BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3438088.2.1
(615 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV782845.1|AV782845 AV782845 RAFL5 Arabidopsis thaliana ... 68 2e-009
gb|AF074092.1|AF074092 Arabidopsis thaliana cellulase (DEC)... 68 2e-009
gb|AF074375.1|AF074375 Arabidopsis thaliana cellulase (DEC)... 68 2e-009
gb|AF073875.1|AF073875 Arabidopsis thaliana endo-1,4-beta-D... 68 2e-009
gb|U37702.1|ATU37702 Arabidopsis thaliana cellulase (OR16pe... 68 2e-009
emb|A83259.1| Sequence 1 from Patent WO9850568 68 2e-009
gb|AY037218.1| Arabidopsis thaliana AT5g49720/K2I5_8 mRNA, ... 68 2e-009
dbj|E64634.1| Method for modifying plant cell wall component 68 2e-009
dbj|E64635.1| Method for modifying plant cell wall component 68 2e-009
gb|BT002221.1| Arabidopsis thaliana At5g49720/K2I5_8 mRNA, ... 68 2e-009
gb|AY086165.1| Arabidopsis thaliana clone 21922 mRNA, compl... 68 2e-009
dbj|AB025613.1| Arabidopsis thaliana genomic DNA, chromosom... 68 2e-009
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 68 2e-009
dbj|AK222193.1| Arabidopsis thaliana mRNA for cellulase hom... 68 2e-009
ref|NM_124350.2| Arabidopsis thaliana KOR1 (KORRIGAN); hydr... 68 2e-009
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 68 2e-009
gb|CW800642.1|CW800642 WiscDsLox329F10 Arabidopsis thaliana... 54 3e-005
gb|AV544338.1|AV544338 AV544338 Arabidopsis thaliana roots ... 54 3e-005
gb|CK119494.1|CK119494 212c03.p1 AtM1 Arabidopsis thaliana ... 54 3e-005
gb|BP566215.1|BP566215 BP566215 RAFL14 Arabidopsis thaliana... 46 0.007
gb|BP569115.1|BP569115 BP569115 RAFL14 Arabidopsis thaliana... 46 0.007
gb|BP578407.1|BP578407 BP578407 RAFL14 Arabidopsis thaliana... 46 0.007
gb|BP795447.1|BP795447 BP795447 RAFL7 Arabidopsis thaliana ... 46 0.007
gb|CK120241.1|CK120241 208b21.p1 AtM1 Arabidopsis thaliana ... 42 0.11
gb|BP617067.1|BP617067 BP617067 RAFL16 Arabidopsis thaliana... 42 0.11
gb|BX836668.1|BX836668 BX836668 Arabidopsis thaliana Flower... 40 0.44
gb|BP620484.1|BP620484 BP620484 RAFL16 Arabidopsis thaliana... 40 0.44
>gb|AV782845.1|AV782845 AV782845 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-02-G06 3',
mRNA sequence
Length = 693
Score = 67.9 bits (34), Expect = 2e-009
Identities = 130/162 (80%)
Strand = Plus / Plus
Query: 351 gcgactagaccagcgttgcccgccagcgttgcttcagtgtagttgtagttcctgcgggca 410
|||||||||||||| ||||| || || || | ||||||||||||||||||| | ||| ||
Sbjct: 446 gcgactagaccagcattgcctgcaagagtcggttcagtgtagttgtagttcatacggaca 505
Query: 411 tctttgaacccgtcatggcggtcggggccagcaaccatggcacctgctatggtattaggg 470
|| | ||||||| | ||| || |||||||||||||| ||| | || || || |||
Sbjct: 506 tcacggtacccgtcgcgcttgtcaggaccagcaaccatggctccttcaatcgtgtttggg 565
Query: 471 tttggcttcttggcgtccctccacttccaccctcctttgcag 512
||||| |||||| ||| ||||| ||||| ||||||||||||
Sbjct: 566 tttggtttcttgctgtctctccatttccatcctcctttgcag 607
