BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3713091.2.1
(1013 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BP847856.1|BP847856 BP847856 RAFL21 Arabidopsis thaliana... 56 1e-005
emb|AL755221.1| Arabidopsis thaliana T-DNA flanking sequenc... 48 0.003
gb|T41741.1|T41741 10322 Lambda-PRL2 Arabidopsis thaliana c... 48 0.003
gb|H77120.1|H77120 17551 Lambda-PRL2 Arabidopsis thaliana c... 48 0.003
gb|AI992387.1|AI992387 701557609 A. thaliana, Ohio State cl... 48 0.003
gb|AV827714.1|AV827714 AV827714 RAFL9 Arabidopsis thaliana ... 48 0.003
gb|AF370480.1|AF370480 Arabidopsis thaliana similar to glut... 48 0.003
emb|AX507963.1| Sequence 2658 from Patent WO0216655 48 0.003
gb|AC007258.3| Arabidopsis thaliana chromosome I BAC F23H11... 48 0.003
gb|AC009317.4|AC009317 Genomic sequence for Arabidopsis tha... 48 0.003
gb|BT014880.1| Arabidopsis thaliana At1g59700 gene, complet... 48 0.003
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 48 0.003
ref|NM_104662.2| Arabidopsis thaliana ATGSTU16; glutathione... 48 0.003
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 48 0.003
gb|BP830615.1|BP830615 BP830615 RAFL19 Arabidopsis thaliana... 46 0.012
gb|AY084992.1| Arabidopsis thaliana clone 123761 mRNA, comp... 46 0.012
gb|BP851493.1|BP851493 BP851493 RAFL21 Arabidopsis thaliana... 44 0.047
>gb|BP847856.1|BP847856 BP847856 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-03-F23 5',
mRNA sequence
Length = 405
Score = 56.0 bits (28), Expect = 1e-005
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 222 caagagtgagctcctgctcaagtccaacccggtgcacaagaaggtgcccgtgctcatcca 281
|||||||||||| || ||||| || |||||||| |||||||| || ||||| ||| ||||
Sbjct: 192 caagagtgagcttcttctcaaatcaaacccggttcacaagaaagtccccgtcctcctcca 251
Query: 282 caac 285
||||
Sbjct: 252 caac 255
>emb|AL755221.1| Arabidopsis thaliana T-DNA flanking sequence GK-067H09-011693,
genomic survey sequence
Length = 247
Score = 48.1 bits (24), Expect = 0.003
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 222 caagagtgagctcctgctcaagtccaacccggtgcacaagaaggtgcccgtgctcatcca 281
|||||||||||| || ||||| || |||||||| |||||||| || || || ||| ||||
Sbjct: 161 caagagtgagcttcttctcaaatcaaacccggttcacaagaaagtccctgttctcctcca 102
Query: 282 caac 285
||||
Sbjct: 101 caac 98
>gb|T41741.1|T41741 10322 Lambda-PRL2 Arabidopsis thaliana cDNA clone 66E8T7, mRNA
sequence
Length = 429
Score = 48.1 bits (24), Expect = 0.003
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 222 caagagtgagctcctgctcaagtccaacccggtgcacaagaaggtgcccgtgctcatcca 281
|||||||||||| || ||||| || |||||||| |||||||| || || || ||| ||||
Sbjct: 118 caagagtgagcttcttctcaaatcaaacccggttcacaagaaagtccctgttctcctcca 177
Query: 282 caac 285
||||
Sbjct: 178 caac 181
>gb|H77120.1|H77120 17551 Lambda-PRL2 Arabidopsis thaliana cDNA clone 203G9T7, mRNA
sequence
Length = 496
Score = 48.1 bits (24), Expect = 0.003
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 222 caagagtgagctcctgctcaagtccaacccggtgcacaagaaggtgcccgtgctcatcca 281
|||||||||||| || ||||| || |||||||| |||||||| || || || ||| ||||
Sbjct: 137 caagagtgagcttcttctcaaatcaaacccggttcacaagaaagtccctgttctcctcca 196
Query: 282 caac 285
||||
Sbjct: 197 caac 200
