BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3748380.2.1
(1272 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BZ663057.1|BZ663057 SALK_026551.47.05.x Arabidopsis thal... 46 0.015
gb|BE038223.1|BE038223 AA10E11 AA Arabidopsis thaliana cDNA... 46 0.015
gb|DR750275.1|DR750275 65-L020098-065-001-A09-SeLA MPIZ-ADI... 46 0.015
gb|DR750276.1|DR750276 65-L020099-065-001-A09-SeLB MPIZ-ADI... 46 0.015
gb|AF211171.1|AF211171 Arabidopsis thaliana short vegetativ... 46 0.015
emb|AX052687.1| Sequence 1 from Patent WO0070053 46 0.015
emb|AX052689.1| Sequence 3 from Patent WO0070053 46 0.015
emb|AX052691.1| Sequence 5 from Patent WO0070053 46 0.015
emb|AX052692.1| Sequence 6 from Patent WO0070053 46 0.015
emb|AX052693.1| Sequence 7 from Patent WO0070053 46 0.015
emb|AX506507.1| Sequence 1202 from Patent WO0216655 46 0.015
gb|AC006592.6| Arabidopsis thaliana chromosome 2 clone F14M... 46 0.015
emb|BX842431.1|CNS0A8GM Arabidopsis thaliana Full-length cD... 46 0.015
emb|BX842440.1|CNS0A8OH Arabidopsis thaliana Full-length cD... 46 0.015
emb|BX842447.1|CNS0A8UX Arabidopsis thaliana Full-length cD... 46 0.015
emb|BX842456.1|CNS0A915 Arabidopsis thaliana Full-length cD... 46 0.015
ref|NM_127820.2| Arabidopsis thaliana SVP (SHORT VEGETATIVE... 46 0.015
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 46 0.015
gb|AY026995.1|AY026995 AY026995 Arabidopsis thaliana Landsb... 44 0.059
gb|AV822813.1|AV822813 AV822813 RAFL5 Arabidopsis thaliana ... 44 0.059
gb|CB258385.1|CB258385 30-E011801-014-004-K07-T7R MPIZ-ADIS... 44 0.059
gb|CB258393.1|CB258393 30-E011797-014-004-K07-T7R MPIZ-ADIS... 44 0.059
gb|BP827217.1|BP827217 BP827217 RAFL19 Arabidopsis thaliana... 44 0.059
gb|BP862618.1|BP862618 BP862618 RAFL21 Arabidopsis thaliana... 44 0.059
gb|DR750025.1|DR750025 78-L022242-065-008-F10-SeLA MPIZ-ADI... 44 0.059
gb|U33473.1|ATU33473 Arabidopsis thaliana agamous-like 8 (A... 44 0.059
gb|AF386929.1|AF386929 Arabidopsis thaliana floral homeotic... 44 0.059
gb|AY072463.1| Arabidopsis thaliana floral homeotic protein... 44 0.059
emb|AX590063.1| Sequence 245 from Patent WO02081695 44 0.059
emb|BX833510.1|CNS0A0IS Arabidopsis thaliana Full-length cD... 44 0.059
dbj|AB008269.1| Arabidopsis thaliana genomic DNA, chromosom... 44 0.059
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 44 0.059
ref|NM_125484.2| Arabidopsis thaliana AGL8 (AGAMOUS-LIKE 8)... 44 0.059
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 44 0.059
gb|AV828127.1|AV828127 AV828127 RAFL9 Arabidopsis thaliana ... 42 0.23
gb|BU636533.1|BU636533 006H08 Infected Arabidopsis Leaf Ara... 42 0.23
gb|BX837240.1|BX837240 BX837240 Arabidopsis thaliana Adult ... 42 0.23
gb|AV441647.1|AV441647 AV441647 Arabidopsis thaliana above-... 42 0.23
gb|DR750280.1|DR750280 63-L022242-065-008-G08-SeLA MPIZ-ADI... 42 0.23
gb|DR750712.1|DR750712 42-L022242-065-008-B06-SeLA MPIZ-ADI... 42 0.23
gb|DR750732.1|DR750732 43-L022242-065-008-C06-SeLA MPIZ-ADI... 42 0.23
gb|U81369.1|ATU81369 Arabidopsis thaliana MADS box protein ... 42 0.23
gb|AY063894.1| Arabidopsis thaliana putative MADS-box prote... 42 0.23
gb|AY096386.1| Arabidopsis thaliana putative MADS-box prote... 42 0.23
emb|AX507178.1| Sequence 1873 from Patent WO0216655 42 0.23
gb|AY141229.1| Arabidopsis thaliana MADS-box protein AGL3-I... 42 0.23