>gb|AF074092.1|AF074092 Arabidopsis thaliana cellulase (DEC) gene, complete cds
Length = 4033
Score = 67.9 bits (34), Expect = 2e-009
Identities = 130/162 (80%)
Strand = Plus / Minus
Query: 351 gcgactagaccagcgttgcccgccagcgttgcttcagtgtagttgtagttcctgcgggca 410
|||||||||||||| ||||| || || || | ||||||||||||||||||| | ||| ||
Sbjct: 3267 gcgactagaccagcattgcctgcaagagtcggttcagtgtagttgtagttcatacggaca 3208
Query: 411 tctttgaacccgtcatggcggtcggggccagcaaccatggcacctgctatggtattaggg 470
|| | ||||||| | ||| || |||||||||||||| ||| | || || || |||
Sbjct: 3207 tcacggtacccgtcgcgcttgtcaggaccagcaaccatggctccttcaatcgtgtttggg 3148
Query: 471 tttggcttcttggcgtccctccacttccaccctcctttgcag 512
||||| |||||| ||| ||||| ||||| ||||||||||||
Sbjct: 3147 tttggtttcttgctgtctctccatttccatcctcctttgcag 3106
>gb|AF074375.1|AF074375 Arabidopsis thaliana cellulase (DEC) mRNA, complete cds
Length = 2179
Score = 67.9 bits (34), Expect = 2e-009
Identities = 130/162 (80%)
Strand = Plus / Minus
Query: 351 gcgactagaccagcgttgcccgccagcgttgcttcagtgtagttgtagttcctgcgggca 410
|||||||||||||| ||||| || || || | ||||||||||||||||||| | ||| ||
Sbjct: 1805 gcgactagaccagcattgcctgcaagagtcggttcagtgtagttgtagttcatacggaca 1746
Query: 411 tctttgaacccgtcatggcggtcggggccagcaaccatggcacctgctatggtattaggg 470
|| | ||||||| | ||| || |||||||||||||| ||| | || || || |||
Sbjct: 1745 tcacggtacccgtcgcgcttgtcaggaccagcaaccatggctccttcaatcgtgtttggg 1686
Query: 471 tttggcttcttggcgtccctccacttccaccctcctttgcag 512
||||| |||||| ||| ||||| ||||| ||||||||||||
Sbjct: 1685 tttggtttcttgctgtctctccatttccatcctcctttgcag 1644
>gb|AF073875.1|AF073875 Arabidopsis thaliana endo-1,4-beta-D-glucanase KORRIGAN (KOR) gene,
KOR-1 allele, complete cds
Length = 2873
Score = 67.9 bits (34), Expect = 2e-009
Identities = 130/162 (80%)
Strand = Plus / Minus
Query: 351 gcgactagaccagcgttgcccgccagcgttgcttcagtgtagttgtagttcctgcgggca 410
|||||||||||||| ||||| || || || | ||||||||||||||||||| | ||| ||
Sbjct: 2428 gcgactagaccagcattgcctgcaagagtcggttcagtgtagttgtagttcatacggaca 2369
Query: 411 tctttgaacccgtcatggcggtcggggccagcaaccatggcacctgctatggtattaggg 470
|| | ||||||| | ||| || |||||||||||||| ||| | || || || |||
Sbjct: 2368 tcacggtacccgtcgcgcttgtcaggaccagcaaccatggctccttcaatcgtgtttggg 2309
Query: 471 tttggcttcttggcgtccctccacttccaccctcctttgcag 512
||||| |||||| ||| ||||| ||||| ||||||||||||
Sbjct: 2308 tttggtttcttgctgtctctccatttccatcctcctttgcag 2267
>gb|U37702.1|ATU37702 Arabidopsis thaliana cellulase (OR16pep) mRNA, complete cds
Length = 2257
Score = 67.9 bits (34), Expect = 2e-009
Identities = 130/162 (80%)
Strand = Plus / Minus
Query: 351 gcgactagaccagcgttgcccgccagcgttgcttcagtgtagttgtagttcctgcgggca 410
|||||||||||||| ||||| || || || | ||||||||||||||||||| | ||| ||
Sbjct: 1812 gcgactagaccagcattgcctgcaagagtcggttcagtgtagttgtagttcatacggaca 1753
