BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3802297.2.1
         (606 letters)

Database: At_nucl_with_EST.fasta 
           1,013,581 sequences; 908,940,872 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BP631976.1|BP631976  BP631976 RAFL17 Arabidopsis thaliana...    42   0.11 
dbj|BA000014.8|  Arabidopsis thaliana, chromosome 3, complet...    40   0.43 
emb|AL162459.2|ATF16L2  Arabidopsis thaliana DNA chromosome ...    40   0.43 
ref|NC_003074.4|  Arabidopsis thaliana chromosome 3, complet...    40   0.43 

>gb|BP631976.1|BP631976 BP631976 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-25-H22 3',
           mRNA sequence
          Length = 319

 Score = 42.1 bits (21), Expect = 0.11
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 338 gagagcttcatccagggccag 358
           |||||||||||||||||||||
Sbjct: 181 gagagcttcatccagggccag 201



>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
          Length = 23403063

 Score = 40.1 bits (20), Expect = 0.43
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 581      aattaactaatgtgaacact 600
                ||||||||||||||||||||
Sbjct: 16816262 aattaactaatgtgaacact 16816243



>emb|AL162459.2|ATF16L2 Arabidopsis thaliana DNA chromosome 3, BAC clone F16L2
          Length = 111338

 Score = 40.1 bits (20), Expect = 0.43
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 581   aattaactaatgtgaacact 600
             ||||||||||||||||||||
Sbjct: 48580 aattaactaatgtgaacact 48561



>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
          Length = 23470805

 Score = 40.1 bits (20), Expect = 0.43
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 581      aattaactaatgtgaacact 600
                ||||||||||||||||||||
Sbjct: 16863200 aattaactaatgtgaacact 16863181



  Database: At_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:09 PM
  Number of letters in database: 908,940,872
  Number of sequences in database:  1,013,581
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 183,577
Number of Sequences: 1013581
Number of extensions: 183577
Number of successful extensions: 11197
Number of sequences better than  0.5: 4
Number of HSP's better than  0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11080
Number of HSP's gapped (non-prelim): 117
length of query: 606
length of database: 908,940,872
effective HSP length: 20
effective length of query: 586
effective length of database: 888,669,252
effective search space: 520760181672
effective search space used: 520760181672
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)