| Arabidopsis thaliana UXS2 (UDP-GLUCURONIC ... 64 5e-008
gb|AQ964497.1|AQ964497 LERGW63TF LERG Arabidopsis thaliana ... 60 7e-007
gb|AV821940.1|AV821940 AV821940 RAFL4 Arabidopsis thaliana ... 60 7e-007
gb|CB264814.1|CB264814 33-E015022-035-004-A10-T7R MPIZ-ADIS... 60 7e-007
emb|AX505495.1| Sequence 190 from Patent WO0216655 60 7e-007
gb|BV007525.1| MASC_STS15893 Arabidopsis thaliana (C24 acce... 60 7e-007
gb|BV007526.1| MASC_STS15883 Arabidopsis thaliana (Yosemite... 60 7e-007
gb|BV007652.1| MASC_STS15888 Arabidopsis thaliana (Koncheze... 60 7e-007
gb|BV008023.1| MASC_STS15892 Arabidopsis thaliana (Lezoux/P... 60 7e-007
gb|BV008024.1| MASC_STS15890 Arabidopsis thaliana (Weininge... 60 7e-007
gb|BV008025.1| MASC_STS15886 Arabidopsis thaliana (Niederze... 60 7e-007
gb|BV008026.1| MASC_STS15885 Arabidopsis thaliana (Guecking... 60 7e-007
gb|AC002535.3| Arabidopsis thaliana chromosome 2 clone T30B... 60 7e-007
gb|AC005309.3| Arabidopsis thaliana chromosome 2 clone F17A... 60 7e-007
gb|BT022016.1| Arabidopsis thaliana At2g47650 gene, complet... 60 7e-007
ref|NM_130333.1| Arabidopsis thaliana UXS4 (UDP-XYLOSE SYNT... 60 7e-007
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 60 7e-007
gb|AY050389.1| Arabidopsis thaliana AT3g62830/F26K9_260 mRN... 56 1e-005
gb|AI992875.1|AI992875 701493834 A. thaliana, Ohio State cl... 52 2e-004
gb|BX839560.1|BX839560 BX839560 Arabidopsis thaliana Adult ... 52 2e-004
gb|CK121683.1|CK121683 202b24.p1 AtM1 Arabidopsis thaliana ... 52 2e-004
gb|AY072098.1| Arabidopsis thaliana putative dTDP-glucose 4... 52 2e-004
gb|AY096586.1| Arabidopsis thaliana putative dTDP-glucose 4... 52 2e-004
gb|AY087118.1| Arabidopsis thaliana clone 31901 mRNA, compl... 52 2e-004
emb|BX825822.1|CNS0A4P6 Arabidopsis thaliana Full-length cD... 52 2e-004
emb|BX824968.1|CNS0A6QT Arabidopsis thaliana Full-length cD... 52 2e-004
emb|BX823718.1|CNS0A7QP Arabidopsis thaliana Full-length cD... 52 2e-004
ref|NM_114511.2| Arabidopsis thaliana UXS5; catalytic AT3G4... 52 2e-004
ref|NM_001035743.1| Arabidopsis thaliana UXS5; catalytic AT... 52 2e-004
gb|BE530706.1|BE530706 M78I20STM Arabidopsis developing see... 50 7e-004
gb|AV550208.1|AV550208 AV550208 Arabidopsis thaliana roots ... 50 7e-004
gb|AV553003.1|AV553003 AV553003 Arabidopsis thaliana roots ... 50 7e-004
gb|BZ354118.1|BZ354118 SALK_123223.47.80.x Arabidopsis thal... 46 0.011
gb|CW800989.1|CW800989 WiscDsLox293-296invD4 Arabidopsis th... 46 0.011
emb|AL133298.1|ATF18L15 Arabidopsis thaliana DNA chromosome... 46 0.011
emb|AL162651.1|ATF26K9 Arabidopsis thaliana DNA chromosome ... 46 0.011
gb|AQ225330.1|AQ225330 T25E1TFD TAMU Arabidopsis thaliana g... 44 0.044
emb|AL091823.1|CNS00V4H Arabidopsis thaliana genome survey ... 44 0.044
gb|CB259007.1|CB259007 77-E011797-014-004-I19-T7R MPIZ-ADIS... 44 0.044
emb|CT026070.1| Arabidopsis thaliana T-DNA flanking sequenc... 42 0.17
gb|R90332.1|R90332 16687 Lambda-PRL2 Arabidopsis thaliana c... 42 0.17
gb|BE038079.1|BE038079 AA08F03 AA Arabidopsis thaliana cDNA... 42 0.17
gb|AV821751.1|AV821751 AV821751 RAFL4 Arabidopsis thaliana ... 42 0.17
>gb|AY065075.1| Arabidopsis thaliana dTDP-glucose 4-6-dehydratase-like protein
(F4P12.220) mRNA, complete cds
Length = 1666
Score = 172 bits (87), Expect = 7e-041
Identities = 174/203 (85%)
Strand = Plus / Minus
Query: 176 tcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttctgt 235
|||||||| || ||||| |||| || ||||| |||| |||||||| | ||| ||||||
Sbjct: 898 tcatcatagcaactcctctcaccgattggattcacgtttccccagtaagtctctttctgt 839
Query: 236 ggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgcacca 295
||||||||||| ||||| ||||| |||||||||||||| || | || ||||||||| |||
Sbjct: 838 ggatgctcaaggggatctccatagacttcacttgtgctggtgagcagaaaccttgcccca 779
Query: 296 actcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtcttg 355
|||| |||||| |||||||||||||| | ||| ||||| |||||||||||||| ||||||
Sbjct: 778 actctctttgcaagacccaacatattgagagtgcccattacatttgtcttgatagtcttg 719
Query: 356 attgggttatacttgtaatgaac 378
| ||| |||||||||||||||||
Sbjct: 718 actggattatacttgtaatgaac 696
Score = 42.1 bits (21), Expect = 0.17
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 491 ttctccttcctgccggtgaagaagttgtcgaccacgatcac 531
||||||||||| || ||||||||||| || | |||||||||
Sbjct: 583 ttctccttcctaccagtgaagaagttatcaatcacgatcac 543
>gb|AF387787.1| Arabidopsis thaliana UDP-glucuronic acid decarboxylase (UXS1) mRNA,
complete cds
Length = 1302
Score = 172 bits (87), Expect = 7e-041
Identities = 174/203 (85%)
Strand = Plus / Minus
Query: 176 tcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttctgt 235
|||||||| || ||||| |||| || ||||| |||| |||||||| | ||| ||||||
Sbjct: 791 tcatcatagcaactcctctcaccgattggattcacgtttccccagtaagtctctttctgt 732
Query: 236 ggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgcacca 295
