BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3588987.2.1
(487 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY140001.1| Arabidopsis thaliana stress-induced protein ... 56 6e-006
ref|NM_117310.2| Arabidopsis thaliana unknown protein AT4G1... 56 6e-006
ref|NM_001036543.1| Arabidopsis thaliana unknown protein AT... 56 6e-006
gb|AV562691.1|AV562691 AV562691 Arabidopsis thaliana green ... 48 0.001
gb|AV565803.1|AV565803 AV565803 Arabidopsis thaliana green ... 48 0.001
gb|AY064967.1| Arabidopsis thaliana At1g12270/F5O11_1 mRNA,... 48 0.001
gb|BT000651.1| Arabidopsis thaliana At1g12270/F5O11_1 mRNA,... 48 0.001
emb|AJ319538.1|ATH319538 Arabidopsis thaliana partial mRNA ... 48 0.001
ref|NM_101099.4| Arabidopsis thaliana unknown protein AT1G1... 48 0.001
gb|AV564598.1|AV564598 AV564598 Arabidopsis thaliana green ... 46 0.006
gb|AV802721.1|AV802721 AV802721 RAFL9 Arabidopsis thaliana ... 44 0.022
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 44 0.022
dbj|BD248411.1| Gene participating in tolerance against env... 44 0.022
gb|AC025416.4|AC025416 Genomic sequence for Arabidopsis tha... 44 0.022
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 44 0.022
emb|AL080318.1|ATT4C9 Arabidopsis thaliana DNA chromosome 4... 44 0.022
emb|AL049730.2|ATT1P17 Arabidopsis thaliana DNA chromosome ... 44 0.022
emb|AL161534.2|ATCHRIV34 Arabidopsis thaliana DNA chromosom... 44 0.022
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 44 0.022
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 44 0.022
gb|AV555790.1|AV555790 AV555790 Arabidopsis thaliana green ... 42 0.087
>gb|AY140001.1| Arabidopsis thaliana stress-induced protein sti1-like protein
(At4g12400) mRNA, complete cds
Length = 2066
Score = 56.0 bits (28), Expect = 6e-006
Identities = 78/95 (82%)
Strand = Plus / Minus
Query: 392 gctcgccttggtgatctgttcaacacacctccttacaccatcaagtaactcctggttttt 451
|||||| ||| | |||||||| ||||| || || ||||||||||| ||||||||||| ||
Sbjct: 1589 gctcgctttgtttatctgttccacacatcttctaacaccatcaaggaactcctggttctt 1530
Query: 452 cgggncatgctttaggccagcttgataagtttcca 486
|| |||| ||||| || ||||||| |||||||
Sbjct: 1529 aggatcatgttttagcccttcttgatacgtttcca 1495
>ref|NM_117310.2| Arabidopsis thaliana unknown protein AT4G12400 transcript variant
AT4G12400.1 mRNA, complete cds
Length = 2064
Score = 56.0 bits (28), Expect = 6e-006
Identities = 78/95 (82%)
Strand = Plus / Minus
Query: 392 gctcgccttggtgatctgttcaacacacctccttacaccatcaagtaactcctggttttt 451
|||||| ||| | |||||||| ||||| || || ||||||||||| ||||||||||| ||
Sbjct: 1586 gctcgctttgtttatctgttccacacatcttctaacaccatcaaggaactcctggttctt 1527
Query: 452 cgggncatgctttaggccagcttgataagtttcca 486
|| |||| ||||| || ||||||| |||||||
Sbjct: 1526 aggatcatgttttagcccttcttgatacgtttcca 1492
>ref|NM_001036543.1| Arabidopsis thaliana unknown protein AT4G12400 transcript variant
AT4G12400.2 mRNA, complete cds
Length = 2006
Score = 56.0 bits (28), Expect = 6e-006
Identities = 78/95 (82%)
Strand = Plus / Minus
Query: 392 gctcgccttggtgatctgttcaacacacctccttacaccatcaagtaactcctggttttt 451
|||||| ||| | |||||||| ||||| || || ||||||||||| ||||||||||| ||
Sbjct: 1586 gctcgctttgtttatctgttccacacatcttctaacaccatcaaggaactcctggttctt 1527
Query: 452 cgggncatgctttaggccagcttgataagtttcca 486
|| |||| ||||| || ||||||| |||||||
Sbjct: 1526 aggatcatgttttagcccttcttgatacgtttcca 1492
>gb|AV562691.1|AV562691 AV562691 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ174d01F 3', mRNA sequence
Length = 553
Score = 48.1 bits (24), Expect = 0.001
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 306 ggatcagtcaggatgttctggatctcagggtcttgcatggctttgttctgtctctctttc 365
||||| || |||||||||||||| || ||||||||||| | || |||||||||||||
Sbjct: 290 ggatctgtgaggatgttctggatttctgggtcttgcattccctttgcctgtctctctttc 349
Query: 366 agttcctc 373
| ||||||
