BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3336950.2.1
(645 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV827337.1|AV827337 AV827337 RAFL9 Arabidopsis thaliana ... 94 4e-017
gb|BX841311.1|BX841311 BX841311 Arabidopsis thaliana Flower... 94 4e-017
gb|BP812382.1|BP812382 BP812382 RAFL19 Arabidopsis thaliana... 94 4e-017
gb|BP853835.1|BP853835 BP853835 RAFL21 Arabidopsis thaliana... 94 4e-017
gb|AF372949.1|AF372949 Arabidopsis thaliana AT3g10740/T7M13... 94 4e-017
gb|AY143944.1| Arabidopsis thaliana At3g10740/T7M13_18 mRNA... 94 4e-017
gb|AY243509.1| Arabidopsis thaliana alpha-L-arabinofuranosi... 94 4e-017
emb|BX824011.1|CNS0A4VB Arabidopsis thaliana Full-length cD... 94 4e-017
ref|NM_111911.3| Arabidopsis thaliana ASD1; hydrolase, acti... 94 4e-017
gb|BP805706.1|BP805706 BP805706 RAFL16 Arabidopsis thaliana... 86 9e-015
gb|BE522243.1|BE522243 M24F11STM Arabidopsis developing see... 78 2e-012
gb|AV825043.1|AV825043 AV825043 RAFL6 Arabidopsis thaliana ... 78 2e-012
gb|BP807146.1|BP807146 BP807146 RAFL16 Arabidopsis thaliana... 78 2e-012
gb|AY063925.1| Arabidopsis thaliana putative arabinosidase ... 78 2e-012
gb|BT006062.1| Arabidopsis thaliana clone U18147 unknown pr... 78 2e-012
gb|AY243510.1| Arabidopsis thaliana alpha-L-arabinofuranosi... 78 2e-012
emb|BX833642.1|CNS0A0L4 Arabidopsis thaliana Full-length cD... 78 2e-012
ref|NM_122513.3| Arabidopsis thaliana hydrolase, acting on ... 78 2e-012
gb|BP804915.1|BP804915 BP804915 RAFL16 Arabidopsis thaliana... 72 1e-010
gb|BP847175.1|BP847175 BP847175 RAFL21 Arabidopsis thaliana... 70 5e-010
gb|BP833955.1|BP833955 BP833955 RAFL19 Arabidopsis thaliana... 60 5e-007
gb|AC011708.8|ATAC011708 Arabidopsis thaliana chromosome II... 60 5e-007
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 60 5e-007
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 60 5e-007
dbj|AB014459.1| Arabidopsis thaliana mRNA for obtusifoliol ... 44 0.029
emb|CR402938.1| Arabidopsis thaliana T-DNA flanking sequenc... 40 0.46
gb|CW844392.1|CW844392 GT10968.Ds3.11.04.2002.jw71.186 Arab... 40 0.46
gb|BP865024.1|BP865024 BP865024 RAFL21 Arabidopsis thaliana... 40 0.46
gb|AF027174.1|AF027174 Arabidopsis thaliana cellulose synth... 40 0.46
gb|AF043351.1|AF043351 Arabidopsis thaliana adenosine-5'-ph... 40 0.46
gb|AF149413.1|T1N24 Arabidopsis thaliana BAC T1N24 40 0.46
gb|U87586.1|ATU87586 Arabidopsis thaliana decoy mRNA, compl... 40 0.46
gb|AF029262.1|AF029262 Arabidopsis thaliana putative cdc20 ... 40 0.46
gb|AF029263.1|AF029263 Arabidopsis thaliana putative cdc20 ... 40 0.46
dbj|BD022677.1| Manipulation of cellulose and/or beta-1,4-g... 40 0.46
dbj|BD022678.1| Manipulation of cellulose and/or beta-1,4-g... 40 0.46
emb|AX030944.1| Sequence 7 from Patent WO9800549 40 0.46
emb|AX030946.1| Sequence 9 from Patent WO9800549 40 0.46
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 40 0.46
>gb|AV827337.1|AV827337 AV827337 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-14-D11 5',
mRNA sequence
Length = 602
Score = 93.7 bits (47), Expect = 4e-017
Identities = 74/83 (89%)
Strand = Plus / Minus
Query: 278 ccagcttcaaaccctctgttactaacaagttcagcccatatgccaccagcccctgcatgg 337
|||||||||||||||||||| ||||||||||| ||||||| ||||| || || ||||||
Sbjct: 337 ccagcttcaaaccctctgttgctaacaagttcggcccataatccaccggcaccagcatgg 278
