BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3712967.2.1
(571 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BP595440.1|BP595440 BP595440 RAFL15 Arabidopsis thaliana... 48 0.002
gb|BP598811.1|BP598811 BP598811 RAFL16 Arabidopsis thaliana... 48 0.002
gb|BP600162.1|BP600162 BP600162 RAFL16 Arabidopsis thaliana... 48 0.002
gb|BP606373.1|BP606373 BP606373 RAFL16 Arabidopsis thaliana... 48 0.002
gb|BP610987.1|BP610987 BP610987 RAFL16 Arabidopsis thaliana... 48 0.002
gb|BP612216.1|BP612216 BP612216 RAFL16 Arabidopsis thaliana... 48 0.002
gb|BP615003.1|BP615003 BP615003 RAFL16 Arabidopsis thaliana... 48 0.002
gb|BP615005.1|BP615005 BP615005 RAFL16 Arabidopsis thaliana... 48 0.002
gb|AC006224.4| Arabidopsis thaliana chromosome 2 clone MFL8... 48 0.002
emb|BX819811.1|CNS0A7ZT Arabidopsis thaliana Full-length cD... 48 0.002
emb|BX821476.1|CNS0A808 Arabidopsis thaliana Full-length cD... 48 0.002
gb|BT023433.1| Arabidopsis thaliana At2g43050 gene, complet... 48 0.002
ref|NM_129866.3| Arabidopsis thaliana enzyme inhibitor/ pec... 48 0.002
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 48 0.002
gb|BP601630.1|BP601630 BP601630 RAFL16 Arabidopsis thaliana... 46 0.007
gb|B10245.1|B10245 F26L5-T7 IGF Arabidopsis thaliana genomi... 42 0.10
gb|AQ010631.1|AQ010631 F26L5TFB IGF Arabidopsis thaliana ge... 42 0.10
gb|BH242028.1|BH242028 ATYQD11TR ATYQ Arabidopsis thaliana ... 42 0.10
gb|AV781599.1|AV781599 AV781599 RAFL3 Arabidopsis thaliana ... 42 0.10
gb|AV785040.1|AV785040 AV785040 RAFL6 Arabidopsis thaliana ... 42 0.10
gb|AV795576.1|AV795576 AV795576 RAFL8 Arabidopsis thaliana ... 42 0.10
gb|AU239134.1|AU239134 AU239134 RAFL19 Arabidopsis thaliana... 42 0.10
gb|AV545230.1|AV545230 AV545230 Arabidopsis thaliana roots ... 42 0.10
gb|AV553478.1|AV553478 AV553478 Arabidopsis thaliana roots ... 42 0.10
gb|CK119593.1|CK119593 211j17.p1 AtM1 Arabidopsis thaliana ... 42 0.10
gb|BP596102.1|BP596102 BP596102 RAFL15 Arabidopsis thaliana... 42 0.10
gb|BP606140.1|BP606140 BP606140 RAFL16 Arabidopsis thaliana... 42 0.10
gb|BP606605.1|BP606605 BP606605 RAFL16 Arabidopsis thaliana... 42 0.10
gb|DR750101.1|DR750101 71-L021844-065-006-D12S-SeLA MPIZ-AD... 42 0.10
gb|U25649.1|ATU25649 Arabidopsis thaliana putative pectin m... 42 0.10
gb|AF152555.1|AF152555 Arabidopsis thaliana putative zinc f... 42 0.10
gb|AY054197.1| Arabidopsis thaliana At1g53840/T18A20_7 mRNA... 42 0.10
gb|AF378782.1| Arabidopsis thaliana SEUSS transcriptional c... 42 0.10
emb|AX544407.1| Sequence 60 from Patent WO02066660 42 0.10
gb|AY088104.1| Arabidopsis thaliana clone 41374 mRNA, compl... 42 0.10
gb|AC009324.2| Arabidopsis thaliana chromosome I BAC T18A20... 42 0.10
gb|AC006423.7|AC006423 Arabidopsis thaliana chromosome I BA... 42 0.10
emb|BX832484.1|CNS0A109 Arabidopsis thaliana Full-length cD... 42 0.10
dbj|AB022211.1| Arabidopsis thaliana genomic DNA, chromosom... 42 0.10
dbj|AK118277.1| Arabidopsis thaliana At1g43850 mRNA for unk... 42 0.10
emb|CQ803912.1| Sequence 323 from Patent WO2004035798 42 0.10
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 42 0.10
emb|X81585.1|ATPME1 A.thaliana mRNA for pectin methylesterase 42 0.10
emb|CS138000.1| Sequence 971 from Patent WO2005047516 42 0.10
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 42 0.10
ref|NM_126033.1| Arabidopsis thaliana SHI (SHORT INTERNODES... 42 0.10
ref|NM_103511.3| Arabidopsis thaliana SEU (SEUSS); transcri... 42 0.10
ref|NM_104261.2| Arabidopsis thaliana ATPME1; pectinesteras... 42 0.10
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 42 0.10