gb|AC006836.7| Arabidopsis thaliana chromosome 2 clone F19B... 42 0.23
emb|BX819695.1|CNS0A8HF Arabidopsis thaliana Full-length cD... 42 0.23
ref|NM_126418.1| Arabidopsis thaliana AGL3 (AGAMOUS-LIKE 3)... 42 0.23
ref|NM_179599.1| Arabidopsis thaliana AGL3 (AGAMOUS-LIKE 3)... 42 0.23
ref|NM_201682.1| Arabidopsis thaliana AGL3 (AGAMOUS-LIKE 3)... 42 0.23
>gb|BZ663057.1|BZ663057 SALK_026551.47.05.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_026551.47.05.x,
DNA sequence
Length = 426
Score = 46.1 bits (23), Expect = 0.015
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 1058 gagaagacgatgacggcgacctcggcgtcgcagaggacggaga 1100
||||||| ||||| ||||| |||||||||||||| |||||||
Sbjct: 157 gagaagatgatgagagcgacatcggcgtcgcagagaacggaga 115
>gb|BE038223.1|BE038223 AA10E11 AA Arabidopsis thaliana cDNA 5' similar to mads-box protein,
mRNA sequence
Length = 704
Score = 46.1 bits (23), Expect = 0.015
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 1058 gagaagacgatgacggcgacctcggcgtcgcagaggacggaga 1100
||||||| ||||| ||||| |||||||||||||| |||||||
Sbjct: 284 gagaagatgatgagagcgacatcggcgtcgcagagaacggaga 242
>gb|DR750275.1|DR750275 65-L020098-065-001-A09-SeLA MPIZ-ADIS-065d Arabidopsis thaliana cDNA
clone 001-A09, mRNA sequence
Length = 953
Score = 46.1 bits (23), Expect = 0.015
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 1058 gagaagacgatgacggcgacctcggcgtcgcagaggacggaga 1100
||||||| ||||| ||||| |||||||||||||| |||||||
Sbjct: 237 gagaagatgatgagagcgacatcggcgtcgcagagaacggaga 195
>gb|DR750276.1|DR750276 65-L020099-065-001-A09-SeLB MPIZ-ADIS-065d Arabidopsis thaliana cDNA
clone 001-A09, mRNA sequence
Length = 920
Score = 46.1 bits (23), Expect = 0.015
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 1058 gagaagacgatgacggcgacctcggcgtcgcagaggacggaga 1100
||||||| ||||| ||||| |||||||||||||| |||||||
Sbjct: 605 gagaagatgatgagagcgacatcggcgtcgcagagaacggaga 647
>gb|AF211171.1|AF211171 Arabidopsis thaliana short vegetative phase protein (SVP) mRNA,
complete cds
Length = 1518
Score = 46.1 bits (23), Expect = 0.015
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 1058 gagaagacgatgacggcgacctcggcgtcgcagaggacggaga 1100
||||||| ||||| ||||| |||||||||||||| |||||||
Sbjct: 675 gagaagatgatgagagcgacatcggcgtcgcagagaacggaga 633
>emb|AX052687.1| Sequence 1 from Patent WO0070053
Length = 1771
Score = 46.1 bits (23), Expect = 0.015
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 1058 gagaagacgatgacggcgacctcggcgtcgcagaggacggaga 1100
||||||| ||||| ||||| |||||||||||||| |||||||
Sbjct: 557 gagaagatgatgagagcgacatcggcgtcgcagagaacggaga 515
>emb|AX052689.1| Sequence 3 from Patent WO0070053
Length = 1368
Score = 46.1 bits (23), Expect = 0.015
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 1058 gagaagacgatgacggcgacctcggcgtcgcagaggacggaga 1100
||||||| ||||| ||||| |||||||||||||| |||||||
Sbjct: 564 gagaagatgatgagagcgacatcggcgtcgcagagaacggaga 522
>emb|AX052691.1| Sequence 5 from Patent WO0070053
Length = 2134
Score = 46.1 bits (23), Expect = 0.015
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 1058 gagaagacgatgacggcgacctcggcgtcgcagaggacggaga 1100
||||||| ||||| ||||| |||||||||||||| |||||||
Sbjct: 146 gagaagatgatgagagcgacatcggcgtcgcagagaacggaga 104
>emb|AX052692.1| Sequence 6 from Patent WO0070053
Length = 3184
Score = 46.1 bits (23), Expect = 0.015
