BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3696743.2.1
(977 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|U91995.1|ATU91995 Arabidopsis thaliana Argonaute protein... 220 3e-055
gb|AY080690.1| Arabidopsis thaliana At1g48410 mRNA sequence 220 3e-055
gb|BT000941.1| Arabidopsis thaliana clone C105223 putative ... 220 3e-055
ref|NM_103737.2| Arabidopsis thaliana AGO1 (ARGONAUTE 1) AT... 220 3e-055
ref|NM_179453.1| Arabidopsis thaliana AGO1 (ARGONAUTE 1) AT... 220 3e-055
gb|CK119358.1|CK119358 212p13.p1 AtM1 Arabidopsis thaliana ... 218 1e-054
gb|AV523806.1|AV523806 AV523806 Arabidopsis thaliana aboveg... 151 3e-034
gb|AV441187.1|AV441187 AV441187 Arabidopsis thaliana above-... 149 1e-033
gb|AV545970.1|AV545970 AV545970 Arabidopsis thaliana roots ... 149 1e-033
gb|AV563657.1|AV563657 AV563657 Arabidopsis thaliana green ... 149 1e-033
emb|BX815116.1|CNS0AAU5 Arabidopsis thaliana Full-length cD... 141 3e-031
emb|BX818680.1|CNS0ACI7 Arabidopsis thaliana Full-length cD... 141 3e-031
gb|BE523184.1|BE523184 M35A4STM Arabidopsis developing seed... 137 4e-030
gb|AV529891.1|AV529891 AV529891 Arabidopsis thaliana aboveg... 127 4e-027
gb|AV548086.1|AV548086 AV548086 Arabidopsis thaliana roots ... 127 4e-027
gb|AV548172.1|AV548172 AV548172 Arabidopsis thaliana roots ... 127 4e-027
gb|AY600524.1| Arabidopsis thaliana hypothetical protein (A... 127 4e-027
gb|AV560716.1|AV560716 AV560716 Arabidopsis thaliana green ... 125 2e-026
gb|AV532952.1|AV532952 AV532952 Arabidopsis thaliana flower... 123 6e-026
gb|AV534003.1|AV534003 AV534003 Arabidopsis thaliana flower... 123 6e-026
gb|BP795190.1|BP795190 BP795190 RAFL7 Arabidopsis thaliana ... 121 2e-025
gb|CK121100.1|CK121100 204j21.p1 AtM1 Arabidopsis thaliana ... 113 6e-023
gb|BP618364.1|BP618364 BP618364 RAFL16 Arabidopsis thaliana... 109 9e-022
gb|AI993691.1|AI993691 701497176 A. thaliana, Ohio State cl... 107 4e-021
gb|BP619936.1|BP619936 BP619936 RAFL16 Arabidopsis thaliana... 107 4e-021
gb|BP640077.1|BP640077 BP640077 RAFL19 Arabidopsis thaliana... 100 9e-019
gb|BP575189.1|BP575189 BP575189 RAFL14 Arabidopsis thaliana... 94 5e-017
gb|BP601377.1|BP601377 BP601377 RAFL16 Arabidopsis thaliana... 94 5e-017
gb|BP611041.1|BP611041 BP611041 RAFL16 Arabidopsis thaliana... 94 5e-017
gb|BP617474.1|BP617474 BP617474 RAFL16 Arabidopsis thaliana... 94 5e-017
gb|AV442417.1|AV442417 AV442417 Arabidopsis thaliana above-... 90 8e-016
gb|AV792863.1|AV792863 AV792863 RAFL7 Arabidopsis thaliana ... 88 3e-015
gb|CB260762.1|CB260762 67-E009520-012-003-F21-T7R MPIZ-ADIS... 86 1e-014
emb|AJ223508.1|ART223508 Arabidopsis thaliana mRNA for Zwil... 86 1e-014
emb|AX505737.1| Sequence 432 from Patent WO0216655 86 1e-014
ref|NM_123748.2| Arabidopsis thaliana ZLL (ZWILLE) AT5G4381... 86 1e-014
gb|BP657306.1|BP657306 BP657306 RAFL19 Arabidopsis thaliana... 84 5e-014
gb|BP785021.1|BP785021 BP785021 RAFL7 Arabidopsis thaliana ... 84 5e-014
gb|BP606094.1|BP606094 BP606094 RAFL16 Arabidopsis thaliana... 82 2e-013
gb|BP658160.1|BP658160 BP658160 RAFL19 Arabidopsis thaliana... 76 1e-011
gb|AV813765.1|AV813765 AV813765 RAFL9 Arabidopsis thaliana ... 70 8e-010
gb|CA781259.1|CA781259 014A08AF Infected Arabidopsis Leaf A... 70 8e-010
gb|BP782038.1|BP782038 BP782038 RAFL7 Arabidopsis thaliana ... 70 8e-010
gb|BP782965.1|BP782965 BP782965 RAFL7 Arabidopsis thaliana ... 68 3e-009
gb|B96649.1|B96649 T30P20TR TAMU Arabidopsis thaliana genom... 66 1e-008
gb|BP647257.1|BP647257 BP647257 RAFL19 Arabidopsis thaliana... 66 1e-008
gb|AC020889.3|AC020889 Genomic sequence for Arabidopsis tha... 66 1e-008
gb|AC007932.3|F11A17 Arabidopsis thaliana chromosome 1 BAC ... 66 1e-008
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 66 1e-008
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 66 1e-008
gb|BP642404.1|BP642404 BP642404 RAFL19 Arabidopsis thaliana... 62 2e-007
gb|BP780450.1|BP780450 BP780450 RAFL7 Arabidopsis thaliana ... 62 2e-007
emb|BX530819.1| Arabidopsis thaliana T-DNA flanking sequenc... 60 8e-007
emb|BX530820.1| Arabidopsis thaliana T-DNA flanking sequenc... 60 8e-007
gb|BP605782.1|BP605782 BP605782 RAFL16 Arabidopsis thaliana... 60 8e-007
gb|BP611537.1|BP611537 BP611537 RAFL16 Arabidopsis thaliana... 60 8e-007
gb|AV547685.1|AV547685 AV547685 Arabidopsis thaliana roots ... 56 1e-005
gb|BP650636.1|BP650636 BP650636 RAFL19 Arabidopsis thaliana... 56 1e-005
gb|BX838222.1|BX838222 BX838222 Arabidopsis thaliana Siliqu... 52 2e-004
emb|BX821460.1|CNS0A8DH Arabidopsis thaliana Full-length cD... 52 2e-004
ref|NM_179779.1| Arabidopsis thaliana unknown protein AT2G2... 52 2e-004
gb|AF154272.1|AF154272 Arabidopsis thaliana PINHEAD (PINHEA... 50 7e-004
dbj|AB026651.1| Arabidopsis thaliana genomic DNA, chromosom... 50 7e-004
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 50 7e-004
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 50 7e-004
gb|BP610427.1|BP610427 BP610427 RAFL16 Arabidopsis thaliana... 48 0.003
gb|BP793539.1|BP793539 BP793539 RAFL7 Arabidopsis thaliana ... 48 0.003
gb|BP600427.1|BP600427 BP600427 RAFL16 Arabidopsis thaliana... 46 0.011
emb|CR397329.1| Arabidopsis thaliana T-DNA flanking sequenc... 44 0.045
gb|BE521779.1|BE521779 M21E10XTM Arabidopsis developing see... 44 0.045
gb|AA651494.1|AA651494 31608 Lambda-PRL2 Arabidopsis thalia... 42 0.18
gb|BE520592.1|BE520592 M13F6XTM Arabidopsis developing seed... 42 0.18
gb|AV522776.1|AV522776 AV522776 Arabidopsis thaliana aboveg... 42 0.18
gb|AV546856.1|AV546856 AV546856 Arabidopsis thaliana roots ... 42 0.18
gb|AV547340.1|AV547340 AV547340 Arabidopsis thaliana roots ... 42 0.18
gb|AV547477.1|AV547477 AV547477 Arabidopsis thaliana roots ... 42 0.18
gb|AV547579.1|AV547579 AV547579 Arabidopsis thaliana roots ... 42 0.18
gb|BP599876.1|BP599876 BP599876 RAFL16 Arabidopsis thaliana... 42 0.18
gb|BP643817.1|BP643817 BP643817 RAFL19 Arabidopsis thaliana... 42 0.18
gb|BP778517.1|BP778517 BP778517 RAFL7 Arabidopsis thaliana ... 42 0.18
>gb|U91995.1|ATU91995 Arabidopsis thaliana Argonaute protein (AGO1) mRNA, complete cds
Length = 3473
Score = 220 bits (111), Expect = 3e-055
Identities = 387/479 (80%)
Strand = Plus / Minus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
|||||||||||||| || ||||| | || ||||| ||||| ||||| |||||||| |||
Sbjct: 3122 tctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcaggggga 3063
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtt 533
|| ||||| |||||||||||||| || |||||||||||||| ||||| ||||| |||| |
Sbjct: 3062 acaattgaaactgagcgtgtgcatcttgcatacgtgtaacataagttattggtcagagat 3003
Query: 534 tgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggacgg 593
|| | ||||| || ||||| |||||||||||||| ||||| || ||||| ||||| ||
Sbjct: 3002 tgaagtccatctgcagtaaagttgttctcatcccaaagaacgtggtaatgagcaggtcga 2943
Query: 594 cttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaa 653
|| |||||||| |||||||| || || ||||| || |||||||| || || |||||
Sbjct: 2942 gaagtgccctgaataccagcatgactacagaggtaaaagtcaaactctgtagggtggcag 2883
Query: 654 atctttgagtccaccacagtgcccggcagtatgttgccacttctatcggcagcacgctga 713
|| || |||||||| |||||||| || | || || |||||||| || | | | | ||
Sbjct: 2882 attttagagtccacaacagtgccaggtaaaatattcccacttctgtccaccgaatggcga 2823
Query: 714 tcattgtgattattaacaaacaacctggtgtgatgacgcttctggaccacgacaaaagta 773
|||||||| || | | |||||| ||| ||||||||||||||||| ||||| ||||| ||
Sbjct: 2822 tcattgtggttctgagcaaacagcctcgtgtgatgacgcttctgcaccaccacaaatgtc 2763
Query: 774 actggaggctggtaatcagactccaatgatgcacaggcctttctaatggcatcaagttcg 833
||||| || || ||| | | |||| || ||||||||||| | ||||||||||||||
Sbjct: 2762 actggtggttgataacctgcttccagcgaagcacaggccttgcggatggcatcaagttca 2703
Query: 834 tacaacagaacttggtagaactgtccctcactgacaccatccctgtagaatatgatcct 892
|| | || ||||||||| || |||||||||||||| |||||||||||||| ||||||||
Sbjct: 2702 tagagcaaaacttggtaaaattgtccctcactgactccatccctgtagaagatgatcct 2644
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 262 agcagtagaacatgacgcgcttcac 286
