BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3754578.2.1
(725 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AI999181.1|AI999181 701554812 A. thaliana, Columbia Col-... 44 0.033
emb|BX831498.1|CNS0A1N1 Arabidopsis thaliana Full-length cD... 44 0.033
dbj|AB020751.1| Arabidopsis thaliana genomic DNA, chromosom... 44 0.033
emb|CQ804810.1| Sequence 1221 from Patent WO2004035798 44 0.033
ref|NM_125657.3| Arabidopsis thaliana galactosyltransferase... 44 0.033
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 44 0.033
gb|AV811746.1|AV811746 AV811746 RAFL9 Arabidopsis thaliana ... 42 0.13
gb|AV544142.1|AV544142 AV544142 Arabidopsis thaliana roots ... 42 0.13
gb|AV563349.1|AV563349 AV563349 Arabidopsis thaliana green ... 42 0.13
gb|AY090451.1| Arabidopsis thaliana At1g74800/F25A4_38 mRNA... 42 0.13
gb|AC008263.2|F25A4 Arabidopsis thaliana chromosome 1 BAC F... 42 0.13
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 42 0.13
ref|NM_106138.2| Arabidopsis thaliana transferase, transfer... 42 0.13
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 42 0.13
>gb|AI999181.1|AI999181 701554812 A. thaliana, Columbia Col-0, rosette-3 Arabidopsis
thaliana cDNA clone 701554812, mRNA sequence
Length = 566
Score = 44.1 bits (22), Expect = 0.033
Identities = 61/74 (82%)
Strand = Plus / Plus
Query: 557 accaacttatcccacaagcacagcatctgcctgggtgactgatagtgggccgtgtagtag 616
|||| ||||||||||||||| | |||||| || || |||||||| || ||||| ||||
Sbjct: 195 accagcttatcccacaagcaaatcatctgtctcggcgactgataatgcgccgtcaagtaa 254
Query: 617 ttctccaggcaacc 630
||||| | ||||||
Sbjct: 255 ttctctatgcaacc 268
>emb|BX831498.1|CNS0A1N1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH11ZA04 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 2581
Score = 44.1 bits (22), Expect = 0.033
Identities = 61/74 (82%)
Strand = Plus / Minus
Query: 557 accaacttatcccacaagcacagcatctgcctgggtgactgatagtgggccgtgtagtag 616
|||| ||||||||||||||| | |||||| || || |||||||| || ||||| ||||
Sbjct: 2394 accagcttatcccacaagcaaatcatctgtctcggcgactgataatgcgccgtcaagtaa 2335
Query: 617 ttctccaggcaacc 630
||||| | ||||||
Sbjct: 2334 ttctctatgcaacc 2321
>dbj|AB020751.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MRG21
Length = 55151
Score = 44.1 bits (22), Expect = 0.033
Identities = 61/74 (82%)
Strand = Plus / Minus
Query: 557 accaacttatcccacaagcacagcatctgcctgggtgactgatagtgggccgtgtagtag 616
|||| ||||||||||||||| | |||||| || || |||||||| || ||||| ||||
Sbjct: 9514 accagcttatcccacaagcaaatcatctgtctcggcgactgataatgcgccgtcaagtaa 9455
Query: 617 ttctccaggcaacc 630
||||| | ||||||
Sbjct: 9454 ttctctatgcaacc 9441
>emb|CQ804810.1| Sequence 1221 from Patent WO2004035798
Length = 2046
Score = 44.1 bits (22), Expect = 0.033
Identities = 61/74 (82%)
Strand = Plus / Minus
Query: 557 accaacttatcccacaagcacagcatctgcctgggtgactgatagtgggccgtgtagtag 616
|||| ||||||||||||||| | |||||| || || |||||||| || ||||| ||||
Sbjct: 2009 accagcttatcccacaagcaaatcatctgtctcggcgactgataatgcgccgtcaagtaa 1950
Query: 617 ttctccaggcaacc 630
||||| | ||||||
Sbjct: 1949 ttctctatgcaacc 1936
>ref|NM_125657.3| Arabidopsis thaliana galactosyltransferase/ transferase, transferring
hexosyl groups AT5G62620 mRNA, complete cds
Length = 2589
Score = 44.1 bits (22), Expect = 0.033
Identities = 61/74 (82%)
Strand = Plus / Minus
Query: 557 accaacttatcccacaagcacagcatctgcctgggtgactgatagtgggccgtgtagtag 616
|||| ||||||||||||||| | |||||| || || |||||||| || ||||| ||||
Sbjct: 2394 accagcttatcccacaagcaaatcatctgtctcggcgactgataatgcgccgtcaagtaa 2335
Query: 617 ttctccaggcaacc 630
||||| | ||||||
Sbjct: 2334 ttctctatgcaacc 2321
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 44.1 bits (22), Expect = 0.033
Identities = 61/74 (82%)
Strand = Plus / Minus
Query: 557 accaacttatcccacaagcacagcatctgcctgggtgactgatagtgggccgtgtagtag 616
|||| ||||||||||||||| | |||||| || || |||||||| || ||||| ||||
Sbjct: 25156953 accagcttatcccacaagcaaatcatctgtctcggcgactgataatgcgccgtcaagtaa 25156894
Query: 617 ttctccaggcaacc 630
||||| | ||||||
Sbjct: 25156893 ttctctatgcaacc 25156880
>gb|AV811746.1|AV811746 AV811746 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-69-H18 3',
mRNA sequence
Length = 406
Score = 42.1 bits (21), Expect = 0.13
Identities = 66/81 (81%)
Strand = Plus / Plus
Query: 562 cttatcccacaagcacagcatctgcctgggtgactgatagtgggccgtgtagtagttctc 621