Query: 411 tctttgaacccgtcatggcggtcggggccagcaaccatggcacctgctatggtattaggg 470
|| | ||||||| | ||| || |||||||||||||| ||| | || || || |||
Sbjct: 1752 tcacggtacccgtcgcgcttgtcaggaccagcaaccatggctccttcaatcgtgtttggg 1693
Query: 471 tttggcttcttggcgtccctccacttccaccctcctttgcag 512
||||| |||||| ||| ||||| ||||| ||||||||||||
Sbjct: 1692 tttggtttcttgctgtctctccatttccatcctcctttgcag 1651
>emb|A83259.1| Sequence 1 from Patent WO9850568
Length = 2257
Score = 67.9 bits (34), Expect = 2e-009
Identities = 130/162 (80%)
Strand = Plus / Minus
Query: 351 gcgactagaccagcgttgcccgccagcgttgcttcagtgtagttgtagttcctgcgggca 410
|||||||||||||| ||||| || || || | ||||||||||||||||||| | ||| ||
Sbjct: 1812 gcgactagaccagcattgcctgcaagagtcggttcagtgtagttgtagttcatacggaca 1753
Query: 411 tctttgaacccgtcatggcggtcggggccagcaaccatggcacctgctatggtattaggg 470
|| | ||||||| | ||| || |||||||||||||| ||| | || || || |||
Sbjct: 1752 tcacggtacccgtcgcgcttgtcaggaccagcaaccatggctccttcaatcgtgtttggg 1693
Query: 471 tttggcttcttggcgtccctccacttccaccctcctttgcag 512
||||| |||||| ||| ||||| ||||| ||||||||||||
Sbjct: 1692 tttggtttcttgctgtctctccatttccatcctcctttgcag 1651
>gb|AY037218.1| Arabidopsis thaliana AT5g49720/K2I5_8 mRNA, complete cds
Length = 2307
Score = 67.9 bits (34), Expect = 2e-009
Identities = 130/162 (80%)
Strand = Plus / Minus
Query: 351 gcgactagaccagcgttgcccgccagcgttgcttcagtgtagttgtagttcctgcgggca 410
|||||||||||||| ||||| || || || | ||||||||||||||||||| | ||| ||
Sbjct: 1862 gcgactagaccagcattgcctgcaagagtcggttcagtgtagttgtagttcatacggaca 1803
Query: 411 tctttgaacccgtcatggcggtcggggccagcaaccatggcacctgctatggtattaggg 470
|| | ||||||| | ||| || |||||||||||||| ||| | || || || |||
Sbjct: 1802 tcacggtacccgtcgcgcttgtcaggaccagcaaccatggctccttcaatcgtgtttggg 1743
Query: 471 tttggcttcttggcgtccctccacttccaccctcctttgcag 512
||||| |||||| ||| ||||| ||||| ||||||||||||
Sbjct: 1742 tttggtttcttgctgtctctccatttccatcctcctttgcag 1701
>dbj|E64634.1| Method for modifying plant cell wall component
Length = 2257
Score = 67.9 bits (34), Expect = 2e-009
Identities = 130/162 (80%)
Strand = Plus / Minus
Query: 351 gcgactagaccagcgttgcccgccagcgttgcttcagtgtagttgtagttcctgcgggca 410
|||||||||||||| ||||| || || || | ||||||||||||||||||| | ||| ||
Sbjct: 1812 gcgactagaccagcattgcctgcaagagtcggttcagtgtagttgtagttcatacggaca 1753
Query: 411 tctttgaacccgtcatggcggtcggggccagcaaccatggcacctgctatggtattaggg 470
|| | ||||||| | ||| || |||||||||||||| ||| | || || || |||
Sbjct: 1752 tcacggtacccgtcgcgcttgtcaggaccagcaaccatggctccttcaatcgtgtttggg 1693
Query: 471 tttggcttcttggcgtccctccacttccaccctcctttgcag 512
||||| |||||| ||| ||||| ||||| ||||||||||||
Sbjct: 1692 tttggtttcttgctgtctctccatttccatcctcctttgcag 1651
>dbj|E64635.1| Method for modifying plant cell wall component
Length = 12319
Score = 67.9 bits (34), Expect = 2e-009
Identities = 130/162 (80%)
Strand = Plus / Minus
Query: 351 gcgactagaccagcgttgcccgccagcgttgcttcagtgtagttgtagttcctgcgggca 410