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 1058 gagaagacgatgacggcgacctcggcgtcgcagaggacggaga 1100
||||||| ||||| ||||| |||||||||||||| |||||||
Sbjct: 146 gagaagatgatgagagcgacatcggcgtcgcagagaacggaga 104
>emb|AX052693.1| Sequence 7 from Patent WO0070053
Length = 10617
Score = 46.1 bits (23), Expect = 0.015
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 1058 gagaagacgatgacggcgacctcggcgtcgcagaggacggaga 1100
||||||| ||||| ||||| |||||||||||||| |||||||
Sbjct: 4905 gagaagatgatgagagcgacatcggcgtcgcagagaacggaga 4863
>emb|AX506507.1| Sequence 1202 from Patent WO0216655
Length = 633
Score = 46.1 bits (23), Expect = 0.015
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 1058 gagaagacgatgacggcgacctcggcgtcgcagaggacggaga 1100
||||||| ||||| ||||| |||||||||||||| |||||||
Sbjct: 146 gagaagatgatgagagcgacatcggcgtcgcagagaacggaga 104
>gb|AC006592.6| Arabidopsis thaliana chromosome 2 clone F14M13 map mi238, complete
sequence
Length = 106949
Score = 46.1 bits (23), Expect = 0.015
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 1058 gagaagacgatgacggcgacctcggcgtcgcagaggacggaga 1100
||||||| ||||| ||||| |||||||||||||| |||||||
Sbjct: 13724 gagaagatgatgagagcgacatcggcgtcgcagagaacggaga 13766
>emb|BX842431.1|CNS0A8GM Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS10ZE07 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1390
Score = 46.1 bits (23), Expect = 0.015
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 1058 gagaagacgatgacggcgacctcggcgtcgcagaggacggaga 1100
||||||| ||||| ||||| |||||||||||||| |||||||
Sbjct: 659 gagaagatgatgagagcgacatcggcgtcgcagagaacggaga 617
>emb|BX842440.1|CNS0A8OH Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH56ZH06 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1341
Score = 46.1 bits (23), Expect = 0.015
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 1058 gagaagacgatgacggcgacctcggcgtcgcagaggacggaga 1100
||||||| ||||| ||||| |||||||||||||| |||||||
Sbjct: 548 gagaagatgatgagagcgacatcggcgtcgcagagaacggaga 506
>emb|BX842447.1|CNS0A8UX Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB15ZD07 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1460
Score = 46.1 bits (23), Expect = 0.015
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 1058 gagaagacgatgacggcgacctcggcgtcgcagaggacggaga 1100
||||||| ||||| ||||| |||||||||||||| |||||||
Sbjct: 307 gagaagatgatgagagcgacatcggcgtcgcagagaacggaga 265
>emb|BX842456.1|CNS0A915 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH84ZA03 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1363
Score = 46.1 bits (23), Expect = 0.015
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 1058 gagaagacgatgacggcgacctcggcgtcgcagaggacggaga 1100
||||||| ||||| ||||| |||||||||||||| |||||||
Sbjct: 575 gagaagatgatgagagcgacatcggcgtcgcagagaacggaga 533
>ref|NM_127820.2| Arabidopsis thaliana SVP (SHORT VEGETATIVE PHASE); transcription
factor AT2G22540 (SVP) mRNA, complete cds
Length = 1546
Score = 46.1 bits (23), Expect = 0.015
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 1058 gagaagacgatgacggcgacctcggcgtcgcagaggacggaga 1100
||||||| ||||| ||||| |||||||||||||| |||||||
Sbjct: 686 gagaagatgatgagagcgacatcggcgtcgcagagaacggaga 644
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 46.1 bits (23), Expect = 0.015