|||||||||||||||| ||||||||
Sbjct: 3271 agcagtagaacatgacacgcttcac 3247
>gb|AY080690.1| Arabidopsis thaliana At1g48410 mRNA sequence
Length = 2764
Score = 220 bits (111), Expect = 3e-055
Identities = 387/479 (80%)
Strand = Plus / Minus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
|||||||||||||| || ||||| | || ||||| ||||| ||||| |||||||| |||
Sbjct: 2394 tctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcaggggga 2335
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtt 533
|| ||||| |||||||||||||| || |||||||||||||| ||||| ||||| |||| |
Sbjct: 2334 acaattgaaactgagcgtgtgcatcttgcatacgtgtaacataagttattggtcagagat 2275
Query: 534 tgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggacgg 593
|| | ||||| || ||||| |||||||||||||| ||||| || ||||| ||||| ||
Sbjct: 2274 tgaagtccatctgcagtaaagttgttctcatcccaaagaacgtggtaatgagcaggtcga 2215
Query: 594 cttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaa 653
|| |||||||| |||||||| || || ||||| || |||||||| || || |||||
Sbjct: 2214 gaagtgccctgaataccagcatgactacagaggtaaaagtcaaactctgtagggtggcag 2155
Query: 654 atctttgagtccaccacagtgcccggcagtatgttgccacttctatcggcagcacgctga 713
|| || |||||||| |||||||| || | || || |||||||| || | | | | ||
Sbjct: 2154 attttagagtccacaacagtgccaggtaaaatattcccacttctgtccaccgaatggcga 2095
Query: 714 tcattgtgattattaacaaacaacctggtgtgatgacgcttctggaccacgacaaaagta 773
|||||||| || | | |||||| ||| ||||||||||||||||| ||||| ||||| ||
Sbjct: 2094 tcattgtggttctgagcaaacagcctcgtgtgatgacgcttctgcaccaccacaaatgtc 2035
Query: 774 actggaggctggtaatcagactccaatgatgcacaggcctttctaatggcatcaagttcg 833
||||| || || ||| | | |||| || ||||||||||| | ||||||||||||||
Sbjct: 2034 actggtggttgataacctgcttccagcgaagcacaggccttgcggatggcatcaagttca 1975
Query: 834 tacaacagaacttggtagaactgtccctcactgacaccatccctgtagaatatgatcct 892
|| | || ||||||||| || |||||||||||||| |||||||||||||| ||||||||
Sbjct: 1974 tagagcaaaacttggtaaaattgtccctcactgactccatccctgtagaagatgatcct 1916
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 262 agcagtagaacatgacgcgcttcac 286
|||||||||||||||| ||||||||
Sbjct: 2543 agcagtagaacatgacacgcttcac 2519
>gb|BT000941.1| Arabidopsis thaliana clone C105223 putative leaf development protein
Argonaute (At1g48410) mRNA, complete cds
Length = 3177
Score = 220 bits (111), Expect = 3e-055
Identities = 387/479 (80%)
Strand = Plus / Minus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
|||||||||||||| || ||||| | || ||||| ||||| ||||| |||||||| |||
Sbjct: 2996 tctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcaggggga 2937
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtt 533
|| ||||| |||||||||||||| || |||||||||||||| ||||| ||||| |||| |
Sbjct: 2936 acaattgaaactgagcgtgtgcatcttgcatacgtgtaacataagttattggtcagagat 2877
Query: 534 tgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggacgg 593
|| | ||||| || ||||| |||||||||||||| ||||| || ||||| ||||| ||
Sbjct: 2876 tgaagtccatctgcagtaaagttgttctcatcccaaagaacgtggtaatgagcaggtcga 2817
Query: 594 cttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaa 653
|| |||||||| |||||||| || || ||||| || |||||||| || || |||||
Sbjct: 2816 gaagtgccctgaataccagcatgactacagaggtaaaagtcaaactctgtagggtggcag 2757
Query: 654 atctttgagtccaccacagtgcccggcagtatgttgccacttctatcggcagcacgctga 713
|| || |||||||| |||||||| || | || || |||||||| || | | | | ||
Sbjct: 2756 attttagagtccacaacagtgccaggtaaaatattcccacttctgtccaccgaatggcga 2697
Query: 714 tcattgtgattattaacaaacaacctggtgtgatgacgcttctggaccacgacaaaagta 773
|||||||| || | | |||||| ||| ||||||||||||||||| ||||| ||||| ||
Sbjct: 2696 tcattgtggttctgagcaaacagcctcgtgtgatgacgcttctgcaccaccacaaatgtc 2637
Query: 774 actggaggctggtaatcagactccaatgatgcacaggcctttctaatggcatcaagttcg 833
||||| || || ||| | | |||| || ||||||||||| | ||||||||||||||
Sbjct: 2636 actggtggttgataacctgcttccagcgaagcacaggccttgcggatggcatcaagttca 2577
Query: 834 tacaacagaacttggtagaactgtccctcactgacaccatccctgtagaatatgatcct 892
|| | || ||||||||| || |||||||||||||| |||||||||||||| ||||||||
Sbjct: 2576 tagagcaaaacttggtaaaattgtccctcactgactccatccctgtagaagatgatcct 2518
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 262 agcagtagaacatgacgcgcttcac 286
|||||||||||||||| ||||||||
Sbjct: 3145 agcagtagaacatgacacgcttcac 3121
>ref|NM_103737.2| Arabidopsis thaliana AGO1 (ARGONAUTE 1) AT1G48410 (AGO1) transcript
variant AT1G48410.1 mRNA, complete cds
Length = 3483
Score = 220 bits (111), Expect = 3e-055
Identities = 387/479 (80%)
Strand = Plus / Minus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
|||||||||||||| || ||||| | || ||||| ||||| ||||| |||||||| |||
Sbjct: 3145 tctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcaggggga 3086
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtt 533
|| ||||| |||||||||||||| || |||||||||||||| ||||| ||||| |||| |
Sbjct: 3085 acaattgaaactgagcgtgtgcatcttgcatacgtgtaacataagttattggtcagagat 3026
Query: 534 tgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggacgg 593
|| | ||||| || ||||| |||||||||||||| ||||| || ||||| ||||| ||
Sbjct: 3025 tgaagtccatctgcagtaaagttgttctcatcccaaagaacgtggtaatgagcaggtcga 2966
Query: 594 cttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaa 653
|| |||||||| |||||||| || || ||||| || |||||||| || || |||||
Sbjct: 2965 gaagtgccctgaataccagcatgactacagaggtaaaagtcaaactctgtagggtggcag 2906
Query: 654 atctttgagtccaccacagtgcccggcagtatgttgccacttctatcggcagcacgctga 713
|| || |||||||| |||||||| || | || || |||||||| || | | | | ||
Sbjct: 2905 attttagagtccacaacagtgccaggtaaaatattcccacttctgtccaccgaatggcga 2846
Query: 714 tcattgtgattattaacaaacaacctggtgtgatgacgcttctggaccacgacaaaagta 773
|||||||| || | | |||||| ||| ||||||||||||||||| ||||| ||||| ||
Sbjct: 2845 tcattgtggttctgagcaaacagcctcgtgtgatgacgcttctgcaccaccacaaatgtc 2786
Query: 774 actggaggctggtaatcagactccaatgatgcacaggcctttctaatggcatcaagttcg 833
||||| || || ||| | | |||| || ||||||||||| | ||||||||||||||
Sbjct: 2785 actggtggttgataacctgcttccagcgaagcacaggccttgcggatggcatcaagttca 2726
Query: 834 tacaacagaacttggtagaactgtccctcactgacaccatccctgtagaatatgatcct 892
|| | || ||||||||| || |||||||||||||| |||||||||||||| ||||||||
Sbjct: 2725 tagagcaaaacttggtaaaattgtccctcactgactccatccctgtagaagatgatcct 2667
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 262 agcagtagaacatgacgcgcttcac 286
|||||||||||||||| ||||||||
Sbjct: 3294 agcagtagaacatgacacgcttcac 3270
>ref|NM_179453.1| Arabidopsis thaliana AGO1 (ARGONAUTE 1) AT1G48410 (AGO1) transcript
variant AT1G48410.2 mRNA, complete cds
Length = 3489
Score = 220 bits (111), Expect = 3e-055
Identities = 387/479 (80%)
Strand = Plus / Minus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
|||||||||||||| || ||||| | || ||||| ||||| ||||| |||||||| |||
Sbjct: 3151 tctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcaggggga 3092
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtt 533
|| ||||| |||||||||||||| || |||||||||||||| ||||| ||||| |||| |
Sbjct: 3091 acaattgaaactgagcgtgtgcatcttgcatacgtgtaacataagttattggtcagagat 3032
Query: 534 tgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggacgg 593
|| | ||||| || ||||| |||||||||||||| ||||| || ||||| ||||| ||
Sbjct: 3031 tgaagtccatctgcagtaaagttgttctcatcccaaagaacgtggtaatgagcaggtcga 2972
Query: 594 cttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaa 653
|| |||||||| |||||||| || || ||||| || |||||||| || || |||||
Sbjct: 2971 gaagtgccctgaataccagcatgactacagaggtaaaagtcaaactctgtagggtggcag 2912
Query: 654 atctttgagtccaccacagtgcccggcagtatgttgccacttctatcggcagcacgctga 713
|| || |||||||| |||||||| || | || || |||||||| || | | | | ||
Sbjct: 2911 attttagagtccacaacagtgccaggtaaaatattcccacttctgtccaccgaatggcga 2852
Query: 714 tcattgtgattattaacaaacaacctggtgtgatgacgcttctggaccacgacaaaagta 773
|||||||| || | | |||||| ||| ||||||||||||||||| ||||| ||||| ||
Sbjct: 2851 tcattgtggttctgagcaaacagcctcgtgtgatgacgcttctgcaccaccacaaatgtc 2792
Query: 774 actggaggctggtaatcagactccaatgatgcacaggcctttctaatggcatcaagttcg 833
||||| || || ||| | | |||| || ||||||||||| | ||||||||||||||
Sbjct: 2791 actggtggttgataacctgcttccagcgaagcacaggccttgcggatggcatcaagttca 2732