||||||||| ||||| | |||||| || || ||||| || || || ||||||||||||||
Sbjct: 295 cttatcccataagcatatcatctgtcttggcgactggtaatgagctgtgtagtagttctc 354
Query: 622 caggcaaccgtactggcagaa 642
| ||||| ||||||||||
Sbjct: 355 aacacaaccaaactggcagaa 375
>gb|AV544142.1|AV544142 AV544142 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ34e04F 3', mRNA sequence
Length = 635
Score = 42.1 bits (21), Expect = 0.13
Identities = 66/81 (81%)
Strand = Plus / Plus
Query: 562 cttatcccacaagcacagcatctgcctgggtgactgatagtgggccgtgtagtagttctc 621
||||||||| ||||| | |||||| || || ||||| || || || ||||||||||||||
Sbjct: 263 cttatcccataagcatatcatctgtcttggcgactggtaatgagctgtgtagtagttctc 322
Query: 622 caggcaaccgtactggcagaa 642
| ||||| ||||||||||
Sbjct: 323 aacacaaccaaactggcagaa 343
>gb|AV563349.1|AV563349 AV563349 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ185g10F 3', mRNA sequence
Length = 499
Score = 42.1 bits (21), Expect = 0.13
Identities = 66/81 (81%)
Strand = Plus / Plus
Query: 562 cttatcccacaagcacagcatctgcctgggtgactgatagtgggccgtgtagtagttctc 621
||||||||| ||||| | |||||| || || ||||| || || || ||||||||||||||
Sbjct: 294 cttatcccataagcatatcatctgtcttggcgactggtaatgagctgtgtagtagttctc 353
Query: 622 caggcaaccgtactggcagaa 642
| ||||| ||||||||||
Sbjct: 354 aacacaaccaaactggcagaa 374
>gb|AY090451.1| Arabidopsis thaliana At1g74800/F25A4_38 mRNA, complete cds
Length = 2391
Score = 42.1 bits (21), Expect = 0.13
Identities = 66/81 (81%)
Strand = Plus / Minus
Query: 562 cttatcccacaagcacagcatctgcctgggtgactgatagtgggccgtgtagtagttctc 621
||||||||| ||||| | |||||| || || ||||| || || || ||||||||||||||
Sbjct: 2096 cttatcccataagcatatcatctgtcttggcgactggtaatgagctgtgtagtagttctc 2037
Query: 622 caggcaaccgtactggcagaa 642
| ||||| ||||||||||
Sbjct: 2036 aacacaaccaaactggcagaa 2016
>gb|AC008263.2|F25A4 Arabidopsis thaliana chromosome 1 BAC F25A4 sequence, complete sequence
Length = 115721
Score = 42.1 bits (21), Expect = 0.13
Identities = 66/81 (81%)
Strand = Plus / Minus
Query: 562 cttatcccacaagcacagcatctgcctgggtgactgatagtgggccgtgtagtagttctc 621
||||||||| ||||| | |||||| || || ||||| || || || ||||||||||||||
Sbjct: 72767 cttatcccataagcatatcatctgtcttggcgactggtaatgagctgtgtagtagttctc 72708
Query: 622 caggcaaccgtactggcagaa 642
| ||||| ||||||||||
Sbjct: 72707 aacacaaccaaactggcagaa 72687
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 42.1 bits (21), Expect = 0.13
Identities = 66/81 (81%)
Strand = Plus / Plus
Query: 562 cttatcccacaagcacagcatctgcctgggtgactgatagtgggccgtgtagtagttctc 621
||||||||| ||||| | |||||| || || ||||| || || || ||||||||||||||
Sbjct: 12343582 cttatcccataagcatatcatctgtcttggcgactggtaatgagctgtgtagtagttctc 12343641
Query: 622 caggcaaccgtactggcagaa 642
| ||||| ||||||||||
Sbjct: 12343642 aacacaaccaaactggcagaa 12343662
>ref|NM_106138.2| Arabidopsis thaliana transferase, transferring glycosyl groups /
transferase, transferring hexosyl groups AT1G74800 mRNA,
complete cds
Length = 2391
Score = 42.1 bits (21), Expect = 0.13
Identities = 66/81 (81%)
Strand = Plus / Minus
Query: 562 cttatcccacaagcacagcatctgcctgggtgactgatagtgggccgtgtagtagttctc 621
||||||||| ||||| | |||||| || || ||||| || || || ||||||||||||||
Sbjct: 2096 cttatcccataagcatatcatctgtcttggcgactggtaatgagctgtgtagtagttctc 2037
Query: 622 caggcaaccgtactggcagaa 642
| ||||| ||||||||||
Sbjct: 2036 aacacaaccaaactggcagaa 2016
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 42.1 bits (21), Expect = 0.13
Identities = 66/81 (81%)
Strand = Plus / Plus
Query: 562 cttatcccacaagcacagcatctgcctgggtgactgatagtgggccgtgtagtagttctc 621
||||||||| ||||| | |||||| || || ||||| || || || ||||||||||||||
Sbjct: 28105924 cttatcccataagcatatcatctgtcttggcgactggtaatgagctgtgtagtagttctc 28105983
Query: 622 caggcaaccgtactggcagaa 642
| ||||| ||||||||||
Sbjct: 28105984 aacacaaccaaactggcagaa 28106004
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 345,260
Number of Sequences: 1013581
Number of extensions: 345260
Number of successful extensions: 23500
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23128
Number of HSP's gapped (non-prelim): 372
length of query: 725
length of database: 908,940,872
effective HSP length: 20
effective length of query: 705
effective length of database: 888,669,252
effective search space: 626511822660
effective search space used: 626511822660
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)