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 42 0.10
emb|AL751976.1| Arabidopsis thaliana T-DNA flanking sequenc... 40 0.40
emb|BX531844.1| Arabidopsis thaliana T-DNA flanking sequenc... 40 0.40
gb|CW840299.1|CW840299 GT9784.Ds5.10.17.2002.jw66.734 Arabi... 40 0.40
gb|BE662772.1|BE662772 EST00523 Arabidopsis Chronic Ozone F... 40 0.40
gb|BE662781.1|BE662781 EST00533 Arabidopsis Chronic Ozone F... 40 0.40
gb|AV824458.1|AV824458 AV824458 RAFL6 Arabidopsis thaliana ... 40 0.40
gb|AV828172.1|AV828172 AV828172 RAFL9 Arabidopsis thaliana ... 40 0.40
gb|AV829987.1|AV829987 AV829987 RAFL9 Arabidopsis thaliana ... 40 0.40
gb|CB185588.1|CB185588 EST00511 Arabidopsis avirulent Pseud... 40 0.40
gb|BX837761.1|BX837761 BX837761 Arabidopsis thaliana Hormon... 40 0.40
gb|BX839513.1|BX839513 BX839513 Arabidopsis thaliana Adult ... 40 0.40
gb|AV530124.1|AV530124 AV530124 Arabidopsis thaliana aboveg... 40 0.40
gb|AV541199.1|AV541199 AV541199 Arabidopsis thaliana roots ... 40 0.40
gb|AV558709.1|AV558709 AV558709 Arabidopsis thaliana green ... 40 0.40
gb|AV563205.1|AV563205 AV563205 Arabidopsis thaliana green ... 40 0.40
gb|BP566520.1|BP566520 BP566520 RAFL14 Arabidopsis thaliana... 40 0.40
gb|BP568985.1|BP568985 BP568985 RAFL14 Arabidopsis thaliana... 40 0.40
gb|BP570006.1|BP570006 BP570006 RAFL14 Arabidopsis thaliana... 40 0.40
gb|BP570024.1|BP570024 BP570024 RAFL14 Arabidopsis thaliana... 40 0.40
gb|BP599282.1|BP599282 BP599282 RAFL16 Arabidopsis thaliana... 40 0.40
gb|BP601277.1|BP601277 BP601277 RAFL16 Arabidopsis thaliana... 40 0.40
gb|BP612413.1|BP612413 BP612413 RAFL16 Arabidopsis thaliana... 40 0.40
gb|BP619400.1|BP619400 BP619400 RAFL16 Arabidopsis thaliana... 40 0.40
gb|BP645270.1|BP645270 BP645270 RAFL19 Arabidopsis thaliana... 40 0.40
gb|BP810929.1|BP810929 BP810929 RAFL16 Arabidopsis thaliana... 40 0.40
gb|DR750568.1|DR750568 50-L021127-065-005-B07-SeLA MPIZ-ADI... 40 0.40
gb|DR750716.1|DR750716 42-L022529-065-010-B06-SeLA MPIZ-ADI... 40 0.40
emb|X61031.1|ATPOSF21 A.thaliana posF21 gene 40 0.40
gb|AF027620.1|AF027620 Arabidopsis thaliana ecotype Ler-0 m... 40 0.40
gb|AF027621.1|AF027621 Arabidopsis thaliana ecotype Ag-0 mi... 40 0.40
gb|AF027622.1|AF027622 Arabidopsis thaliana ecotype Ag-0 mi... 40 0.40
gb|AF027623.1|AF027623 Arabidopsis thaliana ecotype Bur-0 m... 40 0.40
gb|AF027624.1|AF027624 Arabidopsis thaliana ecotype Bur-0 m... 40 0.40
gb|AF027625.1|AF027625 Arabidopsis thaliana ecotype Cen-0 m... 40 0.40
gb|AF027626.1|AF027626 Arabidopsis thaliana ecotype Ka-0 mi... 40 0.40
gb|AF277458.1|AF277458 Arabidopsis thaliana LEUNIG (LEUNIG)... 40 0.40
gb|AF353094.1|AF353094 Arabidopsis thaliana BEL1-like homeo... 40 0.40
gb|AY057534.1| Arabidopsis thaliana At2g31370/T28P16.14 mRN... 40 0.40
gb|AF272747.1|AF272747 Arabidopsis thaliana WRKY DNA-bindin... 40 0.40
gb|AY099854.1| Arabidopsis thaliana putative homeodomain tr... 40 0.40
gb|AY113058.1| Arabidopsis thaliana At2g31370/T28P16.14 mRN... 40 0.40
gb|AY136441.1| Arabidopsis thaliana expressed protein (At2g... 40 0.40
gb|AY072175.1| Arabidopsis thaliana putative homeodomain tr... 40 0.40
gb|AY096548.1| Arabidopsis thaliana putative homeodomain tr... 40 0.40
gb|BT000231.1| Arabidopsis thaliana expressed protein (At2g... 40 0.40
emb|AX506532.1| Sequence 1227 from Patent WO0216655 40 0.40
emb|AX506642.1| Sequence 1337 from Patent WO0216655 40 0.40
emb|AX506704.1| Sequence 1399 from Patent WO0216655 40 0.40
emb|AX651539.1| Sequence 346 from Patent WO03000898 40 0.40
gb|AY084821.1| Arabidopsis thaliana clone 118696 mRNA, comp... 40 0.40