Query: 834 tacaacagaacttggtagaactgtccctcactgacaccatccctgtagaatatgatcct 892
|| | || ||||||||| || |||||||||||||| |||||||||||||| ||||||||
Sbjct: 2731 tagagcaaaacttggtaaaattgtccctcactgactccatccctgtagaagatgatcct 2673
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 262 agcagtagaacatgacgcgcttcac 286
|||||||||||||||| ||||||||
Sbjct: 3300 agcagtagaacatgacacgcttcac 3276
>gb|CK119358.1|CK119358 212p13.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011P13212
5-PRIME, mRNA sequence
Length = 775
Score = 218 bits (110), Expect = 1e-054
Identities = 386/478 (80%)
Strand = Plus / Minus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
|||||||||||||| || ||||| | || ||||| ||||| ||||| |||||||| |||
Sbjct: 478 tctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcaggggga 419
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtt 533
|| ||||| |||||||||||||| || |||||||||||||| ||||| ||||| |||| |
Sbjct: 418 acaattgaaactgagcgtgtgcatcttgcatacgtgtaacataagttattggtcagagat 359
Query: 534 tgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggacgg 593
|| | ||||| || ||||| |||||||||||||| ||||| || ||||| ||||| ||
Sbjct: 358 tgaagtccatctgcagtaaagttgttctcatcccaaagaacgtggtaatgagcaggtcga 299
Query: 594 cttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaa 653
|| |||||||| |||||||| || || ||||| || |||||||| || || |||||
Sbjct: 298 gaagtgccctgaataccagcatgactacagaggtaaaagtcaaactctgtagggtggcag 239
Query: 654 atctttgagtccaccacagtgcccggcagtatgttgccacttctatcggcagcacgctga 713
|| || |||||||| |||||||| || | || || |||||||| || | | | | ||
Sbjct: 238 attttagagtccacaacagtgccaggtaaaatattcccacttctgtccaccgaatggcga 179
Query: 714 tcattgtgattattaacaaacaacctggtgtgatgacgcttctggaccacgacaaaagta 773
|||||||| || | | |||||| ||| ||||||||||||||||| ||||| ||||| ||
Sbjct: 178 tcattgtggttctgagcaaacagcctcgtgtgatgacgcttctgcaccaccacaaatgtc 119
Query: 774 actggaggctggtaatcagactccaatgatgcacaggcctttctaatggcatcaagttcg 833
||||| || || ||| | | |||| || ||||||||||| | ||||||||||||||
Sbjct: 118 actggtggttgataacctgcttccagcgaagcacaggccttgcggatggcatcaagttca 59
Query: 834 tacaacagaacttggtagaactgtccctcactgacaccatccctgtagaatatgatcc 891
|| | || ||||||||| || |||||||||||||| |||||||||||||| |||||||
Sbjct: 58 tagagcaaaacttggtaaaattgtccctcactgactccatccctgtagaagatgatcc 1
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 262 agcagtagaacatgacgcgcttcac 286
|||||||||||||||| ||||||||
Sbjct: 627 agcagtagaacatgacacgcttcac 603
>gb|AV523806.1|AV523806 AV523806 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL40f03F 3', mRNA
sequence
Length = 447
Score = 151 bits (76), Expect = 3e-034
Identities = 286/356 (80%)
Strand = Plus / Plus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
|||||||||||||| || ||||| | || ||||| ||||| ||||| |||||||| |||
Sbjct: 86 tctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcaggggga 145
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtt 533
|| ||||| |||||||||||||| || |||||||||||||| ||||| ||||| |||| |
Sbjct: 146 acaattgaaactgagcgtgtgcatcttgcatacgtgtaacataagttattggtcagagat 205
Query: 534 tgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggacgg 593
|| | ||||| || ||||| |||||||||||||| ||||| || ||||| ||||| ||
Sbjct: 206 tgaagtccatctgcagtaaagttgttctcatcccaaagaacgtggtaatgagcaggtcga 265
Query: 594 cttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaa 653
|| |||||||| |||||||| || || ||||| || |||||||| || | |||||
Sbjct: 266 gaagtgccctgaataccagcatgactacagaggtaaaagtcaaactctgtacggtggcag 325
Query: 654 atctttgagtccaccacagtgcccggcagtatgttgccacttctatcggcagcacgctga 713
|| || |||||||| |||||||| || | || || |||||||| || | | | | ||
Sbjct: 326 attttagagtccacaacagtgccaggtaaaatattcccacttctgtccaccgaatggcga 385
Query: 714 tcattgtgattattaacaaacaacctggtgtgatgacgcttctggaccacgacaaa 769
|||||||| || | | |||||| ||| ||||||||||||||||| ||||| |||||
Sbjct: 386 tcattgtggttctgagcaaacagcctcgtgtgatgacgcttctgcaccaccacaaa 441
>gb|AV441187.1|AV441187 AV441187 Arabidopsis thaliana above-ground organ two to six-week
old Arabidopsis thaliana cDNA clone APZ31g03_f 3', mRNA
sequence
Length = 607
Score = 149 bits (75), Expect = 1e-033
Identities = 216/263 (82%)
Strand = Plus / Plus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
|||||||||||||| || ||||| | || ||||| ||||| ||||| |||||||| |||
Sbjct: 269 tctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcaggggga 328
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtt 533
|| ||||| |||||||||||||| || |||||||||||||| ||||| ||||| |||| |
Sbjct: 329 acaattgaaactgagcgtgtgcatcttgcatacgtgtaacataagttattggtcagagat 388
Query: 534 tgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggacgg 593
|| | ||||| || ||||| |||||||||||||| ||||| || ||||| ||||| ||
Sbjct: 389 tgaagtccatctgcagtaaagttgttctcatcccaaagaacgtggtaatgagcaggtcga 448
Query: 594 cttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaa 653
|| |||||||| |||||||| || || ||||| || |||||||| || || |||||
Sbjct: 449 gaagtgccctgaataccagcatgactacagaggtaaaagtcaaactctgtagggtggcag 508
Query: 654 atctttgagtccaccacagtgcc 676
|| || |||||||| ||||||||
Sbjct: 509 attttagagtccacaacagtgcc 531
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 262 agcagtagaacatgacgcgcttcac 286
|||||||||||||||| ||||||||
Sbjct: 120 agcagtagaacatgacacgcttcac 144
>gb|AV545970.1|AV545970 AV545970 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZL06e02F 3', mRNA sequence
Length = 575
Score = 149 bits (75), Expect = 1e-033
Identities = 216/263 (82%)
Strand = Plus / Plus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
|||||||||||||| || ||||| | || ||||| ||||| ||||| |||||||| |||
Sbjct: 280 tctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcaggggga 339
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtt 533
|| ||||| |||||||||||||| || |||||||||||||| ||||| ||||| |||| |
Sbjct: 340 acaattgaaactgagcgtgtgcatcttgcatacgtgtaacataagttattggtcagagat 399
Query: 534 tgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggacgg 593
|| | ||||| || ||||| |||||||||||||| ||||| || ||||| ||||| ||
Sbjct: 400 tgaagtccatctgcagtaaagttgttctcatcccaaagaacgtggtaatgagcaggtcga 459
Query: 594 cttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaa 653
|| |||||||| |||||||| || || ||||| || |||||||| || || |||||
Sbjct: 460 gaagtgccctgaataccagcatgactacagaggtaaaagtcaaactctgtagggtggcag 519
Query: 654 atctttgagtccaccacagtgcc 676
|| || |||||||| ||||||||
Sbjct: 520 attttagagtccacaacagtgcc 542
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 262 agcagtagaacatgacgcgcttcac 286
|||||||||||||||| ||||||||
Sbjct: 131 agcagtagaacatgacacgcttcac 155
>gb|AV563657.1|AV563657 AV563657 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ191b06F 3', mRNA sequence
Length = 601
Score = 149 bits (75), Expect = 1e-033
Identities = 216/263 (82%)
Strand = Plus / Plus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
|||||||||||||| || ||||| | || ||||| ||||| ||||| |||||||| |||
Sbjct: 280 tctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcaggggga 339
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtt 533
|| ||||| |||||||||||||| || |||||||||||||| ||||| ||||| |||| |
Sbjct: 340 acaattgaaactgagcgtgtgcatcttgcatacgtgtaacataagttattggtcagagat 399
Query: 534 tgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggacgg 593
|| | ||||| || ||||| |||||||||||||| ||||| || ||||| ||||| ||
Sbjct: 400 tgaagtccatctgcagtaaagttgttctcatcccaaagaacgtggtaatgagcaggtcga 459
Query: 594 cttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaa 653
|| |||||||| |||||||| || || ||||| || |||||||| || || |||||
Sbjct: 460 gaagtgccctgaataccagcatgactacagaggtaaaagtcaaactctgtagggtggcag 519
Query: 654 atctttgagtccaccacagtgcc 676
|| || |||||||| ||||||||
Sbjct: 520 attttagagtccacaacagtgcc 542
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 262 agcagtagaacatgacgcgcttcac 286
|||||||||||||||| ||||||||
Sbjct: 131 agcagtagaacatgacacgcttcac 155
>emb|BX815116.1|CNS0AAU5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS34ZG07 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 3188