||||||||||| ||||| ||||| |||||||||||||| || | || ||||||||| |||
Sbjct: 731 ggatgctcaaggggatctccatagacttcacttgtgctggtgagcagaaaccttgcccca 672
Query: 296 actcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtcttg 355
|||| |||||| |||||||||||||| | ||| ||||| |||||||||||||| ||||||
Sbjct: 671 actctctttgcaagacccaacatattgagagtgcccattacatttgtcttgatagtcttg 612
Query: 356 attgggttatacttgtaatgaac 378
| ||| |||||||||||||||||
Sbjct: 611 actggattatacttgtaatgaac 589
Score = 42.1 bits (21), Expect = 0.17
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 491 ttctccttcctgccggtgaagaagttgtcgaccacgatcac 531
||||||||||| || ||||||||||| || | |||||||||
Sbjct: 476 ttctccttcctaccagtgaagaagttatcaatcacgatcac 436
>gb|BT003355.1| Arabidopsis thaliana dTDP-glucose 4-6-dehydratase-like protein
(At3g53520) mRNA, complete cds
Length = 1492
Score = 172 bits (87), Expect = 7e-041
Identities = 174/203 (85%)
Strand = Plus / Minus
Query: 176 tcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttctgt 235
|||||||| || ||||| |||| || ||||| |||| |||||||| | ||| ||||||
Sbjct: 791 tcatcatagcaactcctctcaccgattggattcacgtttccccagtaagtctctttctgt 732
Query: 236 ggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgcacca 295
||||||||||| ||||| ||||| |||||||||||||| || | || ||||||||| |||
Sbjct: 731 ggatgctcaaggggatctccatagacttcacttgtgctggtgagcagaaaccttgcccca 672
Query: 296 actcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtcttg 355
|||| |||||| |||||||||||||| | ||| ||||| |||||||||||||| ||||||
Sbjct: 671 actctctttgcaagacccaacatattgagagtgcccattacatttgtcttgatagtcttg 612
Query: 356 attgggttatacttgtaatgaac 378
| ||| |||||||||||||||||
Sbjct: 611 actggattatacttgtaatgaac 589
Score = 42.1 bits (21), Expect = 0.17
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 491 ttctccttcctgccggtgaagaagttgtcgaccacgatcac 531
||||||||||| || ||||||||||| || | |||||||||
Sbjct: 476 ttctccttcctaccagtgaagaagttatcaatcacgatcac 436
>emb|BX822635.1|CNS0A7MG Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB54ZH12 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1604
Score = 172 bits (87), Expect = 7e-041
Identities = 174/203 (85%)
Strand = Plus / Minus
Query: 176 tcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttctgt 235
|||||||| || ||||| |||| || ||||| |||| |||||||| | ||| ||||||
Sbjct: 885 tcatcatagcaactcctctcaccgattggattcacgtttccccagtaagtctctttctgt 826
Query: 236 ggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgcacca 295
||||||||||| ||||| ||||| |||||||||||||| || | || ||||||||| |||
Sbjct: 825 ggatgctcaaggggatctccatagacttcacttgtgctggtgagcagaaaccttgcccca 766
Query: 296 actcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtcttg 355
|||| |||||| |||||||||||||| | ||| ||||| |||||||||||||| ||||||
Sbjct: 765 actctctttgcaagacccaacatattgagagtgcccattacatttgtcttgatagtcttg 706
Query: 356 attgggttatacttgtaatgaac 378
| ||| |||||||||||||||||
Sbjct: 705 actggattatacttgtaatgaac 683
Score = 42.1 bits (21), Expect = 0.17
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 491 ttctccttcctgccggtgaagaagttgtcgaccacgatcac 531
||||||||||| || ||||||||||| || | |||||||||
Sbjct: 572 ttctccttcctaccagtgaagaagttatcaatcacgatcac 532
>emb|BX823176.1|CNS0A7M4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB95ZE05 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1648
Score = 165 bits (83), Expect = 2e-038
Identities = 173/203 (85%)
Strand = Plus / Minus
Query: 176 tcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttctgt 235
|||||||| || ||||| |||| || ||||| |||| ||||||| | ||| ||||||
Sbjct: 942 tcatcatagcaactcctctcaccgattggattcacgtttccccagtgagtctctttctgt 883
Query: 236 ggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgcacca 295
||||||||||| ||||| ||||| |||||||||||||| || | || ||||||||| |||
Sbjct: 882 ggatgctcaaggggatctccatagacttcacttgtgctggtgagcagaaaccttgcccca 823
Query: 296 actcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtcttg 355
|||| |||||| |||||||||||||| | ||| ||||| |||||||||||||| ||||||
Sbjct: 822 actctctttgcaagacccaacatattgagagtgcccattacatttgtcttgatagtcttg 763
Query: 356 attgggttatacttgtaatgaac 378
| ||| |||||||||||||||||
Sbjct: 762 actggattatacttgtaatgaac 740
Score = 42.1 bits (21), Expect = 0.17
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 491 ttctccttcctgccggtgaagaagttgtcgaccacgatcac 531
||||||||||| || ||||||||||| || | |||||||||
Sbjct: 627 ttctccttcctaccagtgaagaagttatcaatcacgatcac 587
>emb|BX823214.1|CNS0A7KG Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS11ZE03 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1608
Score = 159 bits (80), Expect = 1e-036
Identities = 174/204 (85%), Gaps = 1/204 (0%)
Strand = Plus / Minus
Query: 176 tcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttctgt 235
|||||||| || ||||| |||| || ||||| |||| |||||||| | ||| ||||||
Sbjct: 888 tcatcatagcaactcctctcaccgattggattcacgtttccccagtaagtctctttctgt 829
Query: 236 ggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgcacc- 294