Query: 338 ttgatctcctcaaagaagatccc 360
||||||||||| ||||| |||||
Sbjct: 277 ttgatctcctcgaagaaaatccc 255
>gb|BX841311.1|BX841311 BX841311 Arabidopsis thaliana Flowers and buds Col-0 Arabidopsis
thaliana cDNA clone GSLTFB91ZE06 5PRIM, mRNA sequence
Length = 1098
Score = 93.7 bits (47), Expect = 4e-017
Identities = 74/83 (89%)
Strand = Plus / Minus
Query: 278 ccagcttcaaaccctctgttactaacaagttcagcccatatgccaccagcccctgcatgg 337
|||||||||||||||||||| ||||||||||| ||||||| ||||| || || ||||||
Sbjct: 322 ccagcttcaaaccctctgttgctaacaagttcggcccataatccaccggcaccagcatgg 263
Query: 338 ttgatctcctcaaagaagatccc 360
||||||||||| ||||| |||||
Sbjct: 262 ttgatctcctcgaagaaaatccc 240
>gb|BP812382.1|BP812382 BP812382 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-03-D18 5',
mRNA sequence
Length = 401
Score = 93.7 bits (47), Expect = 4e-017
Identities = 74/83 (89%)
Strand = Plus / Minus
Query: 278 ccagcttcaaaccctctgttactaacaagttcagcccatatgccaccagcccctgcatgg 337
|||||||||||||||||||| ||||||||||| ||||||| ||||| || || ||||||
Sbjct: 335 ccagcttcaaaccctctgttgctaacaagttcggcccataatccaccggcaccagcatgg 276
Query: 338 ttgatctcctcaaagaagatccc 360
||||||||||| ||||| |||||
Sbjct: 275 ttgatctcctcgaagaaaatccc 253
>gb|BP853835.1|BP853835 BP853835 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-59-J09 5',
mRNA sequence
Length = 393
Score = 93.7 bits (47), Expect = 4e-017
Identities = 74/83 (89%)
Strand = Plus / Minus
Query: 278 ccagcttcaaaccctctgttactaacaagttcagcccatatgccaccagcccctgcatgg 337
|||||||||||||||||||| ||||||||||| ||||||| ||||| || || ||||||
Sbjct: 336 ccagcttcaaaccctctgttgctaacaagttcggcccataatccaccggcaccagcatgg 277
Query: 338 ttgatctcctcaaagaagatccc 360
||||||||||| ||||| |||||
Sbjct: 276 ttgatctcctcgaagaaaatccc 254
>gb|AF372949.1|AF372949 Arabidopsis thaliana AT3g10740/T7M13_18 mRNA, complete cds
Length = 2254
Score = 93.7 bits (47), Expect = 4e-017
Identities = 74/83 (89%)
Strand = Plus / Minus
Query: 278 ccagcttcaaaccctctgttactaacaagttcagcccatatgccaccagcccctgcatgg 337
|||||||||||||||||||| ||||||||||| ||||||| ||||| || || ||||||
Sbjct: 337 ccagcttcaaaccctctgttgctaacaagttcggcccataatccaccggcaccagcatgg 278
Query: 338 ttgatctcctcaaagaagatccc 360
||||||||||| ||||| |||||
Sbjct: 277 ttgatctcctcgaagaaaatccc 255
>gb|AY143944.1| Arabidopsis thaliana At3g10740/T7M13_18 mRNA, complete cds
Length = 2037
Score = 93.7 bits (47), Expect = 4e-017
Identities = 74/83 (89%)
Strand = Plus / Minus
Query: 278 ccagcttcaaaccctctgttactaacaagttcagcccatatgccaccagcccctgcatgg 337
|||||||||||||||||||| ||||||||||| ||||||| ||||| || || ||||||
Sbjct: 263 ccagcttcaaaccctctgttgctaacaagttcggcccataatccaccggcaccagcatgg 204
Query: 338 ttgatctcctcaaagaagatccc 360
||||||||||| ||||| |||||
Sbjct: 203 ttgatctcctcgaagaaaatccc 181
>gb|AY243509.1| Arabidopsis thaliana alpha-L-arabinofuranosidase (ASD1) mRNA,
complete cds
Length = 2312
Score = 93.7 bits (47), Expect = 4e-017
Identities = 74/83 (89%)
Strand = Plus / Minus
Query: 278 ccagcttcaaaccctctgttactaacaagttcagcccatatgccaccagcccctgcatgg 337
|||||||||||||||||||| ||||||||||| ||||||| ||||| || || ||||||
Sbjct: 471 ccagcttcaaaccctctgttgctaacaagttcggcccataatccaccggcaccagcatgg 412
Query: 338 ttgatctcctcaaagaagatccc 360
||||||||||| ||||| |||||
Sbjct: 411 ttgatctcctcgaagaaaatccc 389