|||||||||||||| ||||| || || || | ||||||||||||||||||| | ||| ||
Sbjct: 5726 gcgactagaccagcattgcctgcaagagtcggttcagtgtagttgtagttcatacggaca 5667
Query: 411 tctttgaacccgtcatggcggtcggggccagcaaccatggcacctgctatggtattaggg 470
|| | ||||||| | ||| || |||||||||||||| ||| | || || || |||
Sbjct: 5666 tcacggtacccgtcgcgcttgtcaggaccagcaaccatggctccttcaatcgtgtttggg 5607
Query: 471 tttggcttcttggcgtccctccacttccaccctcctttgcag 512
||||| |||||| ||| ||||| ||||| ||||||||||||
Sbjct: 5606 tttggtttcttgctgtctctccatttccatcctcctttgcag 5565
>gb|BT002221.1| Arabidopsis thaliana At5g49720/K2I5_8 mRNA, complete cds
Length = 1866
Score = 67.9 bits (34), Expect = 2e-009
Identities = 130/162 (80%)
Strand = Plus / Minus
Query: 351 gcgactagaccagcgttgcccgccagcgttgcttcagtgtagttgtagttcctgcgggca 410
|||||||||||||| ||||| || || || | ||||||||||||||||||| | ||| ||
Sbjct: 1742 gcgactagaccagcattgcctgcaagagtcggttcagtgtagttgtagttcatacggaca 1683
Query: 411 tctttgaacccgtcatggcggtcggggccagcaaccatggcacctgctatggtattaggg 470
|| | ||||||| | ||| || |||||||||||||| ||| | || || || |||
Sbjct: 1682 tcacggtacccgtcgcgcttgtcaggaccagcaaccatggctccttcaatcgtgtttggg 1623
Query: 471 tttggcttcttggcgtccctccacttccaccctcctttgcag 512
||||| |||||| ||| ||||| ||||| ||||||||||||
Sbjct: 1622 tttggtttcttgctgtctctccatttccatcctcctttgcag 1581
>gb|AY086165.1| Arabidopsis thaliana clone 21922 mRNA, complete sequence
Length = 2303
Score = 67.9 bits (34), Expect = 2e-009
Identities = 130/162 (80%)
Strand = Plus / Minus
Query: 351 gcgactagaccagcgttgcccgccagcgttgcttcagtgtagttgtagttcctgcgggca 410
|||||||||||||| ||||| || || || | ||||||||||||||||||| | ||| ||
Sbjct: 1862 gcgactagaccagcattgcctgcaagagtcggttcagtgtagttgtagttcatacggaca 1803
Query: 411 tctttgaacccgtcatggcggtcggggccagcaaccatggcacctgctatggtattaggg 470
|| | ||||||| | ||| || |||||||||||||| ||| | || || || |||
Sbjct: 1802 tcacggtacccgtcgcgcttgtcaggaccagcaaccatggctccttcaatcgtgtttggg 1743
Query: 471 tttggcttcttggcgtccctccacttccaccctcctttgcag 512
||||| |||||| ||| ||||| ||||| ||||||||||||
Sbjct: 1742 tttggtttcttgctgtctctccatttccatcctcctttgcag 1701
>dbj|AB025613.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K2I5
Length = 71807
Score = 67.9 bits (34), Expect = 2e-009
Identities = 130/162 (80%)
Strand = Plus / Plus
Query: 351 gcgactagaccagcgttgcccgccagcgttgcttcagtgtagttgtagttcctgcgggca 410
|||||||||||||| ||||| || || || | ||||||||||||||||||| | ||| ||
Sbjct: 34894 gcgactagaccagcattgcctgcaagagtcggttcagtgtagttgtagttcatacggaca 34953
Query: 411 tctttgaacccgtcatggcggtcggggccagcaaccatggcacctgctatggtattaggg 470
|| | ||||||| | ||| || |||||||||||||| ||| | || || || |||
Sbjct: 34954 tcacggtacccgtcgcgcttgtcaggaccagcaaccatggctccttcaatcgtgtttggg 35013
Query: 471 tttggcttcttggcgtccctccacttccaccctcctttgcag 512
||||| |||||| ||| ||||| ||||| ||||||||||||
Sbjct: 35014 tttggtttcttgctgtctctccatttccatcctcctttgcag 35055
