BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3866402.2.1
(406 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AL944883.1| Arabidopsis thaliana T-DNA flanking sequenc... 50 3e-004
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 50 3e-004
emb|AL163527.1|ATF17J16 Arabidopsis thaliana DNA chromosome... 50 3e-004
ref|NM_115772.2| Arabidopsis thaliana ATGSL11 (GLUCAN SYNTH... 50 3e-004
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 50 3e-004
gb|AQ957761.1|AQ957761 LERAR55TF LERA Arabidopsis thaliana ... 42 0.072
gb|AC006436.5| Arabidopsis thaliana chromosome 2 clone F13J... 42 0.072
gb|AC007063.6| Arabidopsis thaliana chromosome 2 clone T10F... 42 0.072
tpg|BK001470.1| TPA: Arabidopsis thaliana callose synthase ... 42 0.072
gb|AY337762.1| Arabidopsis thaliana LAP1 (At2g13680) mRNA, ... 42 0.072
ref|NM_179622.2| Arabidopsis thaliana 1,3-beta-glucan synth... 42 0.072
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 42 0.072
gb|BZ663659.1|BZ663659 SALK_027262.35.85.x Arabidopsis thal... 40 0.28
gb|CL501716.1|CL501716 SAIL_702_D06.v1 SAIL Collection Arab... 40 0.28
>emb|AL944883.1| Arabidopsis thaliana T-DNA flanking sequence GK-285E05-015290,
genomic survey sequence
Length = 414
Score = 50.1 bits (25), Expect = 3e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 186 agagatttgaaggcctcggctaaatgcctgattaaaaagca 226
||||||||||||||||| |||||| || ||||| |||||||
Sbjct: 270 agagatttgaaggcctctgctaaaagcttgattgaaaagca 310
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 50.1 bits (25), Expect = 3e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 186 agagatttgaaggcctcggctaaatgcctgattaaaaagca 226
||||||||||||||||| |||||| || ||||| |||||||
Sbjct: 21812357 agagatttgaaggcctctgctaaaagcttgattgaaaagca 21812317
>emb|AL163527.1|ATF17J16 Arabidopsis thaliana DNA chromosome 3, BAC clone F17J16
Length = 89517
Score = 50.1 bits (25), Expect = 3e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 186 agagatttgaaggcctcggctaaatgcctgattaaaaagca 226
||||||||||||||||| |||||| || ||||| |||||||
Sbjct: 67043 agagatttgaaggcctctgctaaaagcttgattgaaaagca 67003
>ref|NM_115772.2| Arabidopsis thaliana ATGSL11 (GLUCAN SYNTHASE-LIKE 11);
1,3-beta-glucan synthase/ transferase, transferring
glycosyl groups AT3G59100 (ATGSL11) mRNA, complete cds
Length = 5805
Score = 50.1 bits (25), Expect = 3e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 186 agagatttgaaggcctcggctaaatgcctgattaaaaagca 226
||||||||||||||||| |||||| || ||||| |||||||
Sbjct: 5757 agagatttgaaggcctctgctaaaagcttgattgaaaagca 5717
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 50.1 bits (25), Expect = 3e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 186 agagatttgaaggcctcggctaaatgcctgattaaaaagca 226
||||||||||||||||| |||||| || ||||| |||||||
Sbjct: 21864789 agagatttgaaggcctctgctaaaagcttgattgaaaagca 21864749
>gb|AQ957761.1|AQ957761 LERAR55TF LERA Arabidopsis thaliana genomic clone LERAR55, DNA
sequence
Length = 668
Score = 42.1 bits (21), Expect = 0.072
Identities = 86/108 (79%)
Strand = Plus / Minus
Query: 234 ctggaactccgagacaaatgggaaccatgccagcacagccaccggnacgaagatgacaat 293
||||||||| ||||| || |||||||| || || |||| || || | |||||| ||||
Sbjct: 203 ctggaactcagagacgaaagggaaccacgcgagtacagtaactggcatgaagataacaac 144
Query: 294 ccccatcaggtactcataccccctagagagggccttcacggatcccca 341
||||| | |||||||||||| |||| | |||||| || ||||||||
Sbjct: 143 tcccatgatgtactcataccctctagccaaggccttgaccgatcccca 96
>gb|AC006436.5| Arabidopsis thaliana chromosome 2 clone F13J11 map mi398, complete
sequence
Length = 104009
Score = 42.1 bits (21), Expect = 0.072
Identities = 86/108 (79%)
Strand = Plus / Minus
Query: 234 ctggaactccgagacaaatgggaaccatgccagcacagccaccggnacgaagatgacaat 293
||||||||| ||||| || |||||||| || || |||| || || | |||||| ||||
Sbjct: 14278 ctggaactcagagacgaaagggaaccacgcgagtacagtaactggcatgaagataacaac 14219
Query: 294 ccccatcaggtactcataccccctagagagggccttcacggatcccca 341
||||| | |||||||||||| |||| | |||||| || ||||||||
Sbjct: 14218 tcccatgatgtactcataccctctagccaaggccttgaccgatcccca 14171