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 1058 gagaagacgatgacggcgacctcggcgtcgcagaggacggaga 1100
||||||| ||||| ||||| |||||||||||||| |||||||
Sbjct: 9587642 gagaagatgatgagagcgacatcggcgtcgcagagaacggaga 9587600
Score = 42.1 bits (21), Expect = 0.23
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1160 atcttgttctctatccgcttcagct 1184
|||||||||||||||| ||||||||
Sbjct: 1129662 atcttgttctctatcctcttcagct 1129638
>gb|AY026995.1|AY026995 AY026995 Arabidopsis thaliana Landsberg DNA Arabidopsis thaliana
genomic, DNA sequence
Length = 444
Score = 44.1 bits (22), Expect = 0.059
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1160 atcttgttctctatccgcttcagctg 1185
|||||||||||||||| |||||||||
Sbjct: 138 atcttgttctctatcctcttcagctg 113
Score = 42.1 bits (21), Expect = 0.23
Identities = 66/81 (81%)
Strand = Plus / Minus
Query: 1041 agagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagaggacggaga 1100
|||| ||||| |||| ||||||||||||| || ||||| || |||||||| || ||||
Sbjct: 257 agagtttgcctttggaagagaagacgatgagagcaacctcagcatcgcagagaacagaga 198
Query: 1101 tctcgtgcgccttcttcagca 1121
|||| || || ||||| ||||
Sbjct: 197 tctcatgagctttcttgagca 177
>gb|AV822813.1|AV822813 AV822813 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-11-O24 5', mRNA
sequence
Length = 685
Score = 44.1 bits (22), Expect = 0.059
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1160 atcttgttctctatccgcttcagctg 1185
|||||||||||||||| |||||||||
Sbjct: 106 atcttgttctctatcctcttcagctg 81
Score = 42.1 bits (21), Expect = 0.23
Identities = 66/81 (81%)
Strand = Plus / Minus
Query: 1041 agagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagaggacggaga 1100
|||| ||||| |||| ||||||||||||| || ||||| || |||||||| || ||||
Sbjct: 225 agagtttgcctttggaagagaagacgatgagagcaacctcagcatcgcagagaacagaga 166
Query: 1101 tctcgtgcgccttcttcagca 1121
|||| || || ||||| ||||
Sbjct: 165 tctcatgagctttcttgagca 145
>gb|CB258385.1|CB258385 30-E011801-014-004-K07-T7R MPIZ-ADIS-014 Arabidopsis thaliana cDNA
clone MPIZp771K074Q 5-PRIME, mRNA sequence
Length = 543
Score = 44.1 bits (22), Expect = 0.059
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1160 atcttgttctctatccgcttcagctg 1185
|||||||||||||||| |||||||||
Sbjct: 143 atcttgttctctatcctcttcagctg 118
Score = 42.1 bits (21), Expect = 0.23
Identities = 66/81 (81%)
Strand = Plus / Minus
Query: 1041 agagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagaggacggaga 1100
|||| ||||| |||| ||||||||||||| || ||||| || |||||||| || ||||
Sbjct: 262 agagtttgcctttggaagagaagacgatgagagcaacctcagcatcgcagagaacagaga 203
Query: 1101 tctcgtgcgccttcttcagca 1121
|||| || || ||||| ||||
Sbjct: 202 tctcatgagctttcttgagca 182
>gb|CB258393.1|CB258393 30-E011797-014-004-K07-T7R MPIZ-ADIS-014 Arabidopsis thaliana cDNA
clone MPIZp771K074Q 5-PRIME, mRNA sequence
Length = 559
Score = 44.1 bits (22), Expect = 0.059
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1160 atcttgttctctatccgcttcagctg 1185
|||||||||||||||| |||||||||
Sbjct: 143 atcttgttctctatcctcttcagctg 118
Score = 42.1 bits (21), Expect = 0.23
Identities = 66/81 (81%)
Strand = Plus / Minus
Query: 1041 agagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagaggacggaga 1100
|||| ||||| |||| ||||||||||||| || ||||| || |||||||| || ||||
Sbjct: 262 agagtttgcctttggaagagaagacgatgagagcaacctcagcatcgcagagaacagaga 203
Query: 1101 tctcgtgcgccttcttcagca 1121