Score = 141 bits (71), Expect = 3e-031
Identities = 215/263 (81%)
Strand = Plus / Minus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
|||||||||||||| || ||||| | | ||||| ||||| ||||| |||||||| |||
Sbjct: 2872 tctggctccatgtagaatcgagccctaagagctgctagatgtgcataatatgcaggggga 2813
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtt 533
|| ||||| |||||||||||||| || |||||||||||||| ||||| ||||| |||| |
Sbjct: 2812 acaattgaaactgagcgtgtgcatcttgcatacgtgtaacataagttattggtcagagat 2753
Query: 534 tgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggacgg 593
|| | ||||| || ||||| |||||||||||||| ||||| || ||||| ||||| ||
Sbjct: 2752 tgaagtccatctgcagtaaagttgttctcatcccaaagaacgtggtaatgagcaggtcga 2693
Query: 594 cttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaa 653
|| |||||||| |||||||| || || ||||| || |||||||| || || |||||
Sbjct: 2692 gaagtgccctgaataccagcatgactacagaggtaaaagtcaaactctgtagggtggcag 2633
Query: 654 atctttgagtccaccacagtgcc 676
|| || |||||||| ||||||||
Sbjct: 2632 attttagagtccacaacagtgcc 2610
Score = 97.6 bits (49), Expect = 3e-018
Identities = 149/181 (82%), Gaps = 1/181 (0%)
Strand = Plus / Minus
Query: 712 gatcattgtgattattaacaaacaacctggtgtgatgacgcttctggaccacgacaaaag 771
|||||||||| || | | |||||| ||| ||||||||||||||||| ||||| ||||| |
Sbjct: 2572 gatcattgtggttctgagcaaacagcctcgtgtgatgacgcttctgcaccaccacaaatg 2513
Query: 772 taactggaggctggtaatcagactccaatgatgcacaggcctttctaatggcatcaagtt 831
| ||||| || || ||| | | |||| || |||||||||| | |||||||||||||
Sbjct: 2512 tcactggtggttgataacctgcttccagcgaa-cacaggccttgcggatggcatcaagtt 2454
Query: 832 cgtacaacagaacttggtagaactgtccctcactgacaccatccctgtagaatatgatcc 891
| || | || ||||||||| || |||||||||||||| |||||||||||||| |||||||
Sbjct: 2453 catagagcaaaacttggtaaaattgtccctcactgactccatccctgtagaagatgatcc 2394
Query: 892 t 892
|
Sbjct: 2393 t 2393
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 262 agcagtagaacatgacgcgcttcac 286
|||||||||||||||| ||||||||
Sbjct: 3021 agcagtagaacatgacacgcttcac 2997
>emb|BX818680.1|CNS0ACI7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL91ZD02 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 728
Score = 141 bits (71), Expect = 3e-031
Identities = 215/263 (81%)
Strand = Plus / Minus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
|||||||||||||| || ||||| | || ||||| ||||| ||||| |||||||| |||
Sbjct: 401 tctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcaggggga 342
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtt 533
|| ||||| |||||||||||||| || |||||||||||||| ||||| ||||| |||| |
Sbjct: 341 acaattgaaactgagcgtgtgcatcttgcatacgtgtaacataagttattggtcagagat 282
Query: 534 tgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggacgg 593
|| | ||||| || ||||| |||||||||||||| ||||| || ||||| ||||| ||
Sbjct: 281 tgaagtccatctgcagtaaagttgttctcatcccaaagaacgtggtaatgagcaggtcga 222
Query: 594 cttgttccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaa 653
|| |||||||| ||||| || || || ||||| || |||||||| || || |||||
Sbjct: 221 gaagtgccctgaataccagcgtgactacagaggtaaaagtcaaactctgtagggtggcag 162
Query: 654 atctttgagtccaccacagtgcc 676
|| || |||||||| ||||||||
Sbjct: 161 attttagagtccacaacagtgcc 139
Score = 61.9 bits (31), Expect = 2e-007
Identities = 58/67 (86%)
Strand = Plus / Minus
Query: 712 gatcattgtgattattaacaaacaacctggtgtgatgacgcttctggaccacgacaaaag 771
|||||||||| || | | |||||| ||| ||||||||||||||||| ||||| ||||| |
Sbjct: 102 gatcattgtggttctgagcaaacagcctcgtgtgatgacgcttctgcaccaccacaaatg 43
Query: 772 taactgg 778
|||||||
Sbjct: 42 taactgg 36
>gb|BE523184.1|BE523184 M35A4STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone M35A4 5', mRNA sequence
Length = 394
Score = 137 bits (69), Expect = 4e-030
Identities = 282/353 (79%)
Strand = Plus / Minus
Query: 540 ccatcagccgtaaatttgttctcatcccacagaacatgataatgggcaggacggcttgtt 599
||||| || ||||| |||||||||||||| ||||| || ||||| ||||| || ||
Sbjct: 371 ccatctgcagtaaagttgttctcatcccaaagaacgtggtaatgagcaggtcgagaagtg 312
Query: 600 ccctgaatgccagcatggctgcacaggtagaaatcaaactcggttggatggcaaatcttt 659
|||||||| |||||||| || || ||||| || |||||||| || || ||||| || ||
Sbjct: 311 ccctgaataccagcatgactacagaggtaaaagtcaaactctgtagggtggcagatttta 252
Query: 660 gagtccaccacagtgcccggcagtatgttgccacttctatcggcagcacgctgatcattg 719
|||||||| |||||||| || | || || |||||||| || | | | | ||||||||
Sbjct: 251 gagtccacaacagtgccaggtaaaatattcccacttctgtccaccgaatggcgatcattg 192
Query: 720 tgattattaacaaacaacctggtgtgatgacgcttctggaccacgacaaaagtaactgga 779
|| || | | |||||| ||| ||||||||||||||||| ||||| ||||| || |||||
Sbjct: 191 tggttctgagcaaacagcctcgtgtgatgacgcttctgcaccaccacaaatgtcactggt 132
Query: 780 ggctggtaatcagactccaatgatgcacaggcctttctaatggcatcaagttcgtacaac 839
|| || ||| | | |||| || ||||||||||| | |||||||||||||| || | |
Sbjct: 131 ggttgataacctgcttccagcgaagcacaggccttgcggatggcatcaagttcatagagc 72
Query: 840 agaacttggtagaactgtccctcactgacaccatccctgtagaatatgatcct 892
| ||||||||| || |||||||||||||| |||||||||||||| ||||||||
Sbjct: 71 aaaacttggtaaaattgtccctcactgactccatccctgtagaagatgatcct 19
>gb|AV529891.1|AV529891 AV529891 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APZL51c02R 5', mRNA
sequence
Length = 528
Score = 127 bits (64), Expect = 4e-027
Identities = 148/176 (84%)
Strand = Plus / Plus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
|||||||||||||| || ||||| | || ||||| ||||| ||||| |||||||| |||
Sbjct: 332 tctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcaggggga 391
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtt 533
|| ||||| |||||||||||||| || |||||||||||||| ||||| ||||| |||| |
Sbjct: 392 acaattgaaactgagcgtgtgcatcttgcatacgtgtaacataagttattggtcagagat 451
Query: 534 tgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcagg 589
|| | ||||| || ||||| |||||||||||||| ||||| || ||||| |||||
Sbjct: 452 tgaagtccatctgcagtaaagttgttctcatcccaaagaacgtggtaatgagcagg 507
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 262 agcagtagaacatgacgcgcttcac 286
|||||||||||||||| ||||||||
Sbjct: 183 agcagtagaacatgacacgcttcac 207
>gb|AV548086.1|AV548086 AV548086 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZL46g10F 3', mRNA sequence
Length = 511
Score = 127 bits (64), Expect = 4e-027
Identities = 148/176 (84%)
Strand = Plus / Plus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
|||||||||||||| || ||||| | || ||||| ||||| ||||| |||||||| |||
Sbjct: 327 tctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcaggggga 386
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtt 533
|| ||||| |||||||||||||| || |||||||||||||| ||||| ||||| |||| |
Sbjct: 387 acaattgaaactgagcgtgtgcatcttgcatacgtgtaacataagttattggtcagagat 446
Query: 534 tgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcagg 589
|| | ||||| || ||||| |||||||||||||| ||||| || ||||| |||||
Sbjct: 447 tgaagtccatctgcagtaaagttgttctcatcccaaagaacgtggtaatgagcagg 502
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 262 agcagtagaacatgacgcgcttcac 286
|||||||||||||||| ||||||||
Sbjct: 178 agcagtagaacatgacacgcttcac 202
>gb|AV548172.1|AV548172 AV548172 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZL48g02F 3', mRNA sequence
Length = 540
Score = 127 bits (64), Expect = 4e-027
Identities = 148/176 (84%)
Strand = Plus / Plus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
|||||||||||||| || ||||| | || ||||| ||||| ||||| |||||||| |||
Sbjct: 330 tctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcaggggga 389
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtt 533
|| ||||| |||||||||||||| || |||||||||||||| ||||| ||||| |||| |
Sbjct: 390 acaattgaaactgagcgtgtgcatcttgcatacgtgtaacataagttattggtcagagat 449
Query: 534 tgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcagg 589
|| | ||||| || ||||| |||||||||||||| ||||| || ||||| |||||
Sbjct: 450 tgaagtccatctgcagtaaagttgttctcatcccaaagaacgtggtaatgagcagg 505
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 262 agcagtagaacatgacgcgcttcac 286
|||||||||||||||| ||||||||
Sbjct: 181 agcagtagaacatgacacgcttcac 205
>gb|AY600524.1| Arabidopsis thaliana hypothetical protein (At1g48405) mRNA,