>gb|AI992387.1|AI992387 701557609 A. thaliana, Ohio State clone set Arabidopsis thaliana
cDNA clone 701557609, mRNA sequence
Length = 581
Score = 48.1 bits (24), Expect = 0.003
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 222 caagagtgagctcctgctcaagtccaacccggtgcacaagaaggtgcccgtgctcatcca 281
|||||||||||| || ||||| || |||||||| |||||||| || || || ||| ||||
Sbjct: 137 caagagtgagcttcttctcaaatcaaacccggttcacaagaaagtccctgttctcctcca 196
Query: 282 caac 285
||||
Sbjct: 197 caac 200
>gb|AV827714.1|AV827714 AV827714 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-18-J05 5',
mRNA sequence
Length = 609
Score = 48.1 bits (24), Expect = 0.003
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 222 caagagtgagctcctgctcaagtccaacccggtgcacaagaaggtgcccgtgctcatcca 281
|||||||||||| || ||||| || |||||||| |||||||| || || || ||| ||||
Sbjct: 163 caagagtgagcttcttctcaaatcaaacccggttcacaagaaagtccctgttctcctcca 222
Query: 282 caac 285
||||
Sbjct: 223 caac 226
>gb|AF370480.1|AF370480 Arabidopsis thaliana similar to glutathione S-transferase
(T30E16.30) mRNA, complete cds
Length = 938
Score = 48.1 bits (24), Expect = 0.003
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 222 caagagtgagctcctgctcaagtccaacccggtgcacaagaaggtgcccgtgctcatcca 281
|||||||||||| || ||||| || |||||||| |||||||| || || || ||| ||||
Sbjct: 163 caagagtgagcttcttctcaaatcaaacccggttcacaagaaagtccctgttctcctcca 222
Query: 282 caac 285
||||
Sbjct: 223 caac 226
>emb|AX507963.1| Sequence 2658 from Patent WO0216655
Length = 705
Score = 48.1 bits (24), Expect = 0.003
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 222 caagagtgagctcctgctcaagtccaacccggtgcacaagaaggtgcccgtgctcatcca 281
|||||||||||| || ||||| || |||||||| |||||||| || || || ||| ||||
Sbjct: 126 caagagtgagcttcttctcaaatcaaacccggttcacaagaaagtccctgttctcctcca 185
Query: 282 caac 285
||||
Sbjct: 186 caac 189
>gb|AC007258.3| Arabidopsis thaliana chromosome I BAC F23H11 genomic sequence,
complete sequence
Length = 144422
Score = 48.1 bits (24), Expect = 0.003
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 222 caagagtgagctcctgctcaagtccaacccggtgcacaagaaggtgcccgtgctcatcca 281
|||||||||||| || ||||| || |||||||| |||||||| || || || ||| ||||
Sbjct: 2428 caagagtgagcttcttctcaaatcaaacccggttcacaagaaagtccctgttctcctcca 2487
Query: 282 caac 285
||||
Sbjct: 2488 caac 2491
>gb|AC009317.4|AC009317 Genomic sequence for Arabidopsis thaliana BAC T30E16 from chromosome I,
complete sequence
Length = 100008
Score = 48.1 bits (24), Expect = 0.003
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 222 caagagtgagctcctgctcaagtccaacccggtgcacaagaaggtgcccgtgctcatcca 281
|||||||||||| || ||||| || |||||||| |||||||| || || || ||| ||||
Sbjct: 85692 caagagtgagcttcttctcaaatcaaacccggttcacaagaaagtccctgttctcctcca 85751
Query: 282 caac 285
||||
Sbjct: 85752 caac 85755
>gb|BT014880.1| Arabidopsis thaliana At1g59700 gene, complete cds
Length = 705
Score = 48.1 bits (24), Expect = 0.003
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 222 caagagtgagctcctgctcaagtccaacccggtgcacaagaaggtgcccgtgctcatcca 281
|||||||||||| || ||||| || |||||||| |||||||| || || || ||| ||||
Sbjct: 126 caagagtgagcttcttctcaaatcaaacccggttcacaagaaagtccctgttctcctcca 185
Query: 282 caac 285
||||
Sbjct: 186 caac 189