gb|BT008422.1| Arabidopsis thaliana At2g35940 gene, complet... 40 0.40
gb|AC004665.3| Arabidopsis thaliana chromosome 2 clone F4I1... 40 0.40
gb|AC005397.3| Arabidopsis thaliana chromosome 2 clone T3F1... 40 0.40
gb|AC007017.4| Arabidopsis thaliana chromosome 2 clone F11F... 40 0.40
gb|AC007169.8| Arabidopsis thaliana chromosome 2 clone T28P... 40 0.40
gb|U93215.3| Arabidopsis thaliana chromosome 2 BAC T6B20 ge... 40 0.40
emb|BX823378.1|CNS0A6OU Arabidopsis thaliana Full-length cD... 40 0.40
emb|BX822397.1|CNS0A713 Arabidopsis thaliana Full-length cD... 40 0.40
emb|BX823333.1|CNS0A7B8 Arabidopsis thaliana Full-length cD... 40 0.40
emb|BX820030.1|CNS0AA0R Arabidopsis thaliana Full-length cD... 40 0.40
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 40 0.40
dbj|AP000419.1| Arabidopsis thaliana genomic DNA, chromosom... 40 0.40
emb|CQ803604.1| Sequence 15 from Patent WO2004035798 40 0.40
emb|CQ804046.1| Sequence 457 from Patent WO2004035798 40 0.40
emb|AJ703891.1| Arabidopsis thaliana mRNA for putative SNF2... 40 0.40
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 40 0.40
emb|AL050398.1|ATL23H3 Arabidopsis thaliana DNA chromosome ... 40 0.40
emb|AL161581.2|ATCHRIV77 Arabidopsis thaliana DNA chromosom... 40 0.40
dbj|AK221821.1| Arabidopsis thaliana mRNA for hypothetical ... 40 0.40
ref|NM_128694.1| Arabidopsis thaliana DNA binding / transcr... 40 0.40
ref|NM_128611.2| Arabidopsis thaliana WRKY21; transcription... 40 0.40
ref|NM_112800.2| Arabidopsis thaliana ATRBP47B; RNA binding... 40 0.40
ref|NM_129153.2| Arabidopsis thaliana BLH1 (BEL1-like homeo... 40 0.40
ref|NM_179925.1| Arabidopsis thaliana BLH1 (BEL1-like homeo... 40 0.40
ref|NM_119407.2| Arabidopsis thaliana LUG (LEUNIG) AT4G3255... 40 0.40
ref|NM_130165.2| Arabidopsis thaliana ATP binding / ATP-dep... 40 0.40
ref|NM_201966.1| Arabidopsis thaliana ATP binding / ATP-dep... 40 0.40
ref|NM_001036379.1| Arabidopsis thaliana DNA binding / tran... 40 0.40
ref|NM_001036413.1| Arabidopsis thaliana BLH1 (BEL1-like ho... 40 0.40
ref|NM_179836.2| Arabidopsis thaliana DNA binding / transcr... 40 0.40
ref|NM_179837.2| Arabidopsis thaliana DNA binding / transcr... 40 0.40
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 40 0.40
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 40 0.40
>gb|BP595440.1|BP595440 BP595440 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-30-B13 3',
mRNA sequence
Length = 452
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 86 cggccgtggaaggagttcgcgaggacggtggtgatg 121
|||||||||||||||| |||||||||||||||||
Sbjct: 418 cggccgtggaaggagtattcgaggacggtggtgatg 383
>gb|BP598811.1|BP598811 BP598811 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-04-L18 3',
mRNA sequence
Length = 440
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 86 cggccgtggaaggagttcgcgaggacggtggtgatg 121
|||||||||||||||| |||||||||||||||||
Sbjct: 421 cggccgtggaaggagtattcgaggacggtggtgatg 386
>gb|BP600162.1|BP600162 BP600162 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-44-P08 3',
mRNA sequence
Length = 433
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 86 cggccgtggaaggagttcgcgaggacggtggtgatg 121
|||||||||||||||| |||||||||||||||||
Sbjct: 420 cggccgtggaaggagtattcgaggacggtggtgatg 385
>gb|BP606373.1|BP606373 BP606373 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-70-K20 3',
mRNA sequence
Length = 436
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 86 cggccgtggaaggagttcgcgaggacggtggtgatg 121
|||||||||||||||| |||||||||||||||||
Sbjct: 418 cggccgtggaaggagtattcgaggacggtggtgatg 383