Sbjct: 350 aattcctc 357
>gb|AV565803.1|AV565803 AV565803 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ231a11F 3', mRNA sequence
Length = 452
Score = 48.1 bits (24), Expect = 0.001
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 306 ggatcagtcaggatgttctggatctcagggtcttgcatggctttgttctgtctctctttc 365
||||| || |||||||||||||| || ||||||||||| | || |||||||||||||
Sbjct: 279 ggatctgtgaggatgttctggatttctgggtcttgcattccctttgcctgtctctctttc 338
Query: 366 agttcctc 373
| ||||||
Sbjct: 339 aattcctc 346
>gb|AY064967.1| Arabidopsis thaliana At1g12270/F5O11_1 mRNA, complete cds
Length = 1943
Score = 48.1 bits (24), Expect = 0.001
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 306 ggatcagtcaggatgttctggatctcagggtcttgcatggctttgttctgtctctctttc 365
||||| || |||||||||||||| || ||||||||||| | || |||||||||||||
Sbjct: 1622 ggatctgtgaggatgttctggatttctgggtcttgcattccctttgcctgtctctctttc 1563
Query: 366 agttcctc 373
| ||||||
Sbjct: 1562 aattcctc 1555
>gb|BT000651.1| Arabidopsis thaliana At1g12270/F5O11_1 mRNA, complete cds
Length = 1719
Score = 48.1 bits (24), Expect = 0.001
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 306 ggatcagtcaggatgttctggatctcagggtcttgcatggctttgttctgtctctctttc 365
||||| || |||||||||||||| || ||||||||||| | || |||||||||||||
Sbjct: 1592 ggatctgtgaggatgttctggatttctgggtcttgcattccctttgcctgtctctctttc 1533
Query: 366 agttcctc 373
| ||||||
Sbjct: 1532 aattcctc 1525
>emb|AJ319538.1|ATH319538 Arabidopsis thaliana partial mRNA for stil-like (stil gene)
Length = 720
Score = 48.1 bits (24), Expect = 0.001
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 306 ggatcagtcaggatgttctggatctcagggtcttgcatggctttgttctgtctctctttc 365
||||| || |||||||||||||| || ||||||||||| | || |||||||||||||
Sbjct: 372 ggatctgtgaggatgttctggatttctgggtcttgcattccctttgcctgtctctctttc 313
Query: 366 agttcctc 373
| ||||||
Sbjct: 312 aattcctc 305
>ref|NM_101099.4| Arabidopsis thaliana unknown protein AT1G12270 mRNA, complete cds
Length = 1949
Score = 48.1 bits (24), Expect = 0.001
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 306 ggatcagtcaggatgttctggatctcagggtcttgcatggctttgttctgtctctctttc 365
||||| || |||||||||||||| || ||||||||||| | || |||||||||||||
Sbjct: 1622 ggatctgtgaggatgttctggatttctgggtcttgcattccctttgcctgtctctctttc 1563
Query: 366 agttcctc 373
| ||||||
Sbjct: 1562 aattcctc 1555
>gb|AV564598.1|AV564598 AV564598 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ207b04F 3', mRNA sequence
Length = 414
Score = 46.1 bits (23), Expect = 0.006
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 315 aggatgttctggatctcagggtcttgcatggctttgttctgtctctctttcagttcctc 373
|||||||||||||| || ||||||||||| | || |||||||||||||| ||||||
Sbjct: 288 aggatgttctggatttctgggtcttgcattccctttgcctgtctctctttcaattcctc 346
>gb|AV802721.1|AV802721 AV802721 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-32-P19 3',
mRNA sequence
Length = 398
Score = 44.1 bits (22), Expect = 0.022
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 306 ggatcagtcaggatgttctggatctcagggtcttgcat 343
||||| || |||||||||||||| || |||||||||||
Sbjct: 322 ggatctgtgaggatgttctggatttctgggtcttgcat 359
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 44.1 bits (22), Expect = 0.022
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 306 ggatcagtcaggatgttctggatctcagggtcttgcat 343
||||| || |||||||||||||| || |||||||||||
Sbjct: 4174079 ggatctgtgaggatgttctggatttctgggtcttgcat 4174042
>dbj|BD248411.1| Gene participating in tolerance against environmental stress
Length = 2640
Score = 44.1 bits (22), Expect = 0.022
Identities = 51/61 (83%)
Strand = Plus / Minus
Query: 426 acaccatcaagtaactcctggtttttcgggncatgctttaggccagcttgataagtttcc 485
||||||||||| ||||||||||| || || |||| ||||| || ||||||| ||||||
Sbjct: 2120 acaccatcaaggaactcctggttcttaggatcatgttttagcccttcttgatacgtttcc 2061