||||||||||| ||||| ||||| |||||||||||||| || | || ||||||||| ||
Sbjct: 828 ggatgctcaaggggatctccatagacttcacttgtgctggtgagcagaaaccttgccccc 769
Query: 295 aactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtctt 354
||||| |||||| |||||||||||||| | ||| ||||| |||||||||||||| |||||
Sbjct: 768 aactctctttgcaagacccaacatattgagagtgcccatcacatttgtcttgatagtctt 709
Query: 355 gattgggttatacttgtaatgaac 378
|| ||| |||||||||||||||||
Sbjct: 708 gactggattatacttgtaatgaac 685
Score = 42.1 bits (21), Expect = 0.17
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 491 ttctccttcctgccggtgaagaagttgtcgaccacgatcac 531
||||||||||| || ||||||||||| || | |||||||||
Sbjct: 572 ttctccttcctaccagtgaagaagttatcaatcacgatcac 532
>gb|AI993085.1|AI993085 701495293 A. thaliana, Ohio State clone set Arabidopsis thaliana
cDNA clone 701495293, mRNA sequence
Length = 420
Score = 153 bits (77), Expect = 7e-035
Identities = 143/165 (86%)
Strand = Plus / Minus
Query: 214 cccccagtatgactccttctgtggatgctcaagtggatcaccataaacttcacttgtgct 273
||||||||| | ||| ||||||||||||||||| ||||| ||| ||||||||||||||
Sbjct: 396 cccccagtaagtctctttctgtggatgctcaaggggatctgaatagacttcacttgtgct 337
Query: 274 agtcaacaaaaaccttgcaccaactcgctttgccagacccaacatattcaaagttcccat 333
|| | || ||||||||| ||||||| |||||| |||||||||||||| | ||| |||||
Sbjct: 336 ggtgagcagaaaccttgccccaactctctttgcaagacccaacatattgagagtgcccat 277
Query: 334 gacatttgtcttgatcgtcttgattgggttatacttgtaatgaac 378
|||||||||||||| ||||||| ||| |||||||||||||||||
Sbjct: 276 tacatttgtcttgatagtcttgactggattatacttgtaatgaac 232
Score = 42.1 bits (21), Expect = 0.17
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 491 ttctccttcctgccggtgaagaagttgtcgaccacgatcac 531
||||||||||| || ||||||||||| || | |||||||||
Sbjct: 119 ttctccttcctaccagtgaagaagttatcaatcacgatcac 79
>gb|BE523714.1|BE523714 M40G5STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone M40G5 5', mRNA sequence
Length = 344
Score = 147 bits (74), Expect = 4e-033
Identities = 127/145 (87%)
Strand = Plus / Minus
Query: 234 gtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgcac 293
||||||||||||| ||||| ||||| |||||||||||| | || | || ||||||||| |
Sbjct: 344 gtggatgctcaaggggatctccatagacttcacttgtgntggtgagcagaaaccttgccc 285
Query: 294 caactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatcgtct 353
|||||| |||||| |||||||||||||| | ||| ||||| |||||||||||||| ||||
Sbjct: 284 caactctctttgcaagacccaacatattgagagtgcccattacatttgtcttgatagtct 225
Query: 354 tgattgggttatacttgtaatgaac 378
||| ||| |||||||||||||||||
Sbjct: 224 tgactggattatacttgtaatgaac 200
Score = 42.1 bits (21), Expect = 0.17
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 491 ttctccttcctgccggtgaagaagttgtcgaccacgatcac 531
||||||||||| || ||||||||||| || | |||||||||
Sbjct: 87 ttctccttcctaccagtgaagaagttatcaatcacgatcac 47
>ref|NM_180363.1| Arabidopsis thaliana UXS1 (UDP-GLUCURONIC ACID DECARBOXYLASE 1);
catalytic AT3G53520 (UXS1) transcript variant
AT3G53520.1 mRNA, complete cds
Length = 1529
Score = 133 bits (67), Expect = 6e-029
Identities = 145/171 (84%)
Strand = Plus / Minus
Query: 176 tcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttctgt 235
|||||||| || ||||| |||| || ||||| |||| |||||||| | ||| ||||||
Sbjct: 764 tcatcatagcaactcctctcaccgattggattcacgtttccccagtaagtctctttctgt 705
Query: 236 ggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgcacca 295
||||||||||| ||||| ||||| |||||||||||||| || | || ||||||||| |||
Sbjct: 704 ggatgctcaaggggatctccatagacttcacttgtgctggtgagcagaaaccttgcccca 645
Query: 296 actcgctttgccagacccaacatattcaaagttcccatgacatttgtcttg 346
|||| |||||| |||||||||||||| | ||| ||||| ||||||||||||
Sbjct: 644 actctctttgcaagacccaacatattgagagtgcccattacatttgtcttg 594
Score = 42.1 bits (21), Expect = 0.17
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 491 ttctccttcctgccggtgaagaagttgtcgaccacgatcac 531
||||||||||| || ||||||||||| || | |||||||||
Sbjct: 476 ttctccttcctaccagtgaagaagttatcaatcacgatcac 436
>ref|NM_115212.2| Arabidopsis thaliana UXS1 (UDP-GLUCURONIC ACID DECARBOXYLASE 1);
catalytic AT3G53520 (UXS1) transcript variant
AT3G53520.2 mRNA, complete cds
Length = 1531
Score = 133 bits (67), Expect = 6e-029
Identities = 145/171 (84%)
Strand = Plus / Minus
Query: 176 tcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttctgt 235
|||||||| || ||||| |||| || ||||| |||| |||||||| | ||| ||||||
Sbjct: 764 tcatcatagcaactcctctcaccgattggattcacgtttccccagtaagtctctttctgt 705
Query: 236 ggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgcacca 295
||||||||||| ||||| ||||| |||||||||||||| || | || ||||||||| |||
Sbjct: 704 ggatgctcaaggggatctccatagacttcacttgtgctggtgagcagaaaccttgcccca 645
Query: 296 actcgctttgccagacccaacatattcaaagttcccatgacatttgtcttg 346
|||| |||||| |||||||||||||| | ||| ||||| ||||||||||||
Sbjct: 644 actctctttgcaagacccaacatattgagagtgcccattacatttgtcttg 594
Score = 42.1 bits (21), Expect = 0.17