>gb|BP610987.1|BP610987 BP610987 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-84-C11 3',
mRNA sequence
Length = 429
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 86 cggccgtggaaggagttcgcgaggacggtggtgatg 121
|||||||||||||||| |||||||||||||||||
Sbjct: 419 cggccgtggaaggagtattcgaggacggtggtgatg 384
>gb|BP612216.1|BP612216 BP612216 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-88-K17 3',
mRNA sequence
Length = 439
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 86 cggccgtggaaggagttcgcgaggacggtggtgatg 121
|||||||||||||||| |||||||||||||||||
Sbjct: 374 cggccgtggaaggagtattcgaggacggtggtgatg 339
>gb|BP615003.1|BP615003 BP615003 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-13-H02 3',
mRNA sequence
Length = 470
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 86 cggccgtggaaggagttcgcgaggacggtggtgatg 121
|||||||||||||||| |||||||||||||||||
Sbjct: 469 cggccgtggaaggagtattcgaggacggtggtgatg 434
>gb|BP615005.1|BP615005 BP615005 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-13-H05 3',
mRNA sequence
Length = 485
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 86 cggccgtggaaggagttcgcgaggacggtggtgatg 121
|||||||||||||||| |||||||||||||||||
Sbjct: 474 cggccgtggaaggagtattcgaggacggtggtgatg 439
>gb|AC006224.4| Arabidopsis thaliana chromosome 2 clone MFL8 map CIC10F02, complete
sequence
Length = 45714
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Minus
Query: 86 cggccgtggaaggagttcgcgaggacggtggtgatg 121
|||||||||||||||| |||||||||||||||||
Sbjct: 24838 cggccgtggaaggagtattcgaggacggtggtgatg 24803
>emb|BX819811.1|CNS0A7ZT Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS30ZB11 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1759
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 86 cggccgtggaaggagttcgcgaggacggtggtgatg 121
|||||||||||||||| |||||||||||||||||
Sbjct: 1289 cggccgtggaaggagtattcgaggacggtggtgatg 1324
>emb|BX821476.1|CNS0A808 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL44ZD06 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 388
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 86 cggccgtggaaggagttcgcgaggacggtggtgatg 121
|||||||||||||||| |||||||||||||||||
Sbjct: 57 cggccgtggaaggagtattcgaggacggtggtgatg 92
>gb|BT023433.1| Arabidopsis thaliana At2g43050 gene, complete cds
Length = 1801
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 86 cggccgtggaaggagttcgcgaggacggtggtgatg 121
|||||||||||||||| |||||||||||||||||
Sbjct: 1270 cggccgtggaaggagtattcgaggacggtggtgatg 1305
>ref|NM_129866.3| Arabidopsis thaliana enzyme inhibitor/ pectinesterase AT2G43050 mRNA,
complete cds
Length = 1848
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 86 cggccgtggaaggagttcgcgaggacggtggtgatg 121
|||||||||||||||| |||||||||||||||||
Sbjct: 1286 cggccgtggaaggagtattcgaggacggtggtgatg 1321
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 48.1 bits (24), Expect = 0.002
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 86 cggccgtggaaggagttcgcgaggacggtggtgatg 121
|||||||||||||||| |||||||||||||||||
Sbjct: 17910958 cggccgtggaaggagtattcgaggacggtggtgatg 17910993
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaaca 50
||||||||||||||||||||
Sbjct: 18930491 cagcagcagcaacagcaaca 18930510
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagcaaca 50
||||||||||||||||||||
Sbjct: 15098340 cagcagcagcaacagcaaca 15098321
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaaca 50
||||||||||||||||||||
Sbjct: 13388018 cagcagcagcaacagcaaca 13388037
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaaca 50
||||||||||||||||||||
Sbjct: 13041481 cagcagcagcaacagcaaca 13041500
