BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3802485.2.1
         (1118 letters)

Database: At_nucl_with_EST.fasta 
           1,013,581 sequences; 908,940,872 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AY735522.1|  Arabidopsis thaliana hypothetical protein AT...    42   0.20 
ref|NM_102165.1|  Arabidopsis thaliana unknown protein AT1G2...    42   0.20 

>gb|AY735522.1| Arabidopsis thaliana hypothetical protein AT1G23170 mRNA, complete
            cds
          Length = 2352

 Score = 42.1 bits (21), Expect = 0.20
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 720  gagtgaaggctacagaaaggtttga 744
            |||||||||||||||| ||||||||
Sbjct: 1300 gagtgaaggctacagagaggtttga 1324



>ref|NM_102165.1| Arabidopsis thaliana unknown protein AT1G23170 mRNA, complete cds
          Length = 1710

 Score = 42.1 bits (21), Expect = 0.20
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 720  gagtgaaggctacagaaaggtttga 744
            |||||||||||||||| ||||||||
Sbjct: 1079 gagtgaaggctacagagaggtttga 1103



  Database: At_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:09 PM
  Number of letters in database: 908,940,872
  Number of sequences in database:  1,013,581
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 589,950
Number of Sequences: 1013581
Number of extensions: 589950
Number of successful extensions: 44171
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44166
Number of HSP's gapped (non-prelim): 5
length of query: 1118
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1098
effective length of database: 888,669,252
effective search space: 975758838696
effective search space used: 975758838696
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)