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 491 ttctccttcctgccggtgaagaagttgtcgaccacgatcac 531
||||||||||| || ||||||||||| || | |||||||||
Sbjct: 476 ttctccttcctaccagtgaagaagttatcaatcacgatcac 436
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 127 bits (64), Expect = 4e-027
Identities = 115/132 (87%)
Strand = Plus / Minus
Query: 215 ccccagtatgactccttctgtggatgctcaagtggatcaccataaacttcacttgtgcta 274
|||||||| | ||| ||||||||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 19806085 ccccagtaagtctctttctgtggatgctcaaggggatctccatagacttcacttgtgctg 19806026
Query: 275 gtcaacaaaaaccttgcaccaactcgctttgccagacccaacatattcaaagttcccatg 334
|| | || ||||||||| ||||||| |||||| |||||||||||||| | ||| |||||
Sbjct: 19806025 gtgagcagaaaccttgccccaactctctttgcaagacccaacatattgagagtgcccatt 19805966
Query: 335 acatttgtcttg 346
||||||||||||
Sbjct: 19805965 acatttgtcttg 19805954
Score = 46.1 bits (23), Expect = 0.011
Identities = 107/135 (79%)
Strand = Plus / Minus
Query: 196 accaataggattaacgtgcccccagtatgactccttctgtggatgctcaagtggatcacc 255
|||||| |||||||||| |||||||| | ||| ||| ||||||| || ||||||||
Sbjct: 23176619 accaatgggattaacgttgccccagtaagtctcaacctgaggatgctgcagaggatcacc 23176560
Query: 256 ataaacttcacttgtgctagtcaacaaaaaccttgcaccaactcgctttgccagacccaa 315
|||||| ||||| || || |||| | ||| || || ||||||||||| |||| ||| |
Sbjct: 23176559 ataaacctcactggtactcgtcagaagaaatctagccccaactcgcttagccaaaccaag 23176500
Query: 316 catattcaaagttcc 330
||| ||||| |||||
Sbjct: 23176499 catgttcaatgttcc 23176485
Score = 46.1 bits (23), Expect = 0.011
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 176 tcatcataacagctcctaacacc 198
|||||||||||||||||||||||
Sbjct: 17054193 tcatcataacagctcctaacacc 17054215
Score = 44.1 bits (22), Expect = 0.044
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 345 tgatcgtcttgattgggttatacttgtaatgaac 378
|||| ||||||| ||| |||||||||||||||||
Sbjct: 19805707 tgatagtcttgactggattatacttgtaatgaac 19805674
Score = 42.1 bits (21), Expect = 0.17
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 491 ttctccttcctgccggtgaagaagttgtcgaccacgatcac 531
||||||||||| || ||||||||||| || | |||||||||
Sbjct: 19805561 ttctccttcctaccagtgaagaagttatcaatcacgatcac 19805521
>emb|AL132966.1|ATF4P12 Arabidopsis thaliana DNA chromosome 3, BAC clone F4P12
Length = 144628
Score = 127 bits (64), Expect = 4e-027
Identities = 115/132 (87%)
Strand = Plus / Minus
Query: 215 ccccagtatgactccttctgtggatgctcaagtggatcaccataaacttcacttgtgcta 274
|||||||| | ||| ||||||||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 83304 ccccagtaagtctctttctgtggatgctcaaggggatctccatagacttcacttgtgctg 83245
Query: 275 gtcaacaaaaaccttgcaccaactcgctttgccagacccaacatattcaaagttcccatg 334
|| | || ||||||||| ||||||| |||||| |||||||||||||| | ||| |||||
Sbjct: 83244 gtgagcagaaaccttgccccaactctctttgcaagacccaacatattgagagtgcccatt 83185
Query: 335 acatttgtcttg 346
||||||||||||
Sbjct: 83184 acatttgtcttg 83173
Score = 44.1 bits (22), Expect = 0.044
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 345 tgatcgtcttgattgggttatacttgtaatgaac 378
|||| ||||||| ||| |||||||||||||||||
Sbjct: 82926 tgatagtcttgactggattatacttgtaatgaac 82893
Score = 42.1 bits (21), Expect = 0.17
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 491 ttctccttcctgccggtgaagaagttgtcgaccacgatcac 531
||||||||||| || ||||||||||| || | |||||||||
Sbjct: 82780 ttctccttcctaccagtgaagaagttatcaatcacgatcac 82740
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 127 bits (64), Expect = 4e-027
Identities = 115/132 (87%)
Strand = Plus / Minus
Query: 215 ccccagtatgactccttctgtggatgctcaagtggatcaccataaacttcacttgtgcta 274
|||||||| | ||| ||||||||||||||||| ||||| ||||| ||||||||||||||
Sbjct: 19853612 ccccagtaagtctctttctgtggatgctcaaggggatctccatagacttcacttgtgctg 19853553
Query: 275 gtcaacaaaaaccttgcaccaactcgctttgccagacccaacatattcaaagttcccatg 334
|| | || ||||||||| ||||||| |||||| |||||||||||||| | ||| |||||
Sbjct: 19853552 gtgagcagaaaccttgccccaactctctttgcaagacccaacatattgagagtgcccatt 19853493
Query: 335 acatttgtcttg 346
||||||||||||
Sbjct: 19853492 acatttgtcttg 19853481
Score = 46.1 bits (23), Expect = 0.011
Identities = 107/135 (79%)
Strand = Plus / Minus
Query: 196 accaataggattaacgtgcccccagtatgactccttctgtggatgctcaagtggatcacc 255
|||||| |||||||||| |||||||| | ||| ||| ||||||| || ||||||||
Sbjct: 23244363 accaatgggattaacgttgccccagtaagtctcaacctgaggatgctgcagaggatcacc 23244304
Query: 256 ataaacttcacttgtgctagtcaacaaaaaccttgcaccaactcgctttgccagacccaa 315
|||||| ||||| || || |||| | ||| || || ||||||||||| |||| ||| |
Sbjct: 23244303 ataaacctcactggtactcgtcagaagaaatctagccccaactcgcttagccaaaccaag 23244244
Query: 316 catattcaaagttcc 330
||| ||||| |||||
Sbjct: 23244243 catgttcaatgttcc 23244229
Score = 46.1 bits (23), Expect = 0.011
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 176 tcatcataacagctcctaacacc 198
|||||||||||||||||||||||
Sbjct: 17101131 tcatcataacagctcctaacacc 17101153