>gb|BP601630.1|BP601630 BP601630 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-51-B01 3',
mRNA sequence
Length = 427
Score = 46.1 bits (23), Expect = 0.007
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 86 cggccgtggaaggagttcgcgaggacggtggtgat 120
|||||||||||||||| ||||||||||||||||
Sbjct: 417 cggccgtggaaggagtattcgaggacggtggtgat 383
>gb|B10245.1|B10245 F26L5-T7 IGF Arabidopsis thaliana genomic clone F26L5, DNA sequence
Length = 690
Score = 42.1 bits (21), Expect = 0.10
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 222 cagcagcagcaacagcaacaa 202
>gb|AQ010631.1|AQ010631 F26L5TFB IGF Arabidopsis thaliana genomic clone F26L5, DNA sequence
Length = 604
Score = 42.1 bits (21), Expect = 0.10
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 194 cagcagcagcaacagcaacaa 174
>gb|BH242028.1|BH242028 ATYQD11TR ATYQ Arabidopsis thaliana genomic clone ATYQD11, DNA
sequence
Length = 721
Score = 42.1 bits (21), Expect = 0.10
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 74 acgtacctgggccggccgtggaaggagtt 102
||||| || ||||||||||||||||||||
Sbjct: 656 acgtatcttggccggccgtggaaggagtt 684
>gb|AV781599.1|AV781599 AV781599 RAFL3 Arabidopsis thaliana cDNA clone RAFL03-02-L06 3',
mRNA sequence
Length = 612
Score = 42.1 bits (21), Expect = 0.10
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 74 acgtacctgggccggccgtggaaggagtt 102
||||| || ||||||||||||||||||||
Sbjct: 431 acgtatcttggccggccgtggaaggagtt 403
>gb|AV785040.1|AV785040 AV785040 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-10-O06 3',
mRNA sequence
Length = 676
Score = 42.1 bits (21), Expect = 0.10
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 74 acgtacctgggccggccgtggaaggagtt 102
||||| || ||||||||||||||||||||
Sbjct: 450 acgtatcttggccggccgtggaaggagtt 422
>gb|AV795576.1|AV795576 AV795576 RAFL8 Arabidopsis thaliana cDNA clone RAFL08-18-D09 3',
mRNA sequence
Length = 437
Score = 42.1 bits (21), Expect = 0.10
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 74 acgtacctgggccggccgtggaaggagtt 102
||||| || ||||||||||||||||||||
Sbjct: 433 acgtatcttggccggccgtggaaggagtt 405
>gb|AU239134.1|AU239134 AU239134 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-57-F04 5',
mRNA sequence
Length = 648
Score = 42.1 bits (21), Expect = 0.10
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 35 cagcagcagcaacagcaacaa 55
>gb|AV545230.1|AV545230 AV545230 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ76g06F 3', mRNA sequence
Length = 584
Score = 42.1 bits (21), Expect = 0.10
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 74 acgtacctgggccggccgtggaaggagtt 102
||||| || ||||||||||||||||||||
Sbjct: 374 acgtatcttggccggccgtggaaggagtt 346
>gb|AV553478.1|AV553478 AV553478 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ63e05R 5', mRNA sequence
Length = 574
Score = 42.1 bits (21), Expect = 0.10
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 153 cagcagcagcaacagcaacaa 173
>gb|CK119593.1|CK119593 211j17.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011J17211
5-PRIME, mRNA sequence
Length = 613
Score = 42.1 bits (21), Expect = 0.10
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 74 acgtacctgggccggccgtggaaggagtt 102
||||| || ||||||||||||||||||||
Sbjct: 270 acgtatcttggccggccgtggaaggagtt 298
>gb|BP596102.1|BP596102 BP596102 RAFL15 Arabidopsis thaliana cDNA clone RAFL15-32-L12 3',
mRNA sequence
Length = 442
Score = 42.1 bits (21), Expect = 0.10
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 74 acgtacctgggccggccgtggaaggagtt 102
||||| || ||||||||||||||||||||