complete cds
Length = 1462
Score = 127 bits (64), Expect = 4e-027
Identities = 148/176 (84%)
Strand = Plus / Minus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
|||||||||||||| || ||||| | || ||||| ||||| ||||| |||||||| |||
Sbjct: 181 tctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcaggggga 122
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtt 533
|| ||||| |||||||||||||| || |||||||||||||| ||||| ||||| |||| |
Sbjct: 121 acaattgaaactgagcgtgtgcatcttgcatacgtgtaacataagttattggtcagagat 62
Query: 534 tgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcagg 589
|| | ||||| || ||||| |||||||||||||| ||||| || ||||| |||||
Sbjct: 61 tgaagtccatctgcagtaaagttgttctcatcccaaagaacgtggtaatgagcagg 6
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 262 agcagtagaacatgacgcgcttcac 286
|||||||||||||||| ||||||||
Sbjct: 330 agcagtagaacatgacacgcttcac 306
>gb|AV560716.1|AV560716 AV560716 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ139e07F 3', mRNA sequence
Length = 505
Score = 125 bits (63), Expect = 2e-026
Identities = 147/175 (84%)
Strand = Plus / Plus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
|||||||||||||| || ||||| | || ||||| ||||| ||||| |||||||| |||
Sbjct: 331 tctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcaggggga 390
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtt 533
|| ||||| |||||||||||||| || |||||||||||||| ||||| ||||| |||| |
Sbjct: 391 acaattgaaactgagcgtgtgcatcttgcatacgtgtaacataagttattggtcagagat 450
Query: 534 tgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatgggcag 588
|| | ||||| || ||||| |||||||||||||| ||||| || ||||| ||||
Sbjct: 451 tgaagtccatctgcagtaaagttgttctcatcccaaagaacgtggtaatgagcag 505
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 262 agcagtagaacatgacgcgcttcac 286
|||||||||||||||| ||||||||
Sbjct: 182 agcagtagaacatgacacgcttcac 206
>gb|AV532952.1|AV532952 AV532952 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB053a03F 3', mRNA sequence
Length = 507
Score = 123 bits (62), Expect = 6e-026
Identities = 143/170 (84%)
Strand = Plus / Plus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
|||||||||||||| || ||||| | || ||||| ||||| ||||| |||||||| |||
Sbjct: 334 tctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcaggggga 393
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtt 533
|| ||||| |||||||||||||| || |||||||||||||| ||||| ||||| |||| |
Sbjct: 394 acaattgaaactgagcgtgtgcatcttgcatacgtgtaacataagttattggtcagagat 453
Query: 534 tgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatg 583
|| | ||||| || ||||| |||||||||||||| ||||| || |||||
Sbjct: 454 tgaagtccatctgcagtaaagttgttctcatcccaaagaacgtggtaatg 503
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 262 agcagtagaacatgacgcgcttcac 286
|||||||||||||||| ||||||||
Sbjct: 185 agcagtagaacatgacacgcttcac 209
>gb|AV534003.1|AV534003 AV534003 Arabidopsis thaliana flower buds Columbia Arabidopsis
thaliana cDNA clone FB072b01F 3', mRNA sequence
Length = 512
Score = 123 bits (62), Expect = 6e-026
Identities = 143/170 (84%)
Strand = Plus / Plus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
|||||||||||||| || ||||| | || ||||| ||||| ||||| |||||||| |||
Sbjct: 339 tctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcaggggga 398
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtt 533
|| ||||| |||||||||||||| || |||||||||||||| ||||| ||||| |||| |
Sbjct: 399 acaattgaaactgagcgtgtgcatcttgcatacgtgtaacataagttattggtcagagat 458
Query: 534 tgcaacccatcagccgtaaatttgttctcatcccacagaacatgataatg 583
|| | ||||| || ||||| |||||||||||||| ||||| || |||||
Sbjct: 459 tgaagtccatctgcagtaaagttgttctcatcccaaagaacgtggtaatg 508
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 262 agcagtagaacatgacgcgcttcac 286
|||||||||||||||| ||||||||
Sbjct: 190 agcagtagaacatgacacgcttcac 214
>gb|BP795190.1|BP795190 BP795190 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-64-A11 3',
mRNA sequence
Length = 499
Score = 121 bits (61), Expect = 2e-025
Identities = 136/161 (84%)
Strand = Plus / Plus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
|||||||||||||| || ||||| | || ||||| ||||| ||||| |||||||| |||
Sbjct: 336 tctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcaggggga 395
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtt 533
|| ||||| |||||||||||||| || |||||||||||||| ||||| ||||| |||| |
Sbjct: 396 acaattgaaactgagcgtgtgcatcttgcatacgtgtaacataagttattggtcagagat 455
Query: 534 tgcaacccatcagccgtaaatttgttctcatcccacagaac 574
|| | ||||| || ||||| |||||||||||||| |||||
Sbjct: 456 tgaagtccatctgcagtaaagttgttctcatcccaaagaac 496
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 262 agcagtagaacatgacgcgcttcac 286
|||||||||||||||| ||||||||
Sbjct: 187 agcagtagaacatgacacgcttcac 211
>gb|CK121100.1|CK121100 204j21.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011J21204
5-PRIME, mRNA sequence
Length = 777
Score = 113 bits (57), Expect = 6e-023
Identities = 150/181 (82%)
Strand = Plus / Minus
Query: 712 gatcattgtgattattaacaaacaacctggtgtgatgacgcttctggaccacgacaaaag 771
|||||||||| || | | |||||| ||| ||||||||||||||||| ||||| ||||| |
Sbjct: 672 gatcattgtggttctgagcaaacagcctcgtgtgatgacgcttctgcaccaccacaaatg 613
Query: 772 taactggaggctggtaatcagactccaatgatgcacaggcctttctaatggcatcaagtt 831
| ||||| || || ||| | | |||| || ||||||||||| | |||||||||||||
Sbjct: 612 tcactggtggttgataacctgcttccagcgaagcacaggccttgcggatggcatcaagtt 553
Query: 832 cgtacaacagaacttggtagaactgtccctcactgacaccatccctgtagaatatgatcc 891
| || | || ||||||||| || |||||||||||||| |||||||||||||| |||||||
Sbjct: 552 catagagcaaaacttggtaaaattgtccctcactgactccatccctgtagaagatgatcc 493
Query: 892 t 892
|
Sbjct: 492 t 492
>gb|BP618364.1|BP618364 BP618364 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-28-A09 3',
mRNA sequence
Length = 445
Score = 109 bits (55), Expect = 9e-022
Identities = 112/131 (85%)
Strand = Plus / Plus
Query: 444 gctgccagatgagcatagtatgcaggaggaacgattgatactgagcgtgtgcacctggca 503
||||| ||||| ||||| |||||||| ||||| ||||| |||||||||||||| || |||
Sbjct: 308 gctgctagatgtgcataatatgcagggggaacaattgaaactgagcgtgtgcatcttgca 367
Query: 504 tacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatttgttctca 563
||||||||||| ||||| ||||| |||| ||| | ||||| || ||||| |||||||||
Sbjct: 368 tacgtgtaacataagttattggtcagagattgaagtccatctgcagtaaagttgttctca 427
Query: 564 tcccacagaac 574
||||| |||||
Sbjct: 428 tcccaaagaac 438
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 262 agcagtagaacatgacgcgcttcac 286
|||||||||||||||| ||||||||
Sbjct: 133 agcagtagaacatgacacgcttcac 157
>gb|AI993691.1|AI993691 701497176 A. thaliana, Ohio State clone set Arabidopsis thaliana
cDNA clone 701497176, mRNA sequence
Length = 481
Score = 107 bits (54), Expect = 4e-021
Identities = 149/181 (82%)
Strand = Plus / Minus
Query: 712 gatcattgtgattattaacaaacaacctggtgtgatgacgcttctggaccacgacaaaag 771
|||||||||| || | | |||||| ||| ||||||||||||||||| ||||| ||||| |
Sbjct: 477 gatcattgtggttctgagcaaacagcctcgtgtgatgacgcttctgcaccaccacaaatg 418
Query: 772 taactggaggctggtaatcagactccaatgatgcacaggcctttctaatggcatcaagtt 831
| ||||| || || ||| | | ||| || ||||||||||| | |||||||||||||
Sbjct: 417 tcactggtggttgataacctgttnccagcgaagcacaggccttgcggatggcatcaagtt 358
Query: 832 cgtacaacagaacttggtagaactgtccctcactgacaccatccctgtagaatatgatcc 891
| || | || ||||||||| || |||||||||||||| |||||||||||||| |||||||
Sbjct: 357 catagagcaaaacttggtaaaattgtccctcactgactccatccctgtagaagatgatcc 298
Query: 892 t 892
|
Sbjct: 297 t 297
>gb|BP619936.1|BP619936 BP619936 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-35-C16 3',
mRNA sequence
Length = 431
Score = 107 bits (54), Expect = 4e-021
Identities = 126/150 (84%)
Strand = Plus / Plus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
|||||||||||||| || ||||| | || ||||| ||||| ||||| |||||||| |||
Sbjct: 282 tctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcaggggga 341
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagagtt 533
|| ||||| |||||||||||||| || |||||||||||||| ||||| ||||| |||| |