Score = 44.1 bits (22), Expect = 0.044
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 345 tgatcgtcttgattgggttatacttgtaatgaac 378
|||| ||||||| ||| |||||||||||||||||
Sbjct: 19853234 tgatagtcttgactggattatacttgtaatgaac 19853201
Score = 42.1 bits (21), Expect = 0.17
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 491 ttctccttcctgccggtgaagaagttgtcgaccacgatcac 531
||||||||||| || ||||||||||| || | |||||||||
Sbjct: 19853088 ttctccttcctaccagtgaagaagttatcaatcacgatcac 19853048
>gb|BE530488.1|BE530488 M77D03STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone 600040010R1 5', mRNA sequence
Length = 256
Score = 105 bits (53), Expect = 1e-020
Identities = 119/141 (84%)
Strand = Plus / Minus
Query: 176 tcatcataacagctcctaacaccaataggattaacgtgcccccagtatgactccttctgt 235
|||||||| || ||||| |||| || ||||| |||| |||||||| | ||| ||||||
Sbjct: 141 tcatcatagcaactcctctcaccgattggattcacgtttccccagtaagtctctttctgt 82
Query: 236 ggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaaccttgcacca 295
||||||||||| ||||| ||||| |||||||||||||| || | || ||||||||| |||
Sbjct: 81 ggatgctcaaggggatctccatagacttcacttgtgctggtgagcagaaaccttgcccca 22
Query: 296 actcgctttgccagacccaac 316
|||| |||||| |||||||||
Sbjct: 21 actctctttgcaagacccaac 1
>emb|BX894258.1| Arabidopsis thaliana T-DNA flanking sequence GK-663F07-023926,
genomic survey sequence
Length = 466
Score = 91.7 bits (46), Expect = 2e-016
Identities = 85/98 (86%)
Strand = Plus / Plus
Query: 249 gatcaccataaacttcacttgtgctagtcaacaaaaaccttgcaccaactcgctttgcca 308
|||| ||||| |||||||||||||| || | || ||||||||| ||||||| |||||| |
Sbjct: 1 gatctccatagacttcacttgtgctggtgagcagaaaccttgccccaactctctttgcaa 60
Query: 309 gacccaacatattcaaagttcccatgacatttgtcttg 346
||||||||||||| | ||| ||||| ||||||||||||
Sbjct: 61 gacccaacatattgagagtgcccattacatttgtcttg 98
Score = 44.1 bits (22), Expect = 0.044
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 345 tgatcgtcttgattgggttatacttgtaatgaac 378
|||| ||||||| ||| |||||||||||||||||
Sbjct: 345 tgatagtcttgactggattatacttgtaatgaac 378
>emb|BX824800.1|CNS0A7L3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH73ZC05 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1687
Score = 81.8 bits (41), Expect = 2e-013
Identities = 122/149 (81%)
Strand = Plus / Minus
Query: 230 ttctgtggatgctcaagtggatcaccataaacttcacttgtgctagtcaacaaaaacctt 289
|||||| |||||| ||| ||||| |||| | ||||||||| || || |||| |||||||
Sbjct: 906 ttctgttgatgctaaaggggatcggcatagaattcacttgttctggtgaacagaaacctt 847
Query: 290 gcaccaactcgctttgccagacccaacatattcaaagttcccatgacatttgtcttgatc 349
|| |||| || |||||| |||||||||||||| | | | ||||| ||||||||||| ||
Sbjct: 846 gccccaattccctttgcgagacccaacatattgagaatgcccatcacatttgtcttcata 787
Query: 350 gtcttgattgggttatacttgtaatgaac 378
||||| | || |||||||||| ||||||
Sbjct: 786 gtcttaactgcattatacttgtcatgaac 758
>gb|AV551147.1|AV551147 AV551147 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ121h03R 5', mRNA sequence
Length = 344
Score = 63.9 bits (32), Expect = 5e-008
Identities = 131/164 (79%)
Strand = Plus / Minus
Query: 193 aacaccaataggattaacgtgcccccagtatgactccttctgtggatgctcaagtggatc 252
||||||||| |||||||||| |||||||| | ||| ||| ||||||| || |||||
Sbjct: 319 aacaccaatgggattaacgttgccccagtaagtctcaacctgaggatgctgcagaggatc 260
Query: 253 accataaacttcacttgtgctagtcaacaaaaaccttgcaccaactcgctttgccagacc 312
||||||||| ||||| || || |||| | ||| || || ||||||||||| |||| |||
Sbjct: 259 accataaacctcactggtactcgtcagaagaaatctagccccaactcgcttagccaaacc 200
Query: 313 caacatattcaaagttcccatgacatttgtcttgatcgtcttga 356
| ||| ||||| ||||| | ||||| |||||||| |||||||
Sbjct: 199 aagcatgttcaatgttccaaccacattcgtcttgatagtcttga 156
>emb|Z49239.1|ATD18MR A.thaliana mRNA for putative dTDP-glucose 4-6-dehydratases
Length = 1660
Score = 63.9 bits (32), Expect = 5e-008
Identities = 131/164 (79%)
Strand = Plus / Minus
Query: 193 aacaccaataggattaacgtgcccccagtatgactccttctgtggatgctcaagtggatc 252
||||||||| |||||||||| |||||||| | ||| ||| ||||||| || |||||
Sbjct: 910 aacaccaatgggattaacgttgccccagtaagtctcaacctgaggatgctgcagaggatc 851
Query: 253 accataaacttcacttgtgctagtcaacaaaaaccttgcaccaactcgctttgccagacc 312
||||||||| ||||| || || |||| | ||| || || ||||||||||| |||| |||
Sbjct: 850 accataaacctcactggtactcgtcagaagaaatctagccccaactcgcttagccaaacc 791
Query: 313 caacatattcaaagttcccatgacatttgtcttgatcgtcttga 356
| ||| ||||| ||||| | ||||| |||||||| |||||||
Sbjct: 790 aagcatgttcaatgttccaaccacattcgtcttgatagtcttga 747
>gb|AF361617.1| Arabidopsis thaliana AT3g62830/F26K9_260 mRNA, complete cds
Length = 1663
Score = 63.9 bits (32), Expect = 5e-008
Identities = 131/164 (79%)
Strand = Plus / Minus
Query: 193 aacaccaataggattaacgtgcccccagtatgactccttctgtggatgctcaagtggatc 252
||||||||| |||||||||| |||||||| | ||| ||| ||||||| || |||||
Sbjct: 924 aacaccaatgggattaacgttgccccagtaagtctcaacctgaggatgctgcagaggatc 865
Query: 253 accataaacttcacttgtgctagtcaacaaaaaccttgcaccaactcgctttgccagacc 312