>emb|BX824011.1|CNS0A4VB Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH14ZD10 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 2351
Score = 93.7 bits (47), Expect = 4e-017
Identities = 74/83 (89%)
Strand = Plus / Minus
Query: 278 ccagcttcaaaccctctgttactaacaagttcagcccatatgccaccagcccctgcatgg 337
|||||||||||||||||||| ||||||||||| ||||||| ||||| || || ||||||
Sbjct: 514 ccagcttcaaaccctctgttgctaacaagttcggcccataatccaccggcaccagcatgg 455
Query: 338 ttgatctcctcaaagaagatccc 360
||||||||||| ||||| |||||
Sbjct: 454 ttgatctcctcgaagaaaatccc 432
>ref|NM_111911.3| Arabidopsis thaliana ASD1; hydrolase, acting on glycosyl bonds
AT3G10740 (ASD1) mRNA, complete cds
Length = 2427
Score = 93.7 bits (47), Expect = 4e-017
Identities = 74/83 (89%)
Strand = Plus / Minus
Query: 278 ccagcttcaaaccctctgttactaacaagttcagcccatatgccaccagcccctgcatgg 337
|||||||||||||||||||| ||||||||||| ||||||| ||||| || || ||||||
Sbjct: 510 ccagcttcaaaccctctgttgctaacaagttcggcccataatccaccggcaccagcatgg 451
Query: 338 ttgatctcctcaaagaagatccc 360
||||||||||| ||||| |||||
Sbjct: 450 ttgatctcctcgaagaaaatccc 428
>gb|BP805706.1|BP805706 BP805706 RAFL16 Arabidopsis thaliana cDNA clone RAFL24-07-A09 5',
mRNA sequence
Length = 415
Score = 85.7 bits (43), Expect = 9e-015
Identities = 73/83 (87%)
Strand = Plus / Minus
Query: 278 ccagcttcaaaccctctgttactaacaagttcagcccatatgccaccagcccctgcatgg 337
||||||||||||||||| || ||||||||||| ||||||| ||||| || || ||||||
Sbjct: 392 ccagcttcaaaccctcttttgctaacaagttcggcccataatccaccggcaccagcatgg 333
Query: 338 ttgatctcctcaaagaagatccc 360
||||||||||| ||||| |||||
Sbjct: 332 ttgatctcctcgaagaaaatccc 310
>gb|BE522243.1|BE522243 M24F11STM Arabidopsis developing seed Arabidopsis thaliana cDNA
clone M24F11 5', mRNA sequence
Length = 390
Score = 77.8 bits (39), Expect = 2e-012
Identities = 72/83 (86%)
Strand = Plus / Minus
Query: 278 ccagcttcaaaccctctgttactaacaagttcagcccatatgccaccagcccctgcatgg 337
||||||||||| ||||| || ||||||||||||||||||| ||||| || || |||||
Sbjct: 161 ccagcttcaaatcctctattgctaacaagttcagcccatagtccacctgctccagcatga 102
Query: 338 ttgatctcctcaaagaagatccc 360
|| || |||||||||||||||||
Sbjct: 101 tttatttcctcaaagaagatccc 79
>gb|AV825043.1|AV825043 AV825043 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-83-O18 5',
mRNA sequence
Length = 655
Score = 77.8 bits (39), Expect = 2e-012
Identities = 72/83 (86%)
Strand = Plus / Minus
Query: 278 ccagcttcaaaccctctgttactaacaagttcagcccatatgccaccagcccctgcatgg 337
||||||||||| ||||| || ||||||||||||||||||| ||||| || || |||||
Sbjct: 336 ccagcttcaaatcctctattgctaacaagttcagcccatagtccacctgctccagcatga 277
Query: 338 ttgatctcctcaaagaagatccc 360
|| || |||||||||||||||||
Sbjct: 276 tttatttcctcaaagaagatccc 254
>gb|BP807146.1|BP807146 BP807146 RAFL16 Arabidopsis thaliana cDNA clone RAFL24-12-J15 5',
mRNA sequence
Length = 392
Score = 77.8 bits (39), Expect = 2e-012
Identities = 69/79 (87%)
Strand = Plus / Minus
Query: 282 cttcaaaccctctgttactaacaagttcagcccatatgccaccagcccctgcatggttga 341
|||||||||||||||| ||||||||||| ||||||| ||||| || || |||||||| |
Sbjct: 391 cttcaaaccctctgtttctaacaagttcggcccataatccaccggcaccagcatggttta 332
Query: 342 tctcctcaaagaagatccc 360
||||||| ||||| |||||
Sbjct: 331 tctcctcgaagaaaatccc 313
>gb|AY063925.1| Arabidopsis thaliana putative arabinosidase (At5g26120) mRNA,
complete cds
Length = 2219
Score = 77.8 bits (39), Expect = 2e-012