|||| || || ||||| ||||
Sbjct: 202 tctcatgagctttcttgagca 182
>gb|BP827217.1|BP827217 BP827217 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-74-M12 5',
mRNA sequence
Length = 376
Score = 44.1 bits (22), Expect = 0.059
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1160 atcttgttctctatccgcttcagctg 1185
|||||||||||||||| |||||||||
Sbjct: 93 atcttgttctctatcctcttcagctg 68
>gb|BP862618.1|BP862618 BP862618 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-63-N06 5',
mRNA sequence
Length = 374
Score = 44.1 bits (22), Expect = 0.059
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1160 atcttgttctctatccgcttcagctg 1185
|||||||||||||||| |||||||||
Sbjct: 175 atcttgttctctatcctcttcagctg 150
>gb|DR750025.1|DR750025 78-L022242-065-008-F10-SeLA MPIZ-ADIS-065d Arabidopsis thaliana cDNA
clone 008-F10, mRNA sequence
Length = 733
Score = 44.1 bits (22), Expect = 0.059
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1160 atcttgttctctatccgcttcagctg 1185
|||||||||||||||| |||||||||
Sbjct: 135 atcttgttctctatcctcttcagctg 110
Score = 42.1 bits (21), Expect = 0.23
Identities = 66/81 (81%)
Strand = Plus / Minus
Query: 1041 agagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagaggacggaga 1100
|||| ||||| |||| ||||||||||||| || ||||| || |||||||| || ||||
Sbjct: 254 agagtttgcctttggaagagaagacgatgagagcaacctcagcatcgcagagaacagaga 195
Query: 1101 tctcgtgcgccttcttcagca 1121
|||| || || ||||| ||||
Sbjct: 194 tctcatgagctttcttgagca 174
>gb|U33473.1|ATU33473 Arabidopsis thaliana agamous-like 8 (AGL8) mRNA, complete cds
Length = 1058
Score = 44.1 bits (22), Expect = 0.059
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1160 atcttgttctctatccgcttcagctg 1185
|||||||||||||||| |||||||||
Sbjct: 144 atcttgttctctatcctcttcagctg 119
Score = 42.1 bits (21), Expect = 0.23
Identities = 66/81 (81%)
Strand = Plus / Minus
Query: 1041 agagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagaggacggaga 1100
|||| ||||| |||| ||||||||||||| || ||||| || |||||||| || ||||
Sbjct: 263 agagtttgcctttggaagagaagacgatgagagcaacctcagcatcgcagagaacagaga 204
Query: 1101 tctcgtgcgccttcttcagca 1121
|||| || || ||||| ||||
Sbjct: 203 tctcatgagctttcttgagca 183
>gb|AF386929.1|AF386929 Arabidopsis thaliana floral homeotic protein AGL8 (MSL3.3) mRNA,
complete cds
Length = 1042
Score = 44.1 bits (22), Expect = 0.059
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1160 atcttgttctctatccgcttcagctg 1185
|||||||||||||||| |||||||||
Sbjct: 103 atcttgttctctatcctcttcagctg 78
Score = 42.1 bits (21), Expect = 0.23
Identities = 66/81 (81%)
Strand = Plus / Minus
Query: 1041 agagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagaggacggaga 1100
|||| ||||| |||| ||||||||||||| || ||||| || |||||||| || ||||
Sbjct: 222 agagtttgcctttggaagagaagacgatgagagcaacctcagcatcgcagagaacagaga 163
Query: 1101 tctcgtgcgccttcttcagca 1121
|||| || || ||||| ||||
Sbjct: 162 tctcatgagctttcttgagca 142
>gb|AY072463.1| Arabidopsis thaliana floral homeotic protein AGL8 (MSL3.3) mRNA,
complete cds
Length = 874
Score = 44.1 bits (22), Expect = 0.059
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1160 atcttgttctctatccgcttcagctg 1185
|||||||||||||||| |||||||||
Sbjct: 44 atcttgttctctatcctcttcagctg 19
Score = 42.1 bits (21), Expect = 0.23
Identities = 66/81 (81%)
Strand = Plus / Minus