||||||||| ||||| || || |||| | ||| || || ||||||||||| |||| |||
Sbjct: 864 accataaacctcactggtactcgtcagaagaaatctagccccaactcgcttagccaaacc 805
Query: 313 caacatattcaaagttcccatgacatttgtcttgatcgtcttga 356
| ||| ||||| ||||| | ||||| |||||||| |||||||
Sbjct: 804 aagcatgttcaatgttccaaccacattcgtcttgatagtcttga 761
>gb|AY143897.1| Arabidopsis thaliana At3g62830/F26K9_260 mRNA, complete cds
Length = 1338
Score = 63.9 bits (32), Expect = 5e-008
Identities = 131/164 (79%)
Strand = Plus / Minus
Query: 193 aacaccaataggattaacgtgcccccagtatgactccttctgtggatgctcaagtggatc 252
||||||||| |||||||||| |||||||| | ||| ||| ||||||| || |||||
Sbjct: 771 aacaccaatgggattaacgttgccccagtaagtctcaacctgaggatgctgcagaggatc 712
Query: 253 accataaacttcacttgtgctagtcaacaaaaaccttgcaccaactcgctttgccagacc 312
||||||||| ||||| || || |||| | ||| || || ||||||||||| |||| |||
Sbjct: 711 accataaacctcactggtactcgtcagaagaaatctagccccaactcgcttagccaaacc 652
Query: 313 caacatattcaaagttcccatgacatttgtcttgatcgtcttga 356
| ||| ||||| ||||| | ||||| |||||||| |||||||
Sbjct: 651 aagcatgttcaatgttccaaccacattcgtcttgatagtcttga 608
>gb|AF387788.1| Arabidopsis thaliana UDP-glucuronic acid decarboxylase (UXS2) mRNA,
complete cds
Length = 1338
Score = 63.9 bits (32), Expect = 5e-008
Identities = 131/164 (79%)
Strand = Plus / Minus
Query: 193 aacaccaataggattaacgtgcccccagtatgactccttctgtggatgctcaagtggatc 252
||||||||| |||||||||| |||||||| | ||| ||| ||||||| || |||||
Sbjct: 771 aacaccaatgggattaacgttgccccagtaagtctcaacctgaggatgctgcagaggatc 712
Query: 253 accataaacttcacttgtgctagtcaacaaaaaccttgcaccaactcgctttgccagacc 312
||||||||| ||||| || || |||| | ||| || || ||||||||||| |||| |||
Sbjct: 711 accataaacctcactggtactcgtcagaagaaatctagccccaactcgcttagccaaacc 652
Query: 313 caacatattcaaagttcccatgacatttgtcttgatcgtcttga 356
| ||| ||||| ||||| | ||||| |||||||| |||||||
Sbjct: 651 aagcatgttcaatgttccaaccacattcgtcttgatagtcttga 608
>ref|NM_116148.1| Arabidopsis thaliana UXS2 (UDP-GLUCURONIC ACID DECARBOXYLASE 2);
catalytic/ dTDP-glucose 4,6-dehydratase AT3G62830 (UXS2)
mRNA, complete cds
Length = 1338
Score = 63.9 bits (32), Expect = 5e-008
Identities = 131/164 (79%)
Strand = Plus / Minus
Query: 193 aacaccaataggattaacgtgcccccagtatgactccttctgtggatgctcaagtggatc 252
||||||||| |||||||||| |||||||| | ||| ||| ||||||| || |||||
Sbjct: 771 aacaccaatgggattaacgttgccccagtaagtctcaacctgaggatgctgcagaggatc 712
Query: 253 accataaacttcacttgtgctagtcaacaaaaaccttgcaccaactcgctttgccagacc 312
||||||||| ||||| || || |||| | ||| || || ||||||||||| |||| |||
Sbjct: 711 accataaacctcactggtactcgtcagaagaaatctagccccaactcgcttagccaaacc 652
Query: 313 caacatattcaaagttcccatgacatttgtcttgatcgtcttga 356
| ||| ||||| ||||| | ||||| |||||||| |||||||
Sbjct: 651 aagcatgttcaatgttccaaccacattcgtcttgatagtcttga 608
>gb|AQ964497.1|AQ964497 LERGW63TF LERG Arabidopsis thaliana genomic clone LERGW63, DNA
sequence
Length = 618
Score = 60.0 bits (30), Expect = 7e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 488 acgttctccttcctgccggtgaagaagttgtcgaccacgatcacgctgtc 537
|||||||| ||||| || |||||||| |||||||||||||||||| ||||
Sbjct: 442 acgttctctttccttcccgtgaagaaattgtcgaccacgatcacgttgtc 393
>gb|AV821940.1|AV821940 AV821940 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-18-J05 5',
mRNA sequence
Length = 684
Score = 60.0 bits (30), Expect = 7e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 488 acgttctccttcctgccggtgaagaagttgtcgaccacgatcacgctgtc 537
|||||||| ||||| || |||||||| |||||||||||||||||| ||||
Sbjct: 592 acgttctctttccttcccgtgaagaaattgtcgaccacgatcacgttgtc 543
>gb|CB264814.1|CB264814 33-E015022-035-004-A10-T7R MPIZ-ADIS-035 Arabidopsis thaliana cDNA
clone MPIZp2000A104Q 5-PRIME, mRNA sequence
Length = 582
Score = 60.0 bits (30), Expect = 7e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 488 acgttctccttcctgccggtgaagaagttgtcgaccacgatcacgctgtc 537
|||||||| ||||| || |||||||| |||||||||||||||||| ||||
Sbjct: 565 acgttctctttccttcccgtgaagaaattgtcgaccacgatcacgttgtc 516
>emb|AX505495.1| Sequence 190 from Patent WO0216655
Length = 1332
Score = 60.0 bits (30), Expect = 7e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 488 acgttctccttcctgccggtgaagaagttgtcgaccacgatcacgctgtc 537
|||||||| ||||| || |||||||| |||||||||||||||||| ||||
Sbjct: 482 acgttctctttccttcccgtgaagaaattgtcgaccacgatcacgttgtc 433
>gb|BV007525.1| MASC_STS15893 Arabidopsis thaliana (C24 accession) genomic DNA
Arabidopsis thaliana STS genomic, sequence tagged site
Length = 469
Score = 60.0 bits (30), Expect = 7e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 488 acgttctccttcctgccggtgaagaagttgtcgaccacgatcacgctgtc 537
|||||||| ||||| || |||||||| |||||||||||||||||| ||||
Sbjct: 253 acgttctctttccttcccgtgaagaaattgtcgaccacgatcacgttgtc 204
>gb|BV007526.1| MASC_STS15883 Arabidopsis thaliana (Yosemite-0 accession) genomic
DNA Arabidopsis thaliana STS genomic, sequence tagged
site
Length = 424