Identities = 72/83 (86%)
Strand = Plus / Minus
Query: 278 ccagcttcaaaccctctgttactaacaagttcagcccatatgccaccagcccctgcatgg 337
||||||||||| ||||| || ||||||||||||||||||| ||||| || || |||||
Sbjct: 335 ccagcttcaaatcctctattgctaacaagttcagcccatagtccacctgctccagcatga 276
Query: 338 ttgatctcctcaaagaagatccc 360
|| || |||||||||||||||||
Sbjct: 275 tttatttcctcaaagaagatccc 253
>gb|BT006062.1| Arabidopsis thaliana clone U18147 unknown protein (At5g26120) mRNA,
complete cds
Length = 2055
Score = 77.8 bits (39), Expect = 2e-012
Identities = 72/83 (86%)
Strand = Plus / Minus
Query: 278 ccagcttcaaaccctctgttactaacaagttcagcccatatgccaccagcccctgcatgg 337
||||||||||| ||||| || ||||||||||||||||||| ||||| || || |||||
Sbjct: 260 ccagcttcaaatcctctattgctaacaagttcagcccatagtccacctgctccagcatga 201
Query: 338 ttgatctcctcaaagaagatccc 360
|| || |||||||||||||||||
Sbjct: 200 tttatttcctcaaagaagatccc 178
>gb|AY243510.1| Arabidopsis thaliana alpha-L-arabinofuranosidase (ASD2) mRNA,
complete cds
Length = 2043
Score = 77.8 bits (39), Expect = 2e-012
Identities = 72/83 (86%)
Strand = Plus / Minus
Query: 278 ccagcttcaaaccctctgttactaacaagttcagcccatatgccaccagcccctgcatgg 337
||||||||||| ||||| || ||||||||||||||||||| ||||| || || |||||
Sbjct: 265 ccagcttcaaatcctctattgctaacaagttcagcccatagtccacctgctccagcatga 206
Query: 338 ttgatctcctcaaagaagatccc 360
|| || |||||||||||||||||
Sbjct: 205 tttatttcctcaaagaagatccc 183
>emb|BX833642.1|CNS0A0L4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL67ZG12 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 588
Score = 77.8 bits (39), Expect = 2e-012
Identities = 72/83 (86%)
Strand = Plus / Minus
Query: 278 ccagcttcaaaccctctgttactaacaagttcagcccatatgccaccagcccctgcatgg 337
||||||||||| ||||| || ||||||||||||||||||| ||||| || || |||||
Sbjct: 322 ccagcttcaaatcctctattgctaacaagttcagcccatagtccacctgctccagcatga 263
Query: 338 ttgatctcctcaaagaagatccc 360
|| || |||||||||||||||||
Sbjct: 262 tttatttcctcaaagaagatccc 240
>ref|NM_122513.3| Arabidopsis thaliana hydrolase, acting on glycosyl bonds AT5G26120
mRNA, complete cds
Length = 2208
Score = 77.8 bits (39), Expect = 2e-012
Identities = 72/83 (86%)
Strand = Plus / Minus
Query: 278 ccagcttcaaaccctctgttactaacaagttcagcccatatgccaccagcccctgcatgg 337
||||||||||| ||||| || ||||||||||||||||||| ||||| || || |||||
Sbjct: 335 ccagcttcaaatcctctattgctaacaagttcagcccatagtccacctgctccagcatga 276
Query: 338 ttgatctcctcaaagaagatccc 360
|| || |||||||||||||||||
Sbjct: 275 tttatttcctcaaagaagatccc 253
>gb|BP804915.1|BP804915 BP804915 RAFL16 Arabidopsis thaliana cDNA clone RAFL24-03-M02 5',
mRNA sequence
Length = 376
Score = 71.9 bits (36), Expect = 1e-010
Identities = 63/72 (87%)
Strand = Plus / Minus
Query: 289 ccctctgttactaacaagttcagcccatatgccaccagcccctgcatggttgatctcctc 348
||||||||| ||||||||||| ||||||| ||||| || || |||||||||||||||||
Sbjct: 376 ccctctgttgctaacaagttcggcccataatccaccggcaccagcatggttgatctcctc 317
Query: 349 aaagaagatccc 360
||||| |||||
Sbjct: 316 gaagaaaatccc 305
>gb|BP847175.1|BP847175 BP847175 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-99-J11 5',
mRNA sequence
Length = 470
Score = 69.9 bits (35), Expect = 5e-010
Identities = 72/83 (86%), Gaps = 1/83 (1%)
Strand = Plus / Minus
Query: 278 ccagcttcaaaccctctgttactaacaagttcagcccatatgccaccagcccctgcatgg 337
|||||||||||||||||||| || ||||||| ||||||| ||||| || || ||||||