Sbjct: 403 acgtatcttggccggccgtggaaggagtt 375
>gb|BP606140.1|BP606140 BP606140 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-69-L22 3',
mRNA sequence
Length = 434
Score = 42.1 bits (21), Expect = 0.10
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 89 ccgtggaaggagttcgcgaggacggtggtgatg 121
||||||||||||| |||||||||||||||||
Sbjct: 416 ccgtggaaggagtattcgaggacggtggtgatg 384
>gb|BP606605.1|BP606605 BP606605 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-71-I17 3',
mRNA sequence
Length = 441
Score = 42.1 bits (21), Expect = 0.10
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 89 ccgtggaaggagttcgcgaggacggtggtgatg 121
||||||||||||| |||||||||||||||||
Sbjct: 417 ccgtggaaggagtattcgaggacggtggtgatg 385
>gb|DR750101.1|DR750101 71-L021844-065-006-D12S-SeLA MPIZ-ADIS-065d Arabidopsis thaliana
cDNA clone 006-D12, mRNA sequence
Length = 850
Score = 42.1 bits (21), Expect = 0.10
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 288 cagcagcagcaacagcaacaa 308
>gb|U25649.1|ATU25649 Arabidopsis thaliana putative pectin methylesterase (ATPME2) gene,
partial cds, and (ATPME1) gene, complete cds
Length = 5873
Score = 42.1 bits (21), Expect = 0.10
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 74 acgtacctgggccggccgtggaaggagtt 102
||||| || ||||||||||||||||||||
Sbjct: 4584 acgtatcttggccggccgtggaaggagtt 4612
>gb|AF152555.1|AF152555 Arabidopsis thaliana putative zinc finger protein SHI (SHI) mRNA,
complete cds
Length = 1669
Score = 42.1 bits (21), Expect = 0.10
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 640 cagcagcagcaacagcaacaa 660
>gb|AY054197.1| Arabidopsis thaliana At1g53840/T18A20_7 mRNA, complete cds
Length = 1937
Score = 42.1 bits (21), Expect = 0.10
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 74 acgtacctgggccggccgtggaaggagtt 102
||||| || ||||||||||||||||||||
Sbjct: 1508 acgtatcttggccggccgtggaaggagtt 1536
>gb|AF378782.1| Arabidopsis thaliana SEUSS transcriptional co-regulator mRNA,
complete cds
Length = 3559
Score = 42.1 bits (21), Expect = 0.10
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 2390 cagcagcagcaacagcaacaa 2410
>emb|AX544407.1| Sequence 60 from Patent WO02066660
Length = 996
Score = 42.1 bits (21), Expect = 0.10
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 214 cagcagcagcaacagcaacaa 234
>gb|AY088104.1| Arabidopsis thaliana clone 41374 mRNA, complete sequence
Length = 1948
Score = 42.1 bits (21), Expect = 0.10
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 74 acgtacctgggccggccgtggaaggagtt 102
||||| || ||||||||||||||||||||
Sbjct: 1520 acgtatcttggccggccgtggaaggagtt 1548
>gb|AC009324.2| Arabidopsis thaliana chromosome I BAC T18A20 genomic sequence, complete
sequence
Length = 85413
Score = 42.1 bits (21), Expect = 0.10
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 74 acgtacctgggccggccgtggaaggagtt 102
||||| || ||||||||||||||||||||
Sbjct: 38396 acgtatcttggccggccgtggaaggagtt 38424
>gb|AC006423.7|AC006423 Arabidopsis thaliana chromosome I BAC F28H19 genomic sequence, complete
sequence
Length = 131692
Score = 42.1 bits (21), Expect = 0.10
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 97124 cagcagcagcaacagcaacaa 97144
>emb|BX832484.1|CNS0A109 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH76ZB07 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1035
Score = 42.1 bits (21), Expect = 0.10
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 349 cagcagcagcaacagcaacaa 369
>dbj|AB022211.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K1L20
Length = 47665
Score = 42.1 bits (21), Expect = 0.10