Score = 60.0 bits (30), Expect = 7e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 488 acgttctccttcctgccggtgaagaagttgtcgaccacgatcacgctgtc 537
|||||||| ||||| || |||||||| |||||||||||||||||| ||||
Sbjct: 261 acgttctctttccttcccgtgaagaaattgtcgaccacgatcacgttgtc 212
>gb|BV007652.1| MASC_STS15888 Arabidopsis thaliana (Konchezero accession) genomic
DNA Arabidopsis thaliana STS genomic, sequence tagged
site
Length = 470
Score = 60.0 bits (30), Expect = 7e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 488 acgttctccttcctgccggtgaagaagttgtcgaccacgatcacgctgtc 537
|||||||| ||||| || |||||||| |||||||||||||||||| ||||
Sbjct: 254 acgttctctttccttcccgtgaagaaattgtcgaccacgatcacgttgtc 205
>gb|BV008023.1| MASC_STS15892 Arabidopsis thaliana (Lezoux/Puy-de-Dome-0 accession)
genomic DNA Arabidopsis thaliana STS genomic, sequence
tagged site
Length = 393
Score = 60.0 bits (30), Expect = 7e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 488 acgttctccttcctgccggtgaagaagttgtcgaccacgatcacgctgtc 537
|||||||| ||||| || |||||||| |||||||||||||||||| ||||
Sbjct: 261 acgttctctttccttcccgtgaagaaattgtcgaccacgatcacgttgtc 212
>gb|BV008024.1| MASC_STS15890 Arabidopsis thaliana (Weiningen-0 accession) genomic
DNA Arabidopsis thaliana STS genomic, sequence tagged
site
Length = 568
Score = 60.0 bits (30), Expect = 7e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 488 acgttctccttcctgccggtgaagaagttgtcgaccacgatcacgctgtc 537
|||||||| ||||| || |||||||| |||||||||||||||||| ||||
Sbjct: 261 acgttctctttccttcccgtgaagaaattgtcgaccacgatcacgttgtc 212
>gb|BV008025.1| MASC_STS15886 Arabidopsis thaliana (Niederzenz-0 accession) genomic
DNA Arabidopsis thaliana STS genomic, sequence tagged
site
Length = 481
Score = 60.0 bits (30), Expect = 7e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 488 acgttctccttcctgccggtgaagaagttgtcgaccacgatcacgctgtc 537
|||||||| ||||| || |||||||| |||||||||||||||||| ||||
Sbjct: 262 acgttctctttccttcccgtgaagaaattgtcgaccacgatcacgttgtc 213
>gb|BV008026.1| MASC_STS15885 Arabidopsis thaliana (Gueckingen-0 accession) genomic
DNA Arabidopsis thaliana STS genomic, sequence tagged
site
Length = 534
Score = 60.0 bits (30), Expect = 7e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 488 acgttctccttcctgccggtgaagaagttgtcgaccacgatcacgctgtc 537
|||||||| ||||| || |||||||| |||||||||||||||||| ||||
Sbjct: 263 acgttctctttccttcccgtgaagaaattgtcgaccacgatcacgttgtc 214
>gb|AC002535.3| Arabidopsis thaliana chromosome 2 clone T30B22 map CIC06C03, complete
sequence
Length = 98937
Score = 60.0 bits (30), Expect = 7e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 488 acgttctccttcctgccggtgaagaagttgtcgaccacgatcacgctgtc 537
|||||||| ||||| || |||||||| |||||||||||||||||| ||||
Sbjct: 7757 acgttctctttccttcccgtgaagaaattgtcgaccacgatcacgttgtc 7708
>gb|AC005309.3| Arabidopsis thaliana chromosome 2 clone F17A22 map CIC06C03, complete
sequence
Length = 106355
Score = 60.0 bits (30), Expect = 7e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 488 acgttctccttcctgccggtgaagaagttgtcgaccacgatcacgctgtc 537
|||||||| ||||| || |||||||| |||||||||||||||||| ||||
Sbjct: 8319 acgttctctttccttcccgtgaagaaattgtcgaccacgatcacgttgtc 8368
>gb|BT022016.1| Arabidopsis thaliana At2g47650 gene, complete cds
Length = 1480
Score = 60.0 bits (30), Expect = 7e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 488 acgttctccttcctgccggtgaagaagttgtcgaccacgatcacgctgtc 537
|||||||| ||||| || |||||||| |||||||||||||||||| ||||
Sbjct: 494 acgttctctttccttcccgtgaagaaattgtcgaccacgatcacgttgtc 445
>ref|NM_130333.1| Arabidopsis thaliana UXS4 (UDP-XYLOSE SYNTHASE 4); catalytic
AT2G47650 (UXS4) mRNA, complete cds
Length = 1529
Score = 60.0 bits (30), Expect = 7e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 488 acgttctccttcctgccggtgaagaagttgtcgaccacgatcacgctgtc 537
|||||||| ||||| || |||||||| |||||||||||||||||| ||||
Sbjct: 575 acgttctctttccttcccgtgaagaaattgtcgaccacgatcacgttgtc 526
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 60.0 bits (30), Expect = 7e-007
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 488 acgttctccttcctgccggtgaagaagttgtcgaccacgatcacgctgtc 537
|||||||| ||||| || |||||||| |||||||||||||||||| ||||
Sbjct: 19547953 acgttctctttccttcccgtgaagaaattgtcgaccacgatcacgttgtc 19548002
>gb|AY050389.1| Arabidopsis thaliana AT3g62830/F26K9_260 mRNA, complete cds
Length = 1701
Score = 56.0 bits (28), Expect = 1e-005
Identities = 130/164 (79%)
Strand = Plus / Minus
Query: 193 aacaccaataggattaacgtgcccccagtatgactccttctgtggatgctcaagtggatc 252
||||||||| |||||||||| |||||||| | ||| ||| ||||||| || |||||
Sbjct: 924 aacaccaatgggattaacgttgccccagtaagtctcaacctgaggatgctgcagaggatc 865
Query: 253 accataaacttcacttgtgctagtcaacaaaaaccttgcaccaactcgctttgccagacc 312
||||||||| ||||| || || |||| | ||| || || ||||||||||| |||| |||
Sbjct: 864 accataaacctcactggtactcgtcagaagaaatctagccccaactcgcttagccaaacc 805
Query: 313 caacatattcaaagttcccatgacatttgtcttgatcgtcttga 356