Query: 1041 agagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagaggacggaga 1100
|||| ||||| |||| ||||||||||||| || ||||| || |||||||| || ||||
Sbjct: 163 agagtttgcctttggaagagaagacgatgagagcaacctcagcatcgcagagaacagaga 104
Query: 1101 tctcgtgcgccttcttcagca 1121
|||| || || ||||| ||||
Sbjct: 103 tctcatgagctttcttgagca 83
>emb|AX590063.1| Sequence 245 from Patent WO02081695
Length = 465
Score = 44.1 bits (22), Expect = 0.059
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1160 atcttgttctctatccgcttcagctg 1185
|||||||||||||||| |||||||||
Sbjct: 44 atcttgttctctatcctcttcagctg 19
Score = 42.1 bits (21), Expect = 0.23
Identities = 66/81 (81%)
Strand = Plus / Minus
Query: 1041 agagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagaggacggaga 1100
|||| ||||| |||| ||||||||||||| || ||||| || |||||||| || ||||
Sbjct: 163 agagtttgcctttggaagagaagacgatgagagcaacctcagcatcgcagagaacagaga 104
Query: 1101 tctcgtgcgccttcttcagca 1121
|||| || || ||||| ||||
Sbjct: 103 tctcatgagctttcttgagca 83
>emb|BX833510.1|CNS0A0IS Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL5ZA09 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 939
Score = 44.1 bits (22), Expect = 0.059
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1160 atcttgttctctatccgcttcagctg 1185
|||||||||||||||| |||||||||
Sbjct: 128 atcttgttctctatcctcttcagctg 103
>dbj|AB008269.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSL3
Length = 61634
Score = 44.1 bits (22), Expect = 0.059
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1160 atcttgttctctatccgcttcagctg 1185
|||||||||||||||| |||||||||
Sbjct: 16541 atcttgttctctatcctcttcagctg 16566
Score = 42.1 bits (21), Expect = 0.23
Identities = 66/81 (81%)
Strand = Plus / Plus
Query: 1041 agagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagaggacggaga 1100
|||| ||||| |||| ||||||||||||| || ||||| || |||||||| || ||||
Sbjct: 16422 agagtttgcctttggaagagaagacgatgagagcaacctcagcatcgcagagaacagaga 16481
Query: 1101 tctcgtgcgccttcttcagca 1121
|||| || || ||||| ||||
Sbjct: 16482 tctcatgagctttcttgagca 16502
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 44.1 bits (22), Expect = 0.059
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1160 atcttgttctctatccgcttcagctg 1185
|||||||||||||||| |||||||||
Sbjct: 21761283 atcttgttctctatcctcttcagctg 21761308
Score = 42.1 bits (21), Expect = 0.23
Identities = 66/81 (81%)
Strand = Plus / Plus
Query: 1041 agagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagaggacggaga 1100
|||| ||||| |||| ||||||||||||| || ||||| || |||||||| || ||||
Sbjct: 21761164 agagtttgcctttggaagagaagacgatgagagcaacctcagcatcgcagagaacagaga 21761223
Query: 1101 tctcgtgcgccttcttcagca 1121
|||| || || ||||| ||||
Sbjct: 21761224 tctcatgagctttcttgagca 21761244
>ref|NM_125484.2| Arabidopsis thaliana AGL8 (AGAMOUS-LIKE 8); transcription factor
AT5G60910 (AGL8) mRNA, complete cds
Length = 1083
Score = 44.1 bits (22), Expect = 0.059
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1160 atcttgttctctatccgcttcagctg 1185
|||||||||||||||| |||||||||
Sbjct: 144 atcttgttctctatcctcttcagctg 119
Score = 42.1 bits (21), Expect = 0.23
Identities = 66/81 (81%)
Strand = Plus / Minus
Query: 1041 agagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagaggacggaga 1100
|||| ||||| |||| ||||||||||||| || ||||| || |||||||| || ||||