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 67.9 bits (34), Expect = 2e-009
Identities = 130/162 (80%)
Strand = Plus / Plus
Query: 351 gcgactagaccagcgttgcccgccagcgttgcttcagtgtagttgtagttcctgcgggca 410
|||||||||||||| ||||| || || || | ||||||||||||||||||| | ||| ||
Sbjct: 18198016 gcgactagaccagcattgcctgcaagagtcggttcagtgtagttgtagttcatacggaca 18198075
Query: 411 tctttgaacccgtcatggcggtcggggccagcaaccatggcacctgctatggtattaggg 470
|| | ||||||| | ||| || |||||||||||||| ||| | || || || |||
Sbjct: 18198076 tcacggtacccgtcgcgcttgtcaggaccagcaaccatggctccttcaatcgtgtttggg 18198135
Query: 471 tttggcttcttggcgtccctccacttccaccctcctttgcag 512
||||| |||||| ||| ||||| ||||| ||||||||||||
Sbjct: 18198136 tttggtttcttgctgtctctccatttccatcctcctttgcag 18198177
>dbj|AK222193.1| Arabidopsis thaliana mRNA for cellulase homolog OR16pep precursor,
partial cds, clone: RAFL24-21-F09
Length = 1102
Score = 67.9 bits (34), Expect = 2e-009
Identities = 130/162 (80%)
Strand = Plus / Minus
Query: 351 gcgactagaccagcgttgcccgccagcgttgcttcagtgtagttgtagttcctgcgggca 410
|||||||||||||| ||||| || || || | ||||||||||||||||||| | ||| ||
Sbjct: 648 gcgactagaccagcattgcctgcaagagtcggttcagtgtagttgtagttcatacggaca 589
Query: 411 tctttgaacccgtcatggcggtcggggccagcaaccatggcacctgctatggtattaggg 470
|| | ||||||| | ||| || |||||||||||||| ||| | || || || |||
Sbjct: 588 tcacggtacccgtcgcgcttgtcaggaccagcaaccatggctccttcaatcgtgtttggg 529
Query: 471 tttggcttcttggcgtccctccacttccaccctcctttgcag 512
||||| |||||| ||| ||||| ||||| ||||||||||||
Sbjct: 528 tttggtttcttgctgtctctccatttccatcctcctttgcag 487
>ref|NM_124350.2| Arabidopsis thaliana KOR1 (KORRIGAN); hydrolase, hydrolyzing
O-glycosyl compounds AT5G49720 (KOR1) mRNA, complete cds
Length = 2360
Score = 67.9 bits (34), Expect = 2e-009
Identities = 130/162 (80%)
Strand = Plus / Minus
Query: 351 gcgactagaccagcgttgcccgccagcgttgcttcagtgtagttgtagttcctgcgggca 410
|||||||||||||| ||||| || || || | ||||||||||||||||||| | ||| ||
Sbjct: 1862 gcgactagaccagcattgcctgcaagagtcggttcagtgtagttgtagttcatacggaca 1803
Query: 411 tctttgaacccgtcatggcggtcggggccagcaaccatggcacctgctatggtattaggg 470
|| | ||||||| | ||| || |||||||||||||| ||| | || || || |||
Sbjct: 1802 tcacggtacccgtcgcgcttgtcaggaccagcaaccatggctccttcaatcgtgtttggg 1743
Query: 471 tttggcttcttggcgtccctccacttccaccctcctttgcag 512
||||| |||||| ||| ||||| ||||| ||||||||||||
Sbjct: 1742 tttggtttcttgctgtctctccatttccatcctcctttgcag 1701
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 67.9 bits (34), Expect = 2e-009
Identities = 130/162 (80%)
Strand = Plus / Plus
Query: 351 gcgactagaccagcgttgcccgccagcgttgcttcagtgtagttgtagttcctgcgggca 410
|||||||||||||| ||||| || || || | ||||||||||||||||||| | ||| ||
Sbjct: 20215115 gcgactagaccagcattgcctgcaagagtcggttcagtgtagttgtagttcatacggaca 20215174
Query: 411 tctttgaacccgtcatggcggtcggggccagcaaccatggcacctgctatggtattaggg 470