| ||| ||| | ||||| | ||||| |||||||| |||||||
Sbjct: 804 aagcatgttctatgttccaaccacattcgtcttgatagtcttga 761
>gb|AI992875.1|AI992875 701493834 A. thaliana, Ohio State clone set Arabidopsis thaliana
cDNA clone 701493834, mRNA sequence
Length = 476
Score = 52.0 bits (26), Expect = 2e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 488 acgttctccttcctgccggtgaagaagttgtcgaccacgatcacgctgtc 537
|||| ||| ||||| || |||||||| |||||||||||||||||| ||||
Sbjct: 309 acgtactctttccttcccgtgaagaaattgtcgaccacgatcacgttgtc 260
>gb|BX839560.1|BX839560 BX839560 Arabidopsis thaliana Adult vegetative tissue Col-0
Arabidopsis thaliana cDNA clone GSLTLS49ZB08 5PRIM, mRNA
sequence
Length = 896
Score = 52.0 bits (26), Expect = 2e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 176 tcatcataacagctcctaacaccaat 201
||||||||||||||||||||||||||
Sbjct: 635 tcatcataacagctcctaacaccaat 610
>gb|CK121683.1|CK121683 202b24.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011B24202
5-PRIME, mRNA sequence
Length = 762
Score = 52.0 bits (26), Expect = 2e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 176 tcatcataacagctcctaacaccaat 201
||||||||||||||||||||||||||
Sbjct: 203 tcatcataacagctcctaacaccaat 178
>gb|AY072098.1| Arabidopsis thaliana putative dTDP-glucose 4-6-dehydratase
(At3g46440) mRNA, complete cds
Length = 1356
Score = 52.0 bits (26), Expect = 2e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 176 tcatcataacagctcctaacaccaat 201
||||||||||||||||||||||||||
Sbjct: 646 tcatcataacagctcctaacaccaat 621
>gb|AY096586.1| Arabidopsis thaliana putative dTDP-glucose 4-6-dehydratases
(At3g46440) mRNA, complete cds
Length = 1057
Score = 52.0 bits (26), Expect = 2e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 176 tcatcataacagctcctaacaccaat 201
||||||||||||||||||||||||||
Sbjct: 521 tcatcataacagctcctaacaccaat 496
>gb|AY087118.1| Arabidopsis thaliana clone 31901 mRNA, complete sequence
Length = 1281
Score = 52.0 bits (26), Expect = 2e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 176 tcatcataacagctcctaacaccaat 201
||||||||||||||||||||||||||
Sbjct: 582 tcatcataacagctcctaacaccaat 557
>emb|BX825822.1|CNS0A4P6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL65ZB07 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 923
Score = 52.0 bits (26), Expect = 2e-004
Identities = 110/138 (79%)
Strand = Plus / Minus
Query: 193 aacaccaataggattaacgtgcccccagtatgactccttctgtggatgctcaagtggatc 252
||||||||| |||||||||| |||||||| | ||| ||| ||||||| || |||||
Sbjct: 142 aacaccaatgggattaacgttgccccagtaagtctcaacctgaggatgctgcagaggatc 83
Query: 253 accataaacttcacttgtgctagtcaacaaaaaccttgcaccaactcgctttgccagacc 312
||||||||| ||||| || || |||| | ||| || || ||||||||||| |||| |||
Sbjct: 82 accataaacctcactggtactcgtcagaagaaatctagccccaactcgcttagccaaacc 23
Query: 313 caacatattcaaagttcc 330
| ||| ||||| |||||
Sbjct: 22 aagcatgttcaatgttcc 5
>emb|BX824968.1|CNS0A6QT Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH86ZD03 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1211
Score = 52.0 bits (26), Expect = 2e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 176 tcatcataacagctcctaacaccaat 201
||||||||||||||||||||||||||
Sbjct: 545 tcatcataacagctcctaacaccaat 520
>emb|BX823718.1|CNS0A7QP Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS6ZC01 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1114
Score = 52.0 bits (26), Expect = 2e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 176 tcatcataacagctcctaacaccaat 201
||||||||||||||||||||||||||
Sbjct: 470 tcatcataacagctcctaacaccaat 445
>ref|NM_114511.2| Arabidopsis thaliana UXS5; catalytic AT3G46440 (UXS5) transcript
variant AT3G46440.1 mRNA, complete cds
Length = 1374
Score = 52.0 bits (26), Expect = 2e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 176 tcatcataacagctcctaacaccaat 201
||||||||||||||||||||||||||
Sbjct: 646 tcatcataacagctcctaacaccaat 621
>ref|NM_001035743.1| Arabidopsis thaliana UXS5; catalytic AT3G46440 (UXS5) transcript
variant AT3G46440.2 mRNA, complete cds
Length = 1464
Score = 52.0 bits (26), Expect = 2e-004
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 176 tcatcataacagctcctaacaccaat 201
||||||||||||||||||||||||||
Sbjct: 736 tcatcataacagctcctaacaccaat 711
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 364,841
Number of Sequences: 1013581
Number of extensions: 364841
Number of successful extensions: 33662
Number of sequences better than 0.5: 65
Number of HSP's better than 0.5 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32941
Number of HSP's gapped (non-prelim): 720
length of query: 950
length of database: 908,940,872
effective HSP length: 20
effective length of query: 930
effective length of database: 888,669,252
effective search space: 826462404360
effective search space used: 826462404360
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)