Sbjct: 263 agagtttgcctttggaagagaagacgatgagagcaacctcagcatcgcagagaacagaga 204
Query: 1101 tctcgtgcgccttcttcagca 1121
|||| || || ||||| ||||
Sbjct: 203 tctcatgagctttcttgagca 183
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 44.1 bits (22), Expect = 0.059
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1160 atcttgttctctatccgcttcagctg 1185
|||||||||||||||| |||||||||
Sbjct: 24523196 atcttgttctctatcctcttcagctg 24523221
Score = 42.1 bits (21), Expect = 0.23
Identities = 66/81 (81%)
Strand = Plus / Plus
Query: 1041 agagcttgcccttgggggagaagacgatgacggcgacctcggcgtcgcagaggacggaga 1100
|||| ||||| |||| ||||||||||||| || ||||| || |||||||| || ||||
Sbjct: 24523077 agagtttgcctttggaagagaagacgatgagagcaacctcagcatcgcagagaacagaga 24523136
Query: 1101 tctcgtgcgccttcttcagca 1121
|||| || || ||||| ||||
Sbjct: 24523137 tctcatgagctttcttgagca 24523157
>gb|AV828127.1|AV828127 AV828127 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-24-D15 5', mRNA
sequence
Length = 477
Score = 42.1 bits (21), Expect = 0.23
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1160 atcttgttctctatccgcttcagct 1184
|||||||||||||||| ||||||||
Sbjct: 378 atcttgttctctatcctcttcagct 354
>gb|BU636533.1|BU636533 006H08 Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA
sequence
Length = 509
Score = 42.1 bits (21), Expect = 0.23
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1160 atcttgttctctatccgcttcagct 1184
|||||||||||||||| ||||||||
Sbjct: 376 atcttgttctctatcctcttcagct 352
>gb|BX837240.1|BX837240 BX837240 Arabidopsis thaliana Adult vegetative tissue Col-0
Arabidopsis thaliana cDNA clone GSLTLS82ZC01 5PRIM, mRNA
sequence
Length = 503
Score = 42.1 bits (21), Expect = 0.23
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1160 atcttgttctctatccgcttcagct 1184
|||||||||||||||| ||||||||
Sbjct: 366 atcttgttctctatcctcttcagct 342
>gb|AV441647.1|AV441647 AV441647 Arabidopsis thaliana above-ground organ two to six-week old
Arabidopsis thaliana cDNA clone APD16h03_r 5', mRNA
sequence
Length = 386
Score = 42.1 bits (21), Expect = 0.23
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1160 atcttgttctctatccgcttcagct 1184
|||||||||||||||| ||||||||
Sbjct: 352 atcttgttctctatcctcttcagct 328
>gb|DR750280.1|DR750280 63-L022242-065-008-G08-SeLA MPIZ-ADIS-065d Arabidopsis thaliana cDNA
clone 008-G08, mRNA sequence
Length = 620
Score = 42.1 bits (21), Expect = 0.23
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1160 atcttgttctctatccgcttcagct 1184
|||||||||||||||| ||||||||
Sbjct: 135 atcttgttctctatcctcttcagct 111
>gb|DR750712.1|DR750712 42-L022242-065-008-B06-SeLA MPIZ-ADIS-065d Arabidopsis thaliana cDNA
clone 008-B06, mRNA sequence
Length = 806
Score = 42.1 bits (21), Expect = 0.23
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1160 atcttgttctctatccgcttcagct 1184
|||||||||||||||| ||||||||
Sbjct: 135 atcttgttctctatcctcttcagct 111
>gb|DR750732.1|DR750732 43-L022242-065-008-C06-SeLA MPIZ-ADIS-065d Arabidopsis thaliana cDNA
clone 008-C06, mRNA sequence
Length = 804
Score = 42.1 bits (21), Expect = 0.23
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1160 atcttgttctctatccgcttcagct 1184
|||||||||||||||| ||||||||
Sbjct: 136 atcttgttctctatcctcttcagct 112
>gb|U81369.1|ATU81369 Arabidopsis thaliana MADS box protein (AGL3) mRNA, complete cds
Length = 1337
Score = 42.1 bits (21), Expect = 0.23