Sbjct: 465 ccagcttcaaaccctctgttggta-caagttcggcccataatccaccggcaccagcatgg 407
Query: 338 ttgatctcctcaaagaagatccc 360
||||||||||| ||||| |||||
Sbjct: 406 ttgatctcctcgaagaaaatccc 384
>gb|BP833955.1|BP833955 BP833955 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-98-B07 5',
mRNA sequence
Length = 390
Score = 60.0 bits (30), Expect = 5e-007
Identities = 64/74 (86%), Gaps = 1/74 (1%)
Strand = Plus / Minus
Query: 287 aaccctctgttactaacaagttcagcccatatgccaccagcccctgcatggttgatctcc 346
||||||||||| ||||||||||| ||||||| ||||| || || |||| ||||||||||
Sbjct: 383 aaccctctgttgctaacaagttcggcccataatccaccggcaccagcat-gttgatctcc 325
Query: 347 tcaaagaagatccc 360
|| ||||| |||||
Sbjct: 324 tcgaagaaaatccc 311
>gb|AC011708.8|ATAC011708 Arabidopsis thaliana chromosome III BAC T7M13 genomic sequence,
complete sequence
Length = 80379
Score = 60.0 bits (30), Expect = 5e-007
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 290 cctctgttactaacaagttcagcccatatgccaccagcccctgcatggttgatctcct 347
|||||||| ||||||||||| ||||||| ||||| || || ||||||||||||||||
Sbjct: 52178 cctctgttgctaacaagttcggcccataatccaccggcaccagcatggttgatctcct 52121
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 60.0 bits (30), Expect = 5e-007
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 290 cctctgttactaacaagttcagcccatatgccaccagcccctgcatggttgatctcct 347
|||||||| ||||||||||| ||||||| ||||| || || ||||||||||||||||
Sbjct: 3384185 cctctgttgctaacaagttcggcccataatccaccggcaccagcatggttgatctcct 3384128
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 60.0 bits (30), Expect = 5e-007
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 290 cctctgttactaacaagttcagcccatatgccaccagcccctgcatggttgatctcct 347
|||||||| ||||||||||| ||||||| ||||| || || ||||||||||||||||
Sbjct: 3364235 cctctgttgctaacaagttcggcccataatccaccggcaccagcatggttgatctcct 3364292
>dbj|AB014459.1| Arabidopsis thaliana mRNA for obtusifoliol 14-demethylase, complete
cds
Length = 1899
Score = 44.1 bits (22), Expect = 0.029
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 624 gtcgacgcggccgcgaattcgg 645
||||||||||||||||||||||
Sbjct: 72 gtcgacgcggccgcgaattcgg 51
>emb|CR402938.1| Arabidopsis thaliana T-DNA flanking sequence GK-859B12-025970,
genomic survey sequence
Length = 224
Score = 40.1 bits (20), Expect = 0.46
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 290 cctctgttactaacaagttcagcccata 317
||||| || |||||||||||||||||||
Sbjct: 199 cctctattgctaacaagttcagcccata 172
>gb|CW844392.1|CW844392 GT10968.Ds3.11.04.2002.jw71.186 Arabidopsis thaliana Landsberg Ds
insertion lines Arabidopsis thaliana genomic clone
GT10968, DNA sequence
Length = 178
Score = 40.1 bits (20), Expect = 0.46
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 290 cctctgttactaacaagttcagcccata 317
||||| || |||||||||||||||||||
Sbjct: 57 cctctattgctaacaagttcagcccata 30
>gb|BP865024.1|BP865024 BP865024 RAFL21 Arabidopsis thaliana cDNA clone RAFL21-72-K04 5',
mRNA sequence
Length = 380
Score = 40.1 bits (20), Expect = 0.46
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 333 catggttgatctcctcaaagaagatccc 360
|||||||||||||||| ||||| |||||
Sbjct: 376 catggttgatctcctcgaagaaaatccc 349
>gb|AF027174.1|AF027174 Arabidopsis thaliana cellulose synthase catalytic subunit (Ath-B)
mRNA, complete cds
Length = 3682