Query: 486 a 486
|
Sbjct: 2060 a 2060
>gb|AC025416.4|AC025416 Genomic sequence for Arabidopsis thaliana BAC F5O11 from chromosome
I, complete sequence
Length = 118374
Score = 44.1 bits (22), Expect = 0.022
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 306 ggatcagtcaggatgttctggatctcagggtcttgcat 343
||||| || |||||||||||||| || |||||||||||
Sbjct: 3582 ggatctgtgaggatgttctggatttctgggtcttgcat 3545
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 44.1 bits (22), Expect = 0.022
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 426 acaccatcaagtaactcctggtttttcgggncatgctttaggccagcttgataagtttcc 485
||||||||||| ||||||||||| || || |||| ||||| || ||||||| ||||||
Sbjct: 3252000 acaccatcaaggaactcctggttcttaggatcatgttttagcccttcttgatacgtttcc 3252059
Query: 486 a 486
|
Sbjct: 3252060 a 3252060
>emb|AL080318.1|ATT4C9 Arabidopsis thaliana DNA chromosome 4, BAC clone T4C9 (ESSA project)
Length = 85356
Score = 44.1 bits (22), Expect = 0.022
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 426 acaccatcaagtaactcctggtttttcgggncatgctttaggccagcttgataagtttcc 485
||||||||||| ||||||||||| || || |||| ||||| || ||||||| ||||||
Sbjct: 73361 acaccatcaaggaactcctggttcttaggatcatgttttagcccttcttgatacgtttcc 73420
Query: 486 a 486
|
Sbjct: 73421 a 73421
>emb|AL049730.2|ATT1P17 Arabidopsis thaliana DNA chromosome 4, BAC clone T1P17 (ESSA project)
Length = 137519
Score = 44.1 bits (22), Expect = 0.022
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 426 acaccatcaagtaactcctggtttttcgggncatgctttaggccagcttgataagtttcc 485
||||||||||| ||||||||||| || || |||| ||||| || ||||||| ||||||
Sbjct: 6859 acaccatcaaggaactcctggttcttaggatcatgttttagcccttcttgatacgtttcc 6918
Query: 486 a 486
|
Sbjct: 6919 a 6919
>emb|AL161534.2|ATCHRIV34 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 34
Length = 196107
Score = 44.1 bits (22), Expect = 0.022
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 426 acaccatcaagtaactcctggtttttcgggncatgctttaggccagcttgataagtttcc 485
||||||||||| ||||||||||| || || |||| ||||| || ||||||| ||||||
Sbjct: 11390 acaccatcaaggaactcctggttcttaggatcatgttttagcccttcttgatacgtttcc 11449
Query: 486 a 486
|
Sbjct: 11450 a 11450
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 44.1 bits (22), Expect = 0.022
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 426 acaccatcaagtaactcctggtttttcgggncatgctttaggccagcttgataagtttcc 485
||||||||||| ||||||||||| || || |||| ||||| || ||||||| ||||||
Sbjct: 7339261 acaccatcaaggaactcctggttcttaggatcatgttttagcccttcttgatacgtttcc 7339320
Query: 486 a 486
|
Sbjct: 7339321 a 7339321
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 44.1 bits (22), Expect = 0.022
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 306 ggatcagtcaggatgttctggatctcagggtcttgcat 343
||||| || |||||||||||||| || |||||||||||
Sbjct: 4174255 ggatctgtgaggatgttctggatttctgggtcttgcat 4174218
>gb|AV555790.1|AV555790 AV555790 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ025f10F 3', mRNA sequence
Length = 469
Score = 42.1 bits (21), Expect = 0.087
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 315 aggatgttctggatctcagggtcttgcat 343
|||||||||||||| || |||||||||||
Sbjct: 320 aggatgttctggatttctgggtcttgcat 348
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 216,470
Number of Sequences: 1013581
Number of extensions: 216470
Number of successful extensions: 14834
Number of sequences better than 0.5: 21
Number of HSP's better than 0.5 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14494
Number of HSP's gapped (non-prelim): 333
length of query: 487
length of database: 908,940,872
effective HSP length: 20
effective length of query: 467
effective length of database: 888,669,252
effective search space: 415008540684
effective search space used: 415008540684
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)