|| | ||||||| | ||| || |||||||||||||| ||| | || || || |||
Sbjct: 20215175 tcacggtacccgtcgcgcttgtcaggaccagcaaccatggctccttcaatcgtgtttggg 20215234
Query: 471 tttggcttcttggcgtccctccacttccaccctcctttgcag 512
||||| |||||| ||| ||||| ||||| ||||||||||||
Sbjct: 20215235 tttggtttcttgctgtctctccatttccatcctcctttgcag 20215276
>gb|CW800642.1|CW800642 WiscDsLox329F10 Arabidopsis thaliana T-DNA insertion flanking
sequences Arabidopsis thaliana genomic, DNA sequence
Length = 817
Score = 54.0 bits (27), Expect = 3e-005
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 351 gcgactagaccagcgttgcccgccagcgttgcttcagtgtagttgtagttc 401
|||||||||||||| ||||| || || || | |||||||||||||||||||
Sbjct: 475 gcgactagaccagcattgcctgcaagagtcggttcagtgtagttgtagttc 425
Score = 42.1 bits (21), Expect = 0.11
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 468 gggtttggcttcttggcgtccctccacttccaccctcctttgcag 512
|||||||| |||||| ||| ||||| ||||| ||||||||||||
Sbjct: 357 gggtttggtttcttgctgtctctccatttccatcctcctttgcag 313
>gb|AV544338.1|AV544338 AV544338 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ40c09F 3', mRNA sequence
Length = 433
Score = 54.0 bits (27), Expect = 3e-005
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 351 gcgactagaccagcgttgcccgccagcgttgcttcagtgtagttgtagttc 401
|||||||||||||| ||||| || || || | |||||||||||||||||||
Sbjct: 336 gcgactagaccagcattgcctgcaagagtcggttcagtgtagttgtagttc 386
>gb|CK119494.1|CK119494 212c03.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011C03212
5-PRIME, mRNA sequence
Length = 772
Score = 54.0 bits (27), Expect = 3e-005
Identities = 63/75 (84%)
Strand = Plus / Minus
Query: 438 ccagcaaccatggcacctgctatggtattagggtttggcttcttggcgtccctccacttc 497
|||||||||||||| ||| | || || || |||||||| |||||| ||| ||||| |||
Sbjct: 697 ccagcaaccatggctccttcaatcgtgtttgggtttggtttcttgctgtctctccatttc 638
Query: 498 caccctcctttgcag 512
|| ||||||||||||
Sbjct: 637 catcctcctttgcag 623
>gb|BP566215.1|BP566215 BP566215 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-52-P07 3',
mRNA sequence
Length = 464
Score = 46.1 bits (23), Expect = 0.007
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 351 gcgactagaccagcgttgcccgccagcgttgcttcagtgtagttgtagttc 401
|||||||||||||| ||||| || || || | | |||||||||||||||||
Sbjct: 401 gcgactagaccagcattgcctgcaagagtcggtccagtgtagttgtagttc 451
>gb|BP569115.1|BP569115 BP569115 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-65-K03 3',
mRNA sequence
Length = 449
Score = 46.1 bits (23), Expect = 0.007
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 351 gcgactagaccagcgttgcccgccagcgttgcttcagtgtagttgtagttc 401
|||||||||||||| ||||| || || || | | |||||||||||||||||
Sbjct: 381 gcgactagaccagcattgcctgcaagagtcggtccagtgtagttgtagttc 431
>gb|BP578407.1|BP578407 BP578407 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-18-A14 3',
mRNA sequence