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 624 gtcgacgcggccgcgaattc 643
||||||||||||||||||||
Sbjct: 59 gtcgacgcggccgcgaattc 40
>gb|AF043351.1|AF043351 Arabidopsis thaliana adenosine-5'-phosphosulfate-kinase (akn2) mRNA,
complete cds
Length = 1311
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 624 gtcgacgcggccgcgaattc 643
||||||||||||||||||||
Sbjct: 1235 gtcgacgcggccgcgaattc 1254
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 624 gtcgacgcggccgcgaattc 643
||||||||||||||||||||
Sbjct: 20 gtcgacgcggccgcgaattc 1
>gb|AF149413.1|T1N24 Arabidopsis thaliana BAC T1N24
Length = 127053
Score = 40.1 bits (20), Expect = 0.46
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 290 cctctgttactaacaagttcagcccata 317
||||| || |||||||||||||||||||
Sbjct: 21212 cctctattgctaacaagttcagcccata 21185
>gb|U87586.1|ATU87586 Arabidopsis thaliana decoy mRNA, complete cds
Length = 974
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 624 gtcgacgcggccgcgaattc 643
||||||||||||||||||||
Sbjct: 35 gtcgacgcggccgcgaattc 16
>gb|AF029262.1|AF029262 Arabidopsis thaliana putative cdc20 protein (CDC20.1) mRNA,
complete cds
Length = 1848
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 624 gtcgacgcggccgcgaattc 643
||||||||||||||||||||
Sbjct: 20 gtcgacgcggccgcgaattc 1
>gb|AF029263.1|AF029263 Arabidopsis thaliana putative cdc20 protein (CDC20.2) mRNA,
complete cds
Length = 1790
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 624 gtcgacgcggccgcgaattc 643
||||||||||||||||||||
Sbjct: 20 gtcgacgcggccgcgaattc 1
>dbj|BD022677.1| Manipulation of cellulose and/or beta-1,4-glucan
Length = 3828
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 624 gtcgacgcggccgcgaattc 643
||||||||||||||||||||
Sbjct: 3809 gtcgacgcggccgcgaattc 3828
>dbj|BD022678.1| Manipulation of cellulose and/or beta-1,4-glucan
Length = 3614
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 624 gtcgacgcggccgcgaattc 643
||||||||||||||||||||
Sbjct: 20 gtcgacgcggccgcgaattc 1
>emb|AX030944.1| Sequence 7 from Patent WO9800549
Length = 3828
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 624 gtcgacgcggccgcgaattc 643
||||||||||||||||||||
Sbjct: 3809 gtcgacgcggccgcgaattc 3828
>emb|AX030946.1| Sequence 9 from Patent WO9800549
Length = 3614
Score = 40.1 bits (20), Expect = 0.46
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 624 gtcgacgcggccgcgaattc 643
||||||||||||||||||||
Sbjct: 20 gtcgacgcggccgcgaattc 1
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 40.1 bits (20), Expect = 0.46
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 290 cctctgttactaacaagttcagcccata 317
||||| || |||||||||||||||||||
Sbjct: 9124922 cctctattgctaacaagttcagcccata 9124949
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 283,286
Number of Sequences: 1013581
Number of extensions: 283286
Number of successful extensions: 20607
Number of sequences better than 0.5: 39
Number of HSP's better than 0.5 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20253
Number of HSP's gapped (non-prelim): 352
length of query: 645
length of database: 908,940,872
effective HSP length: 20
effective length of query: 625
effective length of database: 888,669,252
effective search space: 555418282500
effective search space used: 555418282500
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)