BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3848767.2.1
(1467 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV440545.1|AV440545 AV440545 Arabidopsis thaliana above-... 46 0.017
gb|AV830274.1|AV830274 AV830274 RAFL9 Arabidopsis thaliana ... 44 0.068
gb|BP826157.1|BP826157 BP826157 RAFL19 Arabidopsis thaliana... 44 0.068
gb|BP829806.1|BP829806 BP829806 RAFL19 Arabidopsis thaliana... 44 0.068
gb|BP834551.1|BP834551 BP834551 RAFL19 Arabidopsis thaliana... 44 0.068
gb|AY099660.1| Arabidopsis thaliana putative chloroplast ou... 44 0.068
emb|AX651284.1| Sequence 68 from Patent WO03000898 44 0.068
gb|AC005825.4| Arabidopsis thaliana chromosome 2 clone T24I... 44 0.068
ref|NM_127216.3| Arabidopsis thaliana ATTOC132/TOC132; tran... 44 0.068
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 44 0.068
>gb|AV440545.1|AV440545 AV440545 Arabidopsis thaliana above-ground organ two to six-week old
Arabidopsis thaliana cDNA clone APD68a06_f 3', mRNA
sequence
Length = 383
Score = 46.1 bits (23), Expect = 0.017
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1174 tcctcctcctcctgctcatcatc 1196
|||||||||||||||||||||||
Sbjct: 78 tcctcctcctcctgctcatcatc 100
>gb|AV830274.1|AV830274 AV830274 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-66-D08 5', mRNA
sequence
Length = 578
Score = 44.1 bits (22), Expect = 0.068
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1174 tcctcctcctcctgctcatcat 1195
||||||||||||||||||||||
Sbjct: 257 tcctcctcctcctgctcatcat 236
>gb|BP826157.1|BP826157 BP826157 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-70-P18 5',
mRNA sequence
Length = 383
Score = 44.1 bits (22), Expect = 0.068
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1174 tcctcctcctcctgctcatcat 1195
||||||||||||||||||||||
Sbjct: 279 tcctcctcctcctgctcatcat 258
>gb|BP829806.1|BP829806 BP829806 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-83-E04 5',
mRNA sequence
Length = 366
Score = 44.1 bits (22), Expect = 0.068
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1174 tcctcctcctcctgctcatcat 1195
||||||||||||||||||||||
Sbjct: 279 tcctcctcctcctgctcatcat 258
>gb|BP834551.1|BP834551 BP834551 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-10-K12 5',
mRNA sequence
Length = 382
Score = 44.1 bits (22), Expect = 0.068
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1174 tcctcctcctcctgctcatcat 1195
||||||||||||||||||||||
Sbjct: 280 tcctcctcctcctgctcatcat 259
>gb|AY099660.1| Arabidopsis thaliana putative chloroplast outer membrane protein
(At2g16640) mRNA, complete cds
Length = 3951
Score = 44.1 bits (22), Expect = 0.068
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1174 tcctcctcctcctgctcatcat 1195
||||||||||||||||||||||
Sbjct: 256 tcctcctcctcctgctcatcat 235
>emb|AX651284.1| Sequence 68 from Patent WO03000898
Length = 3620
Score = 44.1 bits (22), Expect = 0.068
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1174 tcctcctcctcctgctcatcat 1195
||||||||||||||||||||||
Sbjct: 188 tcctcctcctcctgctcatcat 167
>gb|AC005825.4| Arabidopsis thaliana chromosome 2 clone T24I21 map mi398, complete
sequence
Length = 112792
Score = 44.1 bits (22), Expect = 0.068
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1174 tcctcctcctcctgctcatcat 1195
||||||||||||||||||||||
Sbjct: 19309 tcctcctcctcctgctcatcat 19330
>ref|NM_127216.3| Arabidopsis thaliana ATTOC132/TOC132; transmembrane receptor
AT2G16640 (ATTOC132/TOC132) mRNA, complete cds
Length = 3952
Score = 44.1 bits (22), Expect = 0.068
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1174 tcctcctcctcctgctcatcat 1195
||||||||||||||||||||||
Sbjct: 256 tcctcctcctcctgctcatcat 235
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 44.1 bits (22), Expect = 0.068
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1174 tcctcctcctcctgctcatcat 1195
||||||||||||||||||||||
Sbjct: 7222004 tcctcctcctcctgctcatcat 7222025
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 483,542
Number of Sequences: 1013581
Number of extensions: 483542
Number of successful extensions: 53668
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53427
Number of HSP's gapped (non-prelim): 234
length of query: 1467
length of database: 908,940,872
effective HSP length: 21
effective length of query: 1446
effective length of database: 887,655,671
effective search space: 1283550100266
effective search space used: 1283550100266
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)