Length = 443
Score = 46.1 bits (23), Expect = 0.007
Identities = 44/51 (86%)
Strand = Plus / Plus
Query: 351 gcgactagaccagcgttgcccgccagcgttgcttcagtgtagttgtagttc 401
|||||||||||||| ||||| || || || | | |||||||||||||||||
Sbjct: 381 gcgactagaccagcattgcctgcaagagtcggtccagtgtagttgtagttc 431
>gb|BP795447.1|BP795447 BP795447 RAFL7 Arabidopsis thaliana cDNA clone RAFL07-64-P11 3',
mRNA sequence
Length = 496
Score = 46.1 bits (23), Expect = 0.007
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 351 gcgactagaccagcgttgcccgccagcgttgcttcagtgtagttgta 397
|||||||||||||| ||||| || || || | |||||||||||||||
Sbjct: 450 gcgactagaccagcattgcctgcaagagtcggttcagtgtagttgta 496
>gb|CK120241.1|CK120241 208b21.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011B21208
5-PRIME, mRNA sequence
Length = 758
Score = 42.1 bits (21), Expect = 0.11
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 468 gggtttggcttcttggcgtccctccacttccaccctcctttgcag 512
|||||||| |||||| ||| ||||| ||||| ||||||||||||
Sbjct: 739 gggtttggtttcttgctgtctctccatttccatcctcctttgcag 695
>gb|BP617067.1|BP617067 BP617067 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-22-H08 3',
mRNA sequence
Length = 451
Score = 42.1 bits (21), Expect = 0.11
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 468 gggtttggcttcttggcgtccctccacttccaccctcctttgcag 512
|||||||| |||||| ||| ||||| ||||| ||||||||||||
Sbjct: 338 gggtttggtttcttgctgtctctccatttccatcctcctttgcag 382
>gb|BX836668.1|BX836668 BX836668 Arabidopsis thaliana Flowers and buds Col-0 Arabidopsis
thaliana cDNA clone GSLTFB30ZA12 3PRIM, mRNA sequence
Length = 968
Score = 40.1 bits (20), Expect = 0.44
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 251 cggcggcggcggaggcgaagggaa 274
|||||||||||||||||| |||||
Sbjct: 171 cggcggcggcggaggcgacgggaa 148
>gb|BP620484.1|BP620484 BP620484 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-37-H20 3',
mRNA sequence
Length = 424
Score = 40.1 bits (20), Expect = 0.44
Identities = 42/48 (87%), Gaps = 1/48 (2%)
Strand = Plus / Plus
Query: 351 gcgactagaccagcgttgccc-gccagcgttgcttcagtgtagttgta 397
|||||||||||||| |||||| || || || | |||||||||||||||
Sbjct: 377 gcgactagaccagcattgccctgcaagagtcggttcagtgtagttgta 424
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 286,559
Number of Sequences: 1013581
Number of extensions: 286559
Number of successful extensions: 21833
Number of sequences better than 0.5: 27
Number of HSP's better than 0.5 without gapping: 26
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 21541
Number of HSP's gapped (non-prelim): 292
length of query: 615
length of database: 908,940,872
effective HSP length: 20
effective length of query: 595
effective length of database: 888,669,252
effective search space: 528758204940
effective search space used: 528758204940
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)