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 42511 cagcagcagcaacagcaacaa 42491
>dbj|AK118277.1| Arabidopsis thaliana At1g43850 mRNA for unknown protein, complete
cds, clone: RAFL19-57-F04
Length = 1333
Score = 42.1 bits (21), Expect = 0.10
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 35 cagcagcagcaacagcaacaa 55
>emb|CQ803912.1| Sequence 323 from Patent WO2004035798
Length = 2634
Score = 42.1 bits (21), Expect = 0.10
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 1789 cagcagcagcaacagcaacaa 1809
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 42.1 bits (21), Expect = 0.10
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 23424003 cagcagcagcaacagcaacaa 23423983
>emb|X81585.1|ATPME1 A.thaliana mRNA for pectin methylesterase
Length = 1970
Score = 42.1 bits (21), Expect = 0.10
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 74 acgtacctgggccggccgtggaaggagtt 102
||||| || ||||||||||||||||||||
Sbjct: 1519 acgtatcttggccggccgtggaaggagtt 1547
>emb|CS138000.1| Sequence 971 from Patent WO2005047516
Length = 996
Score = 42.1 bits (21), Expect = 0.10
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 214 cagcagcagcaacagcaacaa 234
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 42.1 bits (21), Expect = 0.10
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 74 acgtacctgggccggccgtggaaggagtt 102
||||| || ||||||||||||||||||||
Sbjct: 4462422 acgtatcttggccggccgtggaaggagtt 4462450
Score = 42.1 bits (21), Expect = 0.10
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 1107081 cagcagcagcaacagcaacaa 1107101
>ref|NM_126033.1| Arabidopsis thaliana SHI (SHORT INTERNODES); transcription factor
AT5G66350 (SHI) mRNA, complete cds
Length = 1669
Score = 42.1 bits (21), Expect = 0.10
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 640 cagcagcagcaacagcaacaa 660
>ref|NM_103511.3| Arabidopsis thaliana SEU (SEUSS); transcription cofactor AT1G43850
(SEU) mRNA, complete cds
Length = 3688
Score = 42.1 bits (21), Expect = 0.10
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 2390 cagcagcagcaacagcaacaa 2410
>ref|NM_104261.2| Arabidopsis thaliana ATPME1; pectinesterase AT1G53840 (ATPME1) mRNA,
complete cds
Length = 2058
Score = 42.1 bits (21), Expect = 0.10
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 74 acgtacctgggccggccgtggaaggagtt 102
||||| || ||||||||||||||||||||
Sbjct: 1550 acgtatcttggccggccgtggaaggagtt 1578
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 42.1 bits (21), Expect = 0.10
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 26523156 cagcagcagcaacagcaacaa 26523136
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 42.1 bits (21), Expect = 0.10
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 74 acgtacctgggccggccgtggaaggagtt 102
||||| || ||||||||||||||||||||
Sbjct: 20106827 acgtatcttggccggccgtggaaggagtt 20106855
Score = 42.1 bits (21), Expect = 0.10
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 16623191 cagcagcagcaacagcaacaa 16623211
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 163,825
Number of Sequences: 1013581
Number of extensions: 163825
Number of successful extensions: 16225
Number of sequences better than 0.5: 133
Number of HSP's better than 0.5 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15196
Number of HSP's gapped (non-prelim): 1015
length of query: 571
length of database: 908,940,872
effective HSP length: 20
effective length of query: 551
effective length of database: 888,669,252
effective search space: 489656757852
effective search space used: 489656757852
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)