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1160 atcttgttctctatccgcttcagct 1184
|||||||||||||||| ||||||||
Sbjct: 398 atcttgttctctatcctcttcagct 374
>gb|AY063894.1| Arabidopsis thaliana putative MADS-box protein AGL3 (At2g03710) mRNA,
complete cds
Length = 1277
Score = 42.1 bits (21), Expect = 0.23
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1160 atcttgttctctatccgcttcagct 1184
|||||||||||||||| ||||||||
Sbjct: 377 atcttgttctctatcctcttcagct 353
>gb|AY096386.1| Arabidopsis thaliana putative MADS-box protein (AGL3) (At2g03710)
mRNA, complete cds
Length = 805
Score = 42.1 bits (21), Expect = 0.23
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1160 atcttgttctctatccgcttcagct 1184
|||||||||||||||| ||||||||
Sbjct: 44 atcttgttctctatcctcttcagct 20
>emb|AX507178.1| Sequence 1873 from Patent WO0216655
Length = 777
Score = 42.1 bits (21), Expect = 0.23
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1160 atcttgttctctatccgcttcagct 1184
|||||||||||||||| ||||||||
Sbjct: 44 atcttgttctctatcctcttcagct 20
>gb|AY141229.1| Arabidopsis thaliana MADS-box protein AGL3-II mRNA, complete cds
Length = 853
Score = 42.1 bits (21), Expect = 0.23
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1160 atcttgttctctatccgcttcagct 1184
|||||||||||||||| ||||||||
Sbjct: 44 atcttgttctctatcctcttcagct 20
>gb|AC006836.7| Arabidopsis thaliana chromosome 2 clone F19B11 map RNSI, complete
sequence
Length = 87543
Score = 42.1 bits (21), Expect = 0.23
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1160 atcttgttctctatccgcttcagct 1184
|||||||||||||||| ||||||||
Sbjct: 50812 atcttgttctctatcctcttcagct 50788
>emb|BX819695.1|CNS0A8HF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS18ZE06 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1238
Score = 42.1 bits (21), Expect = 0.23
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1160 atcttgttctctatccgcttcagct 1184
|||||||||||||||| ||||||||
Sbjct: 367 atcttgttctctatcctcttcagct 343
>ref|NM_126418.1| Arabidopsis thaliana AGL3 (AGAMOUS-LIKE 3); DNA binding /
transcription factor AT2G03710 (AGL3) transcript variant
AT2G03710.1 mRNA, complete cds
Length = 1337
Score = 42.1 bits (21), Expect = 0.23
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1160 atcttgttctctatccgcttcagct 1184
|||||||||||||||| ||||||||
Sbjct: 398 atcttgttctctatcctcttcagct 374
>ref|NM_179599.1| Arabidopsis thaliana AGL3 (AGAMOUS-LIKE 3); DNA binding /
transcription factor AT2G03710 (AGL3) transcript variant
AT2G03710.2 mRNA, complete cds
Length = 1261
Score = 42.1 bits (21), Expect = 0.23
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1160 atcttgttctctatccgcttcagct 1184
|||||||||||||||| ||||||||
Sbjct: 377 atcttgttctctatcctcttcagct 353
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 666,580
Number of Sequences: 1013581
Number of extensions: 666580
Number of successful extensions: 54257
Number of sequences better than 0.5: 51
Number of HSP's better than 0.5 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53215
Number of HSP's gapped (non-prelim): 1042
length of query: 1272
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1252
effective length of database: 888,669,252
effective search space: 1112613903504
effective search space used: 1112613903504
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)