Sbjct: 342 acaattgaaactgagcgtgtgcatcttgcatacgtgtaacataagttattggtcagagat 401
Query: 534 tgcaacccatcagccgtaaatttgttctca 563
|| | ||||| || ||||| |||||||||
Sbjct: 402 tgaagtccatctgcagtaaagttgttctca 431
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 262 agcagtagaacatgacgcgcttcac 286
|||||||||||||||| ||||||||
Sbjct: 133 agcagtagaacatgacacgcttcac 157
>gb|BP640077.1|BP640077 BP640077 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-50-E21 3',
mRNA sequence
Length = 404
Score = 99.6 bits (50), Expect = 9e-019
Identities = 101/118 (85%)
Strand = Plus / Plus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
|||||||||||||| || ||||| | || ||||| ||||| ||||| |||||||| |||
Sbjct: 281 tctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcaggggga 340
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagag 531
|| ||||| |||||||||||||| || |||||||||||||| ||||| ||||| ||||
Sbjct: 341 acaattgaaactgagcgtgtgcatcttgcatacgtgtaacataagttattggtcagag 398
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 262 agcagtagaacatgacgcgcttcac 286
|||||||||||||||| ||||||||
Sbjct: 132 agcagtagaacatgacacgcttcac 156
>gb|BP575189.1|BP575189 BP575189 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-11-F08 3',
mRNA sequence
Length = 436
Score = 93.7 bits (47), Expect = 5e-017
Identities = 92/107 (85%)
Strand = Plus / Plus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
|||||||||||||| || ||||| | || ||||| ||||| ||||| |||||||| |||
Sbjct: 328 tctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcaggggga 387
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagtt 520
|| ||||| |||||||||||||| || |||||||||||||| |||||
Sbjct: 388 acaattgaaactgagcgtgtgcatcttgcatacgtgtaacataagtt 434
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 262 agcagtagaacatgacgcgcttcac 286
|||||||||||||||| ||||||||
Sbjct: 179 agcagtagaacatgacacgcttcac 203
>gb|BP601377.1|BP601377 BP601377 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-49-M05 3',
mRNA sequence
Length = 437
Score = 93.7 bits (47), Expect = 5e-017
Identities = 92/107 (85%)
Strand = Plus / Plus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
|||||||||||||| || ||||| | || ||||| ||||| ||||| |||||||| |||
Sbjct: 328 tctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcaggggga 387
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagtt 520
|| ||||| |||||||||||||| || |||||||||||||| |||||
Sbjct: 388 acaattgaaactgagcgtgtgcatcttgcatacgtgtaacataagtt 434
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 262 agcagtagaacatgacgcgcttcac 286
|||||||||||||||| ||||||||
Sbjct: 179 agcagtagaacatgacacgcttcac 203
>gb|BP611041.1|BP611041 BP611041 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-84-F12 3',
mRNA sequence
Length = 435
Score = 93.7 bits (47), Expect = 5e-017
Identities = 92/107 (85%)
Strand = Plus / Plus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
|||||||||||||| || ||||| | || ||||| ||||| ||||| |||||||| |||
Sbjct: 328 tctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcaggggga 387
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagtt 520
|| ||||| |||||||||||||| || |||||||||||||| |||||
Sbjct: 388 acaattgaaactgagcgtgtgcatcttgcatacgtgtaacataagtt 434
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 262 agcagtagaacatgacgcgcttcac 286
|||||||||||||||| ||||||||
Sbjct: 179 agcagtagaacatgacacgcttcac 203
>gb|BP617474.1|BP617474 BP617474 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-24-B20 3',
mRNA sequence
Length = 439
Score = 93.7 bits (47), Expect = 5e-017
Identities = 92/107 (85%)
Strand = Plus / Plus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
|||||||||||||| || ||||| | || ||||| ||||| ||||| |||||||| |||
Sbjct: 329 tctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcaggggga 388
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagtt 520
|| ||||| |||||||||||||| || |||||||||||||| |||||
Sbjct: 389 acaattgaaactgagcgtgtgcatcttgcatacgtgtaacataagtt 435
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 262 agcagtagaacatgacgcgcttcac 286
|||||||||||||||| ||||||||
Sbjct: 180 agcagtagaacatgacacgcttcac 204
>gb|AV442417.1|AV442417 AV442417 Arabidopsis thaliana above-ground organ two to six-week
old Arabidopsis thaliana cDNA clone APZ31g03_r 5', mRNA
sequence
Length = 393
Score = 89.7 bits (45), Expect = 8e-016
Identities = 78/89 (87%)
Strand = Plus / Minus
Query: 804 gcacaggcctttctaatggcatcaagttcgtacaacagaacttggtagaactgtccctca 863
||||||||||| | |||||||||||||| || | || ||||||||| || |||||||||
Sbjct: 379 gcacaggccttgcggatggcatcaagttcatagagcaaaacttggtaaaattgtccctca 320
Query: 864 ctgacaccatccctgtagaatatgatcct 892
||||| |||||||||||||| ||||||||
Sbjct: 319 ctgactccatccctgtagaagatgatcct 291
>gb|AV792863.1|AV792863 AV792863 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-17-A08 3',
mRNA sequence
Length = 439
Score = 87.7 bits (44), Expect = 3e-015
Identities = 95/112 (84%)
Strand = Plus / Plus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
|||||||||||||| || ||||| | || |||| ||||| ||||| |||||||| |||
Sbjct: 328 tctggctccatgtagaatcgagccctaaaagctggtagatgtgcataatatgcaggggga 387
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttgg 525
|| ||||| |||||||||||||| || |||||||||||||| ||||| ||||
Sbjct: 388 acaattgaaactgagcgtgtgcatcttgcatacgtgtaacataagttattgg 439
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 262 agcagtagaacatgacgcgcttcac 286
|||||||||||||||| ||||||||
Sbjct: 179 agcagtagaacatgacacgcttcac 203
>gb|CB260762.1|CB260762 67-E009520-012-003-F21-T7R MPIZ-ADIS-012 Arabidopsis thaliana cDNA
clone MPIZp769F213Q 5-PRIME, mRNA sequence
Length = 532
Score = 85.7 bits (43), Expect = 1e-014
Identities = 172/215 (80%)
Strand = Plus / Minus
Query: 435 gctcggaaggctgccagatgagcatagtatgcaggaggaacgattgatactgagcgtgtg 494
||||| || ||||| ||||||||||| || || |||||||| || || || || || |||
Sbjct: 436 gctcgaaatgctgcaagatgagcataatacgctggaggaactatagagaccgaccgagtg 377
Query: 495 cacctggcatacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaat 554
|||| ||||| || ||||| | ||||| || |||| ||| | ||||| || || ||
Sbjct: 376 caccgcgcataggtataacagagattgttagtcagagattgaataccatctgctgtgaaa 317
Query: 555 ttgttctcatcccacagaacatgataatgggcaggacggcttgttccctgaatgccagca 614
|||||||| ||||| |||||||| ||||| ||||| | ||||||||||||||| || |||
Sbjct: 316 ttgttctcgtcccaaagaacatggtaatgtgcaggcctgcttgttccctgaatacccgca 257
Query: 615 tggctgcacaggtagaaatcaaactcggttggatg 649
||||| || |||||||| || || || ||||||||
Sbjct: 256 tggctacaaaggtagaagtcgaattcagttggatg 222
>emb|AJ223508.1|ART223508 Arabidopsis thaliana mRNA for Zwille protein
Length = 3323
Score = 85.7 bits (43), Expect = 1e-014
Identities = 172/215 (80%)
Strand = Plus / Minus
Query: 435 gctcggaaggctgccagatgagcatagtatgcaggaggaacgattgatactgagcgtgtg 494
||||| || ||||| ||||||||||| || || |||||||| || || || || || |||
Sbjct: 2950 gctcgaaatgctgcaagatgagcataatacgctggaggaactatagagaccgaccgagtg 2891
Query: 495 cacctggcatacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaat 554
|||| ||||| || ||||| | ||||| || |||| ||| | ||||| || || ||
Sbjct: 2890 caccgcgcataggtataacagagattgttagtcagagattgaataccatctgctgtgaaa 2831
Query: 555 ttgttctcatcccacagaacatgataatgggcaggacggcttgttccctgaatgccagca 614
|||||||| ||||| |||||||| ||||| ||||| | ||||||||||||||| || |||
Sbjct: 2830 ttgttctcgtcccaaagaacatggtaatgtgcaggcctgcttgttccctgaatacccgca 2771
Query: 615 tggctgcacaggtagaaatcaaactcggttggatg 649
||||| || |||||||| || || || ||||||||
Sbjct: 2770 tggctacaaaggtagaagtcgaattcagttggatg 2736
>emb|AX505737.1| Sequence 432 from Patent WO0216655
Length = 2967
Score = 85.7 bits (43), Expect = 1e-014
Identities = 172/215 (80%)
Strand = Plus / Minus
Query: 435 gctcggaaggctgccagatgagcatagtatgcaggaggaacgattgatactgagcgtgtg 494
||||| || ||||| ||||||||||| || || |||||||| || || || || || |||
Sbjct: 2822 gctcgaaatgctgcaagatgagcataatacgctggaggaactatagagaccgaccgagtg 2763
Query: 495 cacctggcatacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaat 554