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 48.1 bits (24), Expect = 0.003
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 222 caagagtgagctcctgctcaagtccaacccggtgcacaagaaggtgcccgtgctcatcca 281
|||||||||||| || ||||| || |||||||| |||||||| || || || ||| ||||
Sbjct: 6177900 caagagtgagcttcttctcaaatcaaacccggttcacaagaaagtccctgttctcctcca 6177959
Query: 282 caac 285
||||
Sbjct: 6177960 caac 6177963
>ref|NM_104662.2| Arabidopsis thaliana ATGSTU16; glutathione transferase AT1G59700
(ATGSTU16) mRNA, complete cds
Length = 931
Score = 48.1 bits (24), Expect = 0.003
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 222 caagagtgagctcctgctcaagtccaacccggtgcacaagaaggtgcccgtgctcatcca 281
|||||||||||| || ||||| || |||||||| |||||||| || || || ||| ||||
Sbjct: 156 caagagtgagcttcttctcaaatcaaacccggttcacaagaaagtccctgttctcctcca 215
Query: 282 caac 285
||||
Sbjct: 216 caac 219
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 48.1 bits (24), Expect = 0.003
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 222 caagagtgagctcctgctcaagtccaacccggtgcacaagaaggtgcccgtgctcatcca 281
|||||||||||| || ||||| || |||||||| |||||||| || || || ||| ||||
Sbjct: 21940249 caagagtgagcttcttctcaaatcaaacccggttcacaagaaagtccctgttctcctcca 21940308
Query: 282 caac 285
||||
Sbjct: 21940309 caac 21940312
>gb|BP830615.1|BP830615 BP830615 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-85-O19 5',
mRNA sequence
Length = 405
Score = 46.1 bits (23), Expect = 0.012
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 222 caagagtgagctcctgctcaagtccaacccggtgcacaagaaggtgcccgtgctcatcca 281
|||||||||||| || ||||| || |||||||| |||||||| || || || ||| ||||
Sbjct: 99 caagagtgagcttcttctcaaatcaaacccggttcacaagaaagtccctgttctcctcca 158
Query: 282 caa 284
|||
Sbjct: 159 caa 161
>gb|AY084992.1| Arabidopsis thaliana clone 123761 mRNA, complete sequence
Length = 866
Score = 46.1 bits (23), Expect = 0.012
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 223 aagagtgagctcctgctcaagtccaacccggtgcacaagaaggtgcccgtgctcatccac 282
||||||||||| || ||||| || |||||||| ||||||| || || || |||||||||
Sbjct: 152 aagagtgagcttcttctcaaatcgaacccggtttacaagaaagtcccggttctcatccac 211
Query: 283 aac 285
|||
Sbjct: 212 aac 214
>gb|BP851493.1|BP851493 BP851493 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-16-J21 5',
mRNA sequence
Length = 391
Score = 44.1 bits (22), Expect = 0.047
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 222 caagagtgagctcctgctcaagtccaacccggtgcacaagaa 263
|||||||||||| || ||||| || |||||||| ||||||||
Sbjct: 173 caagagtgagcttcttctcaaatcaaacccggttcacaagaa 214
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 405,675
Number of Sequences: 1013581
Number of extensions: 405675
Number of successful extensions: 33315
Number of sequences better than 0.5: 17
Number of HSP's better than 0.5 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32942
Number of HSP's gapped (non-prelim): 373
length of query: 1013
length of database: 908,940,872
effective HSP length: 20
effective length of query: 993
effective length of database: 888,669,252
effective search space: 882448567236
effective search space used: 882448567236
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)