BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3276201.2.1
(1827 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE038577.1|BE038577 AB01D09 AB Arabidopsis thaliana cDNA... 42 0.33
gb|AY075609.1| Arabidopsis thaliana AT4g33840/F17I5_30 mRNA... 42 0.33
gb|BT010469.1| Arabidopsis thaliana At4g33840/F17I5_30 gene... 42 0.33
emb|BX842354.1|CNS0A43V Arabidopsis thaliana Full-length cD... 42 0.33
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 42 0.33
emb|AL031032.1|ATF17I5 Arabidopsis thaliana DNA chromosome ... 42 0.33
emb|AL161584.2|ATCHRIV80 Arabidopsis thaliana DNA chromosom... 42 0.33
ref|NM_119540.1| Arabidopsis thaliana hydrolase, hydrolyzin... 42 0.33
ref|NM_119541.3| Arabidopsis thaliana hydrolase, hydrolyzin... 42 0.33
ref|NM_119543.2| Arabidopsis thaliana hydrolase, hydrolyzin... 42 0.33
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 42 0.33
>gb|BE038577.1|BE038577 AB01D09 AB Arabidopsis thaliana cDNA 5' similar to histone h4, mRNA
sequence
Length = 744
Score = 42.1 bits (21), Expect = 0.33
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 1586 agagagagataaaaggagaaggaaa 1610
|||||||||||||||||||| ||||
Sbjct: 531 agagagagataaaaggagaaagaaa 507
>gb|AY075609.1| Arabidopsis thaliana AT4g33840/F17I5_30 mRNA sequence
Length = 1998
Score = 42.1 bits (21), Expect = 0.33
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 551 ttcgagaacgagatgaagtggtacagcac 579
|||| |||||||||||| |||||||||||
Sbjct: 816 ttcgggaacgagatgaaatggtacagcac 844
>gb|BT010469.1| Arabidopsis thaliana At4g33840/F17I5_30 gene, complete cds
Length = 1731
Score = 42.1 bits (21), Expect = 0.33
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 551 ttcgagaacgagatgaagtggtacagcac 579
|||| |||||||||||| |||||||||||
Sbjct: 760 ttcgggaacgagatgaaatggtacagcac 788
>emb|BX842354.1|CNS0A43V Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB84ZF02 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1948
Score = 42.1 bits (21), Expect = 0.33
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 551 ttcgagaacgagatgaagtggtacagcac 579
|||| |||||||||||| |||||||||||
Sbjct: 785 ttcgcgaacgagatgaaatggtacagcac 813
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 42.1 bits (21), Expect = 0.33
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 551 ttcgagaacgagatgaagtggtacagcac 579
|||| |||||||||||| |||||||||||
Sbjct: 12143982 ttcgcgaacgagatgaaatggtacagcac 12143954
Score = 42.1 bits (21), Expect = 0.33
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 551 ttcgagaacgagatgaagtggtacagcac 579
|||| |||||||||||| |||||||||||
Sbjct: 12137540 ttcgggaacgagatgaaatggtacagcac 12137512
Score = 42.1 bits (21), Expect = 0.33
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 551 ttcgagaacgagatgaagtggtacagcac 579
||||| ||||||||||| |||||||||||
Sbjct: 12134236 ttcgaaaacgagatgaaatggtacagcac 12134208
>emb|AL031032.1|ATF17I5 Arabidopsis thaliana DNA chromosome 4, BAC clone F17I5 (ESSA project)
Length = 86748
Score = 42.1 bits (21), Expect = 0.33
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 551 ttcgagaacgagatgaagtggtacagcac 579
|||| |||||||||||| |||||||||||
Sbjct: 15729 ttcgcgaacgagatgaaatggtacagcac 15701
Score = 42.1 bits (21), Expect = 0.33
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 551 ttcgagaacgagatgaagtggtacagcac 579
|||| |||||||||||| |||||||||||
Sbjct: 9287 ttcgggaacgagatgaaatggtacagcac 9259
Score = 42.1 bits (21), Expect = 0.33
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 551 ttcgagaacgagatgaagtggtacagcac 579
||||| ||||||||||| |||||||||||
Sbjct: 5983 ttcgaaaacgagatgaaatggtacagcac 5955
>emb|AL161584.2|ATCHRIV80 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 80
Length = 192861
Score = 42.1 bits (21), Expect = 0.33
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 551 ttcgagaacgagatgaagtggtacagcac 579
|||| |||||||||||| |||||||||||
Sbjct: 64753 ttcgcgaacgagatgaaatggtacagcac 64725
Score = 42.1 bits (21), Expect = 0.33
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 551 ttcgagaacgagatgaagtggtacagcac 579
|||| |||||||||||| |||||||||||
Sbjct: 58311 ttcgggaacgagatgaaatggtacagcac 58283
Score = 42.1 bits (21), Expect = 0.33
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 551 ttcgagaacgagatgaagtggtacagcac 579
||||| ||||||||||| |||||||||||
Sbjct: 55007 ttcgaaaacgagatgaaatggtacagcac 54979
>ref|NM_119540.1| Arabidopsis thaliana hydrolase, hydrolyzing O-glycosyl compounds
AT4G33830 mRNA, complete cds
Length = 1635
Score = 42.1 bits (21), Expect = 0.33
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 551 ttcgagaacgagatgaagtggtacagcac 579
||||| ||||||||||| |||||||||||
Sbjct: 667 ttcgaaaacgagatgaaatggtacagcac 695
>ref|NM_119541.3| Arabidopsis thaliana hydrolase, hydrolyzing O-glycosyl compounds
AT4G33840 mRNA, complete cds
Length = 1978
Score = 42.1 bits (21), Expect = 0.33
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 551 ttcgagaacgagatgaagtggtacagcac 579
|||| |||||||||||| |||||||||||
Sbjct: 814 ttcgggaacgagatgaaatggtacagcac 842
>ref|NM_119543.2| Arabidopsis thaliana hydrolase, hydrolyzing O-glycosyl compounds
AT4G33860 mRNA, complete cds
Length = 1950
Score = 42.1 bits (21), Expect = 0.33
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 551 ttcgagaacgagatgaagtggtacagcac 579
|||| |||||||||||| |||||||||||
Sbjct: 785 ttcgcgaacgagatgaaatggtacagcac 813
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 42.1 bits (21), Expect = 0.33
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 551 ttcgagaacgagatgaagtggtacagcac 579
|||| |||||||||||| |||||||||||
Sbjct: 16231201 ttcgcgaacgagatgaaatggtacagcac 16231173
Score = 42.1 bits (21), Expect = 0.33
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 551 ttcgagaacgagatgaagtggtacagcac 579
|||| |||||||||||| |||||||||||
Sbjct: 16224759 ttcgggaacgagatgaaatggtacagcac 16224731
Score = 42.1 bits (21), Expect = 0.33
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 551 ttcgagaacgagatgaagtggtacagcac 579
||||| ||||||||||| |||||||||||
Sbjct: 16221455 ttcgaaaacgagatgaaatggtacagcac 16221427
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 680,648
Number of Sequences: 1013581
Number of extensions: 680648
Number of successful extensions: 52411
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51886
Number of HSP's gapped (non-prelim): 525
length of query: 1827
length of database: 908,940,872
effective HSP length: 21
effective length of query: 1806
effective length of database: 887,655,671
effective search space: 1603106141826
effective search space used: 1603106141826
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)