|||| ||||| || ||||| | ||||| || |||| ||| | ||||| || || ||
Sbjct: 2762 caccgcgcataggtataacagagattgttagtcagagattgaataccatctgctgtgaaa 2703
Query: 555 ttgttctcatcccacagaacatgataatgggcaggacggcttgttccctgaatgccagca 614
|||||||| ||||| |||||||| ||||| ||||| | ||||||||||||||| || |||
Sbjct: 2702 ttgttctcgtcccaaagaacatggtaatgtgcaggcctgcttgttccctgaatacccgca 2643
Query: 615 tggctgcacaggtagaaatcaaactcggttggatg 649
||||| || |||||||| || || || ||||||||
Sbjct: 2642 tggctacaaaggtagaagtcgaattcagttggatg 2608
>ref|NM_123748.2| Arabidopsis thaliana ZLL (ZWILLE) AT5G43810 (ZLL) mRNA, complete cds
Length = 3330
Score = 85.7 bits (43), Expect = 1e-014
Identities = 172/215 (80%)
Strand = Plus / Minus
Query: 435 gctcggaaggctgccagatgagcatagtatgcaggaggaacgattgatactgagcgtgtg 494
||||| || ||||| ||||||||||| || || |||||||| || || || || || |||
Sbjct: 2950 gctcgaaatgctgcaagatgagcataatacgctggaggaactatagagaccgaccgagtg 2891
Query: 495 cacctggcatacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaat 554
|||| ||||| || ||||| | ||||| || |||| ||| | ||||| || || ||
Sbjct: 2890 caccgcgcataggtataacagagattgttagtcagagattgaataccatctgctgtgaaa 2831
Query: 555 ttgttctcatcccacagaacatgataatgggcaggacggcttgttccctgaatgccagca 614
|||||||| ||||| |||||||| ||||| ||||| | ||||||||||||||| || |||
Sbjct: 2830 ttgttctcgtcccaaagaacatggtaatgtgcaggcctgcttgttccctgaatacccgca 2771
Query: 615 tggctgcacaggtagaaatcaaactcggttggatg 649
||||| || |||||||| || || || ||||||||
Sbjct: 2770 tggctacaaaggtagaagtcgaattcagttggatg 2736
>gb|BP657306.1|BP657306 BP657306 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-30-M01 3',
mRNA sequence
Length = 399
Score = 83.8 bits (42), Expect = 5e-014
Identities = 100/118 (84%), Gaps = 1/118 (0%)
Strand = Plus / Plus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
|||||||||||||| || ||||| | || ||||| ||||| ||||| |||||||| |||
Sbjct: 277 tctggctccatgtagaatcgagc-ctaaaagctgctagatgtgcataatatgcaggggga 335
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagttgttggtgagag 531
|| ||||| |||||||||||||| || ||||| |||||||| ||||| ||||| ||||
Sbjct: 336 acaattgaaactgagcgtgtgcatcttgcataggtgtaacataagttattggtcagag 393
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 262 agcagtagaacatgacgcgcttcac 286
|||||||||||||||| ||||||||
Sbjct: 132 agcagtagaacatgacacgcttcac 156
>gb|BP785021.1|BP785021 BP785021 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-93-B12 3',
mRNA sequence
Length = 432
Score = 83.8 bits (42), Expect = 5e-014
Identities = 84/98 (85%)
Strand = Plus / Plus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
|||||||||||||| || ||||| | || ||||| ||||| ||||| |||||||| |||
Sbjct: 335 tctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcaggggga 394
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgta 511
|| ||||| |||||||||||||| || |||||||||||
Sbjct: 395 acaattgaaactgagcgtgtgcatcttgcatacgtgta 432
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 262 agcagtagaacatgacgcgcttcac 286
|||||||||||||||| ||||||||
Sbjct: 186 agcagtagaacatgacacgcttcac 210
>gb|BP606094.1|BP606094 BP606094 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-69-I10 3',
mRNA sequence
Length = 424
Score = 81.8 bits (41), Expect = 2e-013
Identities = 83/97 (85%)
Strand = Plus / Plus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
|||||||||||||| || ||||| | || ||||| ||||| ||||| |||||||| |||
Sbjct: 328 tctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcaggggga 387
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgt 510
|| ||||| |||||||||||||| || ||||||||||
Sbjct: 388 acaattgaaactgagcgtgtgcatcttgcatacgtgt 424
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 262 agcagtagaacatgacgcgcttcac 286
|||||||||||||||| ||||||||
Sbjct: 179 agcagtagaacatgacacgcttcac 203
>gb|BP658160.1|BP658160 BP658160 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-34-D11 3',
mRNA sequence
Length = 389
Score = 75.8 bits (38), Expect = 1e-011
Identities = 90/106 (84%), Gaps = 1/106 (0%)
Strand = Plus / Plus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
|||||||||||||| || ||||| | || |||| ||||| ||||| |||||||| |||
Sbjct: 276 tctggctccatgtagaatcgagc-ctaaaagctggtagatgtgcataatatgcaggggga 334
Query: 474 acgattgatactgagcgtgtgcacctggcatacgtgtaacacaagt 519
|| ||||| |||||||||||||| || |||||||||||||| ||||
Sbjct: 335 acaattgaaactgagcgtgtgcatcttgcatacgtgtaacataagt 380
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 262 agcagtagaacatgacgcgcttcac 286
|||||||||||||||| ||||||||
Sbjct: 132 agcagtagaacatgacacgcttcac 156
>gb|AV813765.1|AV813765 AV813765 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-79-O07 3',
mRNA sequence
Length = 399
Score = 69.9 bits (35), Expect = 8e-010
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
|||||||||||||| || ||||| | || ||||| ||||| ||||| |||||||| |||
Sbjct: 311 tctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcaggggga 370
Query: 474 acgattgatactgagcgtgtgca 496
|| ||||| ||||||||||||||
Sbjct: 371 acaattgaaactgagcgtgtgca 393
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 262 agcagtagaacatgacgcgcttcac 286
|||||||||||||||| ||||||||
Sbjct: 163 agcagtagaacatgacacgcttcac 187
>gb|CA781259.1|CA781259 014A08AF Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA
sequence
Length = 569
Score = 69.9 bits (35), Expect = 8e-010
Identities = 80/95 (84%)
Strand = Plus / Minus
Query: 555 ttgttctcatcccacagaacatgataatgggcaggacggcttgttccctgaatgccagca 614
|||||||| ||||| |||||||| ||||| |||| | ||||||||||||||| || |||
Sbjct: 561 ttgttctcgtcccaaagaacatggtaatgtccaggcctgcttgttccctgaatacccgca 502
Query: 615 tggctgcacaggtagaaatcaaactcggttggatg 649
||||| || |||||||| || || || ||||||||
Sbjct: 501 tggctacaaaggtagaagtcgaattcagttggatg 467
>gb|BP782038.1|BP782038 BP782038 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-80-K18 3',
mRNA sequence
Length = 412
Score = 69.9 bits (35), Expect = 8e-010
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
|||||||||||||| || ||||| | || ||||| ||||| ||||| |||||||| |||
Sbjct: 329 tctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcaggggga 388
Query: 474 acgattgatactgagcgtgtgca 496
|| ||||| ||||||||||||||
Sbjct: 389 acaattgaaactgagcgtgtgca 411
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 262 agcagtagaacatgacgcgcttcac 286
|||||||||||||||| ||||||||
Sbjct: 180 agcagtagaacatgacacgcttcac 204
>gb|BP782965.1|BP782965 BP782965 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-84-D22 3',
mRNA sequence
Length = 416
Score = 67.9 bits (34), Expect = 3e-009
Identities = 70/82 (85%)
Strand = Plus / Plus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
|||||||||||||| || ||||| | || ||||| ||||| ||||| |||||||| |||
Sbjct: 335 tctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcaggggga 394
Query: 474 acgattgatactgagcgtgtgc 495
|| ||||| |||||||||||||
Sbjct: 395 acaattgaaactgagcgtgtgc 416
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 262 agcagtagaacatgacgcgcttcac 286
|||||||||||||||| ||||||||
Sbjct: 186 agcagtagaacatgacacgcttcac 210
>gb|B96649.1|B96649 T30P20TR TAMU Arabidopsis thaliana genomic clone T30P20, DNA
sequence
Length = 436
Score = 65.9 bits (33), Expect = 1e-008
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 819 atggcatcaagttcgtacaacagaacttggtagaactgtccctcactgacaccatccctg 878
|||||||||||||| || | || ||||||||| || |||||||||||||| |||||||||
Sbjct: 250 atggcatcaagttcatagagcaaaacttggtaaaattgtccctcactgactccatccctg 309
Query: 879 t 879
|
Sbjct: 310 t 310
Score = 54.0 bits (27), Expect = 5e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 712 gatcattgtgattattaacaaacaacctggtgtgatgacgcttctggaccacgacaaaag 771
|||||||||| || | | |||||| ||| ||||||||||||||||| ||||| ||||| |
Sbjct: 60 gatcattgtggttctgagcaaacagcctcgtgtgatgacgcttctgcaccaccacaaatg 119
Query: 772 taactgg 778
| |||||
Sbjct: 120 tcactgg 126
>gb|BP647257.1|BP647257 BP647257 RAFL19 Arabidopsis thaliana cDNA clone RAFL19-74-N21 3',
mRNA sequence
Length = 408
Score = 65.9 bits (33), Expect = 1e-008
Identities = 82/97 (84%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