>gb|AC007063.6| Arabidopsis thaliana chromosome 2 clone T10F5 map PR1, complete
sequence
Length = 102585
Score = 42.1 bits (21), Expect = 0.072
Identities = 86/108 (79%)
Strand = Plus / Minus
Query: 234 ctggaactccgagacaaatgggaaccatgccagcacagccaccggnacgaagatgacaat 293
||||||||| ||||| || |||||||| || || |||| || || | |||||| ||||
Sbjct: 96480 ctggaactcagagacgaaagggaaccacgcgagtacagtaactggcatgaagataacaac 96421
Query: 294 ccccatcaggtactcataccccctagagagggccttcacggatcccca 341
||||| | |||||||||||| |||| | |||||| || ||||||||
Sbjct: 96420 tcccatgatgtactcataccctctagccaaggccttgaccgatcccca 96373
>tpg|BK001470.1| TPA: Arabidopsis thaliana callose synthase (LAP1) mRNA, complete cds
Length = 5772
Score = 42.1 bits (21), Expect = 0.072
Identities = 86/108 (79%)
Strand = Plus / Minus
Query: 234 ctggaactccgagacaaatgggaaccatgccagcacagccaccggnacgaagatgacaat 293
||||||||| ||||| || |||||||| || || |||| || || | |||||| ||||
Sbjct: 5691 ctggaactcagagacgaaagggaaccacgcgagtacagtaactggcatgaagataacaac 5632
Query: 294 ccccatcaggtactcataccccctagagagggccttcacggatcccca 341
||||| | |||||||||||| |||| | |||||| || ||||||||
Sbjct: 5631 tcccatgatgtactcataccctctagccaaggccttgaccgatcccca 5584
>gb|AY337762.1| Arabidopsis thaliana LAP1 (At2g13680) mRNA, complete cds
Length = 5950
Score = 42.1 bits (21), Expect = 0.072
Identities = 86/108 (79%)
Strand = Plus / Minus
Query: 234 ctggaactccgagacaaatgggaaccatgccagcacagccaccggnacgaagatgacaat 293
||||||||| ||||| || |||||||| || || |||| || || | |||||| ||||
Sbjct: 5844 ctggaactcagagacgaaagggaaccacgcgagtacagtaactggcatgaagataacaac 5785
Query: 294 ccccatcaggtactcataccccctagagagggccttcacggatcccca 341
||||| | |||||||||||| |||| | |||||| || ||||||||
Sbjct: 5784 tcccatgatgtactcataccctctagccaaggccttgaccgatcccca 5737
>ref|NM_179622.2| Arabidopsis thaliana 1,3-beta-glucan synthase AT2G13680 mRNA,
complete cds
Length = 5772
Score = 42.1 bits (21), Expect = 0.072
Identities = 86/108 (79%)
Strand = Plus / Minus
Query: 234 ctggaactccgagacaaatgggaaccatgccagcacagccaccggnacgaagatgacaat 293
||||||||| ||||| || |||||||| || || |||| || || | |||||| ||||
Sbjct: 5691 ctggaactcagagacgaaagggaaccacgcgagtacagtaactggcatgaagataacaac 5632
Query: 294 ccccatcaggtactcataccccctagagagggccttcacggatcccca 341
||||| | |||||||||||| |||| | |||||| || ||||||||
Sbjct: 5631 tcccatgatgtactcataccctctagccaaggccttgaccgatcccca 5584
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 42.1 bits (21), Expect = 0.072
Identities = 86/108 (79%)
Strand = Plus / Minus
Query: 234 ctggaactccgagacaaatgggaaccatgccagcacagccaccggnacgaagatgacaat 293
||||||||| ||||| || |||||||| || || |||| || || | |||||| ||||
Sbjct: 5713135 ctggaactcagagacgaaagggaaccacgcgagtacagtaactggcatgaagataacaac 5713076
Query: 294 ccccatcaggtactcataccccctagagagggccttcacggatcccca 341
||||| | |||||||||||| |||| | |||||| || ||||||||
Sbjct: 5713075 tcccatgatgtactcataccctctagccaaggccttgaccgatcccca 5713028
>gb|BZ663659.1|BZ663659 SALK_027262.35.85.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_027262.35.85.x,
DNA sequence
Length = 255
Score = 40.1 bits (20), Expect = 0.28
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 186 agagatttgaaggcctcggctaaa 209
||||||||||||||||| ||||||
Sbjct: 228 agagatttgaaggcctctgctaaa 251
>gb|CL501716.1|CL501716 SAIL_702_D06.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_702_D06.v1, DNA sequence
Length = 1012
Score = 40.1 bits (20), Expect = 0.28
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 18 tgtatacagccaagactctgaaag 41
|||||||||| |||||||||||||
Sbjct: 860 tgtatacagcgaagactctgaaag 837
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 162,868
Number of Sequences: 1013581
Number of extensions: 162868
Number of successful extensions: 11698
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11552
Number of HSP's gapped (non-prelim): 146
length of query: 406
length of database: 908,940,872
effective HSP length: 20
effective length of query: 386
effective length of database: 888,669,252
effective search space: 343026331272
effective search space used: 343026331272
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)