BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3858636.2.1
         (907 letters)

Database: At_nucl_with_EST.fasta 
           1,013,581 sequences; 908,940,872 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|U71080.1|ATU71080  Arabidopsis thaliana cinnamate-4-hydro...    44   0.042
emb|AX461326.1|  Sequence 255 from Patent WO0198480                44   0.042
gb|U93215.3|  Arabidopsis thaliana chromosome 2 BAC T6B20 ge...    44   0.042
dbj|D78597.1|  Arabidopsis thaliana DNA for trans-ciinamate ...    44   0.042
ref|NC_003071.3|  Arabidopsis thaliana chromosome 2, complet...    44   0.042

>gb|U71080.1|ATU71080 Arabidopsis thaliana cinnamate-4-hydroxylase (atC4H) gene, complete
            cds
          Length = 5432

 Score = 44.1 bits (22), Expect = 0.042
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 689  gaggaagaaataaagaagggag 710
            ||||||||||||||||||||||
Sbjct: 2867 gaggaagaaataaagaagggag 2846



>emb|AX461326.1| Sequence 255 from Patent WO0198480
          Length = 2004

 Score = 44.1 bits (22), Expect = 0.042
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 689  gaggaagaaataaagaagggag 710
            ||||||||||||||||||||||
Sbjct: 1916 gaggaagaaataaagaagggag 1895



>gb|U93215.3| Arabidopsis thaliana chromosome 2 BAC T6B20 genomic sequence, complete
             sequence
          Length = 104861

 Score = 44.1 bits (22), Expect = 0.042
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 689   gaggaagaaataaagaagggag 710
             ||||||||||||||||||||||
Sbjct: 57608 gaggaagaaataaagaagggag 57587



>dbj|D78597.1| Arabidopsis thaliana DNA for trans-ciinamate 4-hydroxylase, partial
           cds
          Length = 1202

 Score = 44.1 bits (22), Expect = 0.042
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 689 gaggaagaaataaagaagggag 710
           ||||||||||||||||||||||
Sbjct: 824 gaggaagaaataaagaagggag 803



>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
          Length = 19705359

 Score = 44.1 bits (22), Expect = 0.042
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 689      gaggaagaaataaagaagggag 710
                ||||||||||||||||||||||
Sbjct: 13002845 gaggaagaaataaagaagggag 13002866



  Database: At_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:09 PM
  Number of letters in database: 908,940,872
  Number of sequences in database:  1,013,581
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 365,115
Number of Sequences: 1013581
Number of extensions: 365115
Number of successful extensions: 26579
Number of sequences better than  0.5: 5
Number of HSP's better than  0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26429
Number of HSP's gapped (non-prelim): 150
length of query: 907
length of database: 908,940,872
effective HSP length: 20
effective length of query: 887
effective length of database: 888,669,252
effective search space: 788249626524
effective search space used: 788249626524
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)