|||||||||||||| || ||||| | || ||||| ||||| ||||| |||||||| |||
Sbjct: 312 tctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcaggggga 371
Query: 474 acgattgata-ctgagcgtgtgcacctggcatacgtg 509
|| ||||| | ||||||||||||| || |||||||||
Sbjct: 372 acaattgaaacctgagcgtgtgcatcttgcatacgtg 408
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 262 agcagtagaacatgacgcgcttcac 286
|||||||||||||||| ||||||||
Sbjct: 164 agcagtagaacatgacacgcttcac 188
>gb|AC020889.3|AC020889 Genomic sequence for Arabidopsis thaliana BAC T1N15 from chromosome
I, complete sequence
Length = 95295
Score = 65.9 bits (33), Expect = 1e-008
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 819 atggcatcaagttcgtacaacagaacttggtagaactgtccctcactgacaccatccctg 878
|||||||||||||| || | || ||||||||| || |||||||||||||| |||||||||
Sbjct: 2195 atggcatcaagttcatagagcaaaacttggtaaaattgtccctcactgactccatccctg 2254
Query: 879 t 879
|
Sbjct: 2255 t 2255
Score = 60.0 bits (30), Expect = 8e-007
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 504 tacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatttgttctca 563
||||||||||| ||||| ||||| |||| ||| | ||||| || ||||| |||||||||
Sbjct: 1623 tacgtgtaacataagttattggtcagagattgaagtccatctgcagtaaagttgttctca 1682
Query: 564 tcccacagaacatgataatgggcagg 589
||||| ||||| || ||||| |||||
Sbjct: 1683 tcccaaagaacgtggtaatgagcagg 1708
Score = 54.0 bits (27), Expect = 5e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 712 gatcattgtgattattaacaaacaacctggtgtgatgacgcttctggaccacgacaaaag 771
|||||||||| || | | |||||| ||| ||||||||||||||||| ||||| ||||| |
Sbjct: 2005 gatcattgtggttctgagcaaacagcctcgtgtgatgacgcttctgcaccaccacaaatg 2064
Query: 772 taactgg 778
| |||||
Sbjct: 2065 tcactgg 2071
Score = 44.1 bits (22), Expect = 0.045
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
|||||||||||||| || ||||| | || ||||| ||||| ||||| |||||||| |||
Sbjct: 1328 tctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcaggggga 1387
Query: 474 ac 475
||
Sbjct: 1388 ac 1389
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 262 agcagtagaacatgacgcgcttcac 286
|||||||||||||||| ||||||||
Sbjct: 1179 agcagtagaacatgacacgcttcac 1203
>gb|AC007932.3|F11A17 Arabidopsis thaliana chromosome 1 BAC F11A17 sequence, complete
sequence
Length = 102078
Score = 65.9 bits (33), Expect = 1e-008
Identities = 54/61 (88%)
Strand = Plus / Minus
Query: 819 atggcatcaagttcgtacaacagaacttggtagaactgtccctcactgacaccatccctg 878
|||||||||||||| || | || ||||||||| || |||||||||||||| |||||||||
Sbjct: 16761 atggcatcaagttcatagagcaaaacttggtaaaattgtccctcactgactccatccctg 16702
Query: 879 t 879
|
Sbjct: 16701 t 16701
Score = 60.0 bits (30), Expect = 8e-007
Identities = 72/86 (83%)
Strand = Plus / Minus
Query: 504 tacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatttgttctca 563
||||||||||| ||||| ||||| |||| ||| | ||||| || ||||| |||||||||
Sbjct: 17333 tacgtgtaacataagttattggtcagagattgaagtccatctgcagtaaagttgttctca 17274
Query: 564 tcccacagaacatgataatgggcagg 589
||||| ||||| || ||||| |||||
Sbjct: 17273 tcccaaagaacgtggtaatgagcagg 17248
Score = 54.0 bits (27), Expect = 5e-005
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 712 gatcattgtgattattaacaaacaacctggtgtgatgacgcttctggaccacgacaaaag 771
|||||||||| || | | |||||| ||| ||||||||||||||||| ||||| ||||| |
Sbjct: 16951 gatcattgtggttctgagcaaacagcctcgtgtgatgacgcttctgcaccaccacaaatg 16892
Query: 772 taactgg 778
| |||||
Sbjct: 16891 tcactgg 16885
Score = 44.1 bits (22), Expect = 0.045
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
|||||||||||||| || ||||| | || ||||| ||||| ||||| |||||||| |||
Sbjct: 17628 tctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcaggggga 17569
Query: 474 ac 475
||
Sbjct: 17568 ac 17567
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 262 agcagtagaacatgacgcgcttcac 286
|||||||||||||||| ||||||||
Sbjct: 17777 agcagtagaacatgacacgcttcac 17753
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 65.9 bits (33), Expect = 1e-008
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 819 atggcatcaagttcgtacaacagaacttggtagaactgtccctcactgacaccatccctg 878
|||||||||||||| || | || ||||||||| || |||||||||||||| |||||||||
Sbjct: 2246565 atggcatcaagttcatagagcaaaacttggtaaaattgtccctcactgactccatccctg 2246624
Query: 879 t 879
|
Sbjct: 2246625 t 2246625
Score = 60.0 bits (30), Expect = 8e-007
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 504 tacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatttgttctca 563
||||||||||| ||||| ||||| |||| ||| | ||||| || ||||| |||||||||
Sbjct: 2245993 tacgtgtaacataagttattggtcagagattgaagtccatctgcagtaaagttgttctca 2246052
Query: 564 tcccacagaacatgataatgggcagg 589
||||| ||||| || ||||| |||||
Sbjct: 2246053 tcccaaagaacgtggtaatgagcagg 2246078
Score = 54.0 bits (27), Expect = 5e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 712 gatcattgtgattattaacaaacaacctggtgtgatgacgcttctggaccacgacaaaag 771
|||||||||| || | | |||||| ||| ||||||||||||||||| ||||| ||||| |
Sbjct: 2246375 gatcattgtggttctgagcaaacagcctcgtgtgatgacgcttctgcaccaccacaaatg 2246434
Query: 772 taactgg 778
| |||||
Sbjct: 2246435 tcactgg 2246441
Score = 44.1 bits (22), Expect = 0.045
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
|||||||||||||| || ||||| | || ||||| ||||| ||||| |||||||| |||
Sbjct: 2245698 tctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcaggggga 2245757
Query: 474 ac 475
||
Sbjct: 2245758 ac 2245759
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 262 agcagtagaacatgacgcgcttcac 286
|||||||||||||||| ||||||||
Sbjct: 2245549 agcagtagaacatgacacgcttcac 2245573
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 65.9 bits (33), Expect = 1e-008
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 819 atggcatcaagttcgtacaacagaacttggtagaactgtccctcactgacaccatccctg 878
|||||||||||||| || | || ||||||||| || |||||||||||||| |||||||||
Sbjct: 17890971 atggcatcaagttcatagagcaaaacttggtaaaattgtccctcactgactccatccctg 17891030
Query: 879 t 879
|
Sbjct: 17891031 t 17891031
Score = 60.0 bits (30), Expect = 8e-007
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 504 tacgtgtaacacaagttgttggtgagagtttgcaacccatcagccgtaaatttgttctca 563
||||||||||| ||||| ||||| |||| ||| | ||||| || ||||| |||||||||
Sbjct: 17890399 tacgtgtaacataagttattggtcagagattgaagtccatctgcagtaaagttgttctca 17890458
Query: 564 tcccacagaacatgataatgggcagg 589
||||| ||||| || ||||| |||||
Sbjct: 17890459 tcccaaagaacgtggtaatgagcagg 17890484
Score = 54.0 bits (27), Expect = 5e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 712 gatcattgtgattattaacaaacaacctggtgtgatgacgcttctggaccacgacaaaag 771
|||||||||| || | | |||||| ||| ||||||||||||||||| ||||| ||||| |
Sbjct: 17890781 gatcattgtggttctgagcaaacagcctcgtgtgatgacgcttctgcaccaccacaaatg 17890840
Query: 772 taactgg 778
| |||||
Sbjct: 17890841 tcactgg 17890847
Score = 44.1 bits (22), Expect = 0.045
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 414 tctggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggagga 473
|||||||||||||| || ||||| | || ||||| ||||| ||||| |||||||| |||
Sbjct: 17890104 tctggctccatgtagaatcgagccctaaaagctgctagatgtgcataatatgcaggggga 17890163
Query: 474 ac 475
||
Sbjct: 17890164 ac 17890165
Score = 42.1 bits (21), Expect = 0.18
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 262 agcagtagaacatgacgcgcttcac 286
|||||||||||||||| ||||||||
Sbjct: 17889955 agcagtagaacatgacacgcttcac 17889979
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 362,258
Number of Sequences: 1013581
Number of extensions: 362258
Number of successful extensions: 24970
Number of sequences better than 0.5: 80
Number of HSP's better than 0.5 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24153
Number of HSP's gapped (non-prelim): 796
length of query: 977
length of database: 908,940,872
effective HSP length: 20
effective length of query: 957
effective length of database: 888,669,252
effective search space: 850456474164
effective search space